RNA–Protein interactions for RNA: YDR494W

RSM28, Transcript of Mitochondrial ribosomal protein of the small subunit, yeast

Gene RSM28, Length 1,086 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RSM28	YDR494W	YHR210C	P38893	341 aa		3.16	□□□□□ -1.9
RSM28	YDR494W	DOT5	P40553	215 aa		3.16	□□□□□ -1.9
RSM28	YDR494W	RMD8	P43620	662 aa		3.16	□□□□□ -1.9
RSM28	YDR494W	IKS1	P47042	667 aa		3.16	□□□□□ -1.9
RSM28	YDR494W	COQ9	Q05779	260 aa		3.16	□□□□□ -1.9
RSM28	YDR494W	NCE102	Q12207	173 aa	RIP-Chip data	3.16	□□□□□ -1.9	not detected
RSM28	YDR494W	RLM1	Q12224	676 aa		3.16	□□□□□ -1.9
RSM28	YDR494W	RRI2	Q12348	645 aa		3.16	□□□□□ -1.9
RSM28	YDR494W	PEP4	P07267	405 aa	Known RBP	3.15	□□□□□ -1.91
RSM28	YDR494W	DFR1	P07807	211 aa	Known RBP RIP-Chip data	3.15	□□□□□ -1.91	not detected
RSM28	YDR494W	MET8	P15807	274 aa		3.15	□□□□□ -1.91
RSM28	YDR494W	SGV1	P23293	657 aa	Known RBP	3.15	□□□□□ -1.91
RSM28	YDR494W	PAP1	P29468	568 aa	Known RBP	3.15	□□□□□ -1.91
RSM28	YDR494W	YME1	P32795	747 aa		3.15	□□□□□ -1.91
RSM28	YDR494W	SHP1	P34223	423 aa		3.15	□□□□□ -1.91
RSM28	YDR494W	SRO77	P38163	1010 aa		3.15	□□□□□ -1.91
RSM28	YDR494W	MSR1	P38714	643 aa		3.15	□□□□□ -1.91
RSM28	YDR494W	CSM2	P40465	213 aa		3.15	□□□□□ -1.91
RSM28	YDR494W	ALK1	P43633	760 aa	Known RBP	3.15	□□□□□ -1.91
RSM28	YDR494W	YDL186W	P48568	277 aa		3.15	□□□□□ -1.91
RSM28	YDR494W	TOF2	Q02208	771 aa		3.15	□□□□□ -1.91
RSM28	YDR494W	YMR087W	Q04299	284 aa		3.15	□□□□□ -1.91
RSM28	YDR494W	RPC11	Q04307	110 aa	Predicted RBP	3.15	□□□□□ -1.91
RSM28	YDR494W	MFB1	Q04922	465 aa		3.15	□□□□□ -1.91
RSM28	YDR494W	IMH1	Q06704	911 aa	Known RBP	3.15	□□□□□ -1.91
RSM28	YDR494W	THP1	Q08231	455 aa		3.15	□□□□□ -1.91
RSM28	YDR494W	YOR365C	Q08844	703 aa		3.15	□□□□□ -1.91
RSM28	YDR494W	YLL056C	Q12177	298 aa		3.15	□□□□□ -1.91
RSM28	YDR494W	MED1	Q12321	566 aa		3.15	□□□□□ -1.91
RSM28	YDR494W	FOB1	O13329	566 aa		3.14	□□□□□ -1.91
RSM28	YDR494W	CAR1	P00812	333 aa	Known RBP	3.14	□□□□□ -1.91
RSM28	YDR494W	RPL15A	P05748	204 aa	Known RBP	3.14	□□□□□ -1.91
RSM28	YDR494W	RAD52	P06778	471 aa	Known RBP	3.14	□□□□□ -1.91
RSM28	YDR494W	GDH1	P07262	454 aa	Known RBP	3.14	□□□□□ -1.91
RSM28	YDR494W	OCA4	P25366	362 aa		3.14	□□□□□ -1.91
RSM28	YDR494W	OSH3	P38713	996 aa	Known RBP	3.14	□□□□□ -1.91
RSM28	YDR494W	NPR2	P39923	615 aa		3.14	□□□□□ -1.91
RSM28	YDR494W	MKT1	P40850	830 aa	Known RBP	3.14	□□□□□ -1.91
RSM28	YDR494W	YJR154W	P47181	346 aa		3.14	□□□□□ -1.91
RSM28	YDR494W	SHE10	P53075	577 aa		3.14	□□□□□ -1.91
RSM28	YDR494W	ARE2	P53629	642 aa	Known RBP	3.14	□□□□□ -1.91
RSM28	YDR494W	RPM2	Q02773	1202 aa		3.14	□□□□□ -1.91
RSM28	YDR494W	FIN1	Q03898	291 aa		3.14	□□□□□ -1.91
RSM28	YDR494W	ELO2	P25358	347 aa		3.13	□□□□□ -1.91
RSM28	YDR494W	PTR2	P32901	601 aa		3.13	□□□□□ -1.91
RSM28	YDR494W	WBP1	P33767	430 aa	Known RBP	3.13	□□□□□ -1.91
RSM28	YDR494W	SIP2	P34164	415 aa	Known RBP	3.13	□□□□□ -1.91
RSM28	YDR494W	BNA4	P38169	460 aa		3.13	□□□□□ -1.91
RSM28	YDR494W	VPS52	P39904	641 aa		3.13	□□□□□ -1.91
RSM28	YDR494W	SPG5	P42933	373 aa		3.13	□□□□□ -1.91
RSM28	YDR494W	YPI1	P43587	155 aa		3.13	□□□□□ -1.91
RSM28	YDR494W	SCD6	P45978	349 aa	Known RBP RIP-Chip data	3.13	□□□□□ -1.91	not detected
RSM28	YDR494W	AIM22	P47051	409 aa		3.13	□□□□□ -1.91
RSM28	YDR494W	PET130	P47065	347 aa		3.13	□□□□□ -1.91
RSM28	YDR494W	DRN1	P53255	507 aa	Known RBP	3.13	□□□□□ -1.91
RSM28	YDR494W	TIM10	P87108	93 aa		3.13	□□□□□ -1.91
RSM28	YDR494W	YDR239C	Q03780	787 aa		3.13	□□□□□ -1.91
RSM28	YDR494W	IVY1	Q04934	453 aa		3.13	□□□□□ -1.91
RSM28	YDR494W	MTF1	P14908	341 aa	Known RBP	3.12	□□□□□ -1.91
RSM28	YDR494W	PRD1	P25375	712 aa		3.12	□□□□□ -1.91
RSM28	YDR494W	ATS1	P31386	333 aa		3.12	□□□□□ -1.91
RSM28	YDR494W	AGA1	P32323	725 aa		3.12	□□□□□ -1.91
RSM28	YDR494W	NDC1	P32500	655 aa		3.12	□□□□□ -1.91
