RNA–Protein interactions for RNA: YMR223W

UBP8, Transcript of Ubiquitin-specific protease component of the SAGA acetylation complex, yeastyeast

Gene UBP8, Length 1,416 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP8YMR223W DBF4P32325 704 aa3.37□□□□□ -1.87
UBP8YMR223W ERG3P32353 365 aa3.37□□□□□ -1.87
UBP8YMR223W SLC1P33333 303 aa3.37□□□□□ -1.87
UBP8YMR223W YBR225WP38321 900 aa3.37□□□□□ -1.87
UBP8YMR223W TIF4631P39935 952 aaKnown RBP3.37□□□□□ -1.87
UBP8YMR223W IDP2P41939 412 aa3.37□□□□□ -1.87
UBP8YMR223W RAD17P48581 401 aa3.37□□□□□ -1.87
UBP8YMR223W SAM50P53969 484 aa3.37□□□□□ -1.87
UBP8YMR223W SSK1Q07084 712 aa3.37□□□□□ -1.87
UBP8YMR223W THI20Q08224 551 aa3.37□□□□□ -1.87
UBP8YMR223W PDH1Q12428 516 aaKnown RBP3.37□□□□□ -1.87
UBP8YMR223W PAR32Q12515 295 aaKnown RBP3.37□□□□□ -1.87
UBP8YMR223W CDC16P09798 840 aa3.36□□□□□ -1.87
UBP8YMR223W RNA1P11745 407 aaKnown RBP3.36□□□□□ -1.87
UBP8YMR223W CKA1P15790 372 aa3.36□□□□□ -1.87
UBP8YMR223W SPE2P21182 396 aa3.36□□□□□ -1.87
UBP8YMR223W POT1P27796 417 aaKnown RBP RIP-Chip data3.36□□□□□ -1.87not detected
UBP8YMR223W NIP100P33420 868 aa3.36□□□□□ -1.87
UBP8YMR223W IST3P40565 148 aaPredicted RBP3.36□□□□□ -1.87
UBP8YMR223W SMK1P41808 388 aa3.36□□□□□ -1.87
UBP8YMR223W OCA1P50946 238 aaPredicted RBP3.36□□□□□ -1.87
UBP8YMR223W MNP1P53163 194 aaPredicted RBP3.36□□□□□ -1.87
UBP8YMR223W MRPL13Q02204 264 aa3.36□□□□□ -1.87
UBP8YMR223W YLH47Q06493 454 aa3.36□□□□□ -1.87
UBP8YMR223W TRM8Q12009 286 aa3.36□□□□□ -1.87
UBP8YMR223W SEM1O94742 89 aa3.36□□□□□ -1.87
UBP8YMR223W ARG3P05150 338 aa3.36□□□□□ -1.87
UBP8YMR223W TPK1P06244 397 aa3.36□□□□□ -1.87
UBP8YMR223W VMA2P16140 517 aaKnown RBP3.36□□□□□ -1.87
UBP8YMR223W UBC1P21734 215 aaKnown RBP3.36□□□□□ -1.87
UBP8YMR223W LCB1P25045 558 aaKnown RBP3.36□□□□□ -1.87
UBP8YMR223W ATS1P31386 333 aa3.36□□□□□ -1.87
UBP8YMR223W PTR2P32901 601 aa3.36□□□□□ -1.87
UBP8YMR223W MDL1P33310 695 aa3.36□□□□□ -1.87
UBP8YMR223W ECM15P35195 104 aa3.36□□□□□ -1.87
UBP8YMR223W SNU114P36048 1008 aaKnown RBP3.36□□□□□ -1.87
UBP8YMR223W PIM1P36775 1133 aa3.36□□□□□ -1.87
UBP8YMR223W SLX1P38324 304 aa3.36□□□□□ -1.87
UBP8YMR223W FMP10P40098 244 aa3.36□□□□□ -1.87
UBP8YMR223W PFK26P40433 827 aaKnown RBP3.36□□□□□ -1.87
UBP8YMR223W LYS14P40971 790 aa3.36□□□□□ -1.87
UBP8YMR223W FYV8P46949 817 aaKnown RBP3.36□□□□□ -1.87
UBP8YMR223W KEL2P50090 882 aa3.36□□□□□ -1.87
UBP8YMR223W YMR111CQ04461 462 aaPredicted RBP3.36□□□□□ -1.87
UBP8YMR223W TFC6Q06339 672 aa3.36□□□□□ -1.87
UBP8YMR223W PHO92Q06390 306 aa3.36□□□□□ -1.87
UBP8YMR223W CLP1Q08685 445 aaPredicted RBP3.36□□□□□ -1.87
UBP8YMR223W INP53Q12271 1107 aa3.36□□□□□ -1.87
UBP8YMR223W FRE6Q12473 712 aa3.36□□□□□ -1.87
UBP8YMR223W VCX1Q99385 411 aa3.36□□□□□ -1.87
UBP8YMR223W NUC1P08466 329 aa3.35□□□□□ -1.87
UBP8YMR223W SNF3P10870 884 aa3.35□□□□□ -1.87
UBP8YMR223W SEC62P21825 274 aa3.35□□□□□ -1.87
UBP8YMR223W GPI10P30777 616 aa3.35□□□□□ -1.87
UBP8YMR223W SAC6P32599 642 aaKnown RBP3.35□□□□□ -1.87
UBP8YMR223W SIP2P34164 415 aaKnown RBP3.35□□□□□ -1.87
UBP8YMR223W IFA38P38286 347 aa3.35□□□□□ -1.87
UBP8YMR223W BFR1P38934 470 aaKnown RBP RIP-Chip data3.35□□□□□ -1.87not detected
UBP8YMR223W PSF2P40359 213 aa3.35□□□□□ -1.87
UBP8YMR223W LCB2P40970 561 aa3.35□□□□□ -1.87
UBP8YMR223W AGX1P43567 385 aa3.35□□□□□ -1.87
UBP8YMR223W HST1P53685 503 aa3.35□□□□□ -1.87
UBP8YMR223W CBK1P53894 756 aa3.35□□□□□ -1.87
UBP8YMR223W PEX25Q02969 394 aa3.35□□□□□ -1.87
UBP8YMR223W VID22Q05934 901 aa3.35□□□□□ -1.87
UBP8YMR223W SMD2Q06217 110 aaKnown RBP3.35□□□□□ -1.87
UBP8YMR223W LAS1P36146 502 aaPredicted RBP3.34□□□□□ -1.88
UBP8YMR223W HSM3P38348 480 aa3.34□□□□□ -1.88
UBP8YMR223W LAG1P38703 411 aa3.34□□□□□ -1.88
UBP8YMR223W PRE5P40302 234 aaKnown RBP3.34□□□□□ -1.88
UBP8YMR223W SEC28P40509 296 aaKnown RBP3.34□□□□□ -1.88
UBP8YMR223W ERV25P54837 211 aaKnown RBP3.34□□□□□ -1.88
UBP8YMR223W DPB4Q04603 196 aaKnown RBP3.34□□□□□ -1.88
UBP8YMR223W PMR1P13586 950 aa3.33□□□□□ -1.88
UBP8YMR223W MER1P16523 270 aa3.33□□□□□ -1.88
UBP8YMR223W OM45P16547 393 aa3.33□□□□□ -1.88
UBP8YMR223W PFK2P16862 959 aaKnown RBP RIP-Chip data3.33□□□□□ -1.88not detected
UBP8YMR223W OLE1P21147 510 aaKnown RBP3.33□□□□□ -1.88
UBP8YMR223W MRPL25P23369 157 aa3.33□□□□□ -1.88
UBP8YMR223W ROX1P25042 368 aa3.33□□□□□ -1.88
UBP8YMR223W SGF29P25554 259 aa3.33□□□□□ -1.88
UBP8YMR223W SMI1P32566 505 aa3.33□□□□□ -1.88
UBP8YMR223W GDI1P39958 451 aaKnown RBP3.33□□□□□ -1.88
UBP8YMR223W YER010CP40011 234 aa3.33□□□□□ -1.88
UBP8YMR223W NAS2P40555 220 aa3.33□□□□□ -1.88
UBP8YMR223W STR3P53101 465 aaKnown RBP3.33□□□□□ -1.88
UBP8YMR223W PIL1P53252 339 aaKnown RBP3.33□□□□□ -1.88
UBP8YMR223W YNR068CP53754 272 aa3.33□□□□□ -1.88
UBP8YMR223W YPL107WQ02873 248 aa3.33□□□□□ -1.88
UBP8YMR223W AIM32Q04689 311 aa3.33□□□□□ -1.88
UBP8YMR223W SNO4Q04902 237 aa3.33□□□□□ -1.88
UBP8YMR223W HSP33Q08914 237 aaKnown RBP3.33□□□□□ -1.88
UBP8YMR223W HSP32Q08992 237 aa3.33□□□□□ -1.88
UBP8YMR223W AYT1Q12226 474 aa3.33□□□□□ -1.88
UBP8YMR223W ISA2Q12425 185 aa3.33□□□□□ -1.88
UBP8YMR223W PUT2P07275 575 aa3.32□□□□□ -1.88
UBP8YMR223W FUM1P08417 488 aaKnown RBP3.32□□□□□ -1.88
UBP8YMR223W RPL20AP0CX23 172 aaKnown RBP3.32□□□□□ -1.88
UBP8YMR223W RPL20BP0CX24 172 aaPredicted RBP3.32□□□□□ -1.88
UBP8YMR223W APE1P14904 514 aa3.32□□□□□ -1.88
Retrieved 100 of 5,963 RNA–protein pairs in 14 ms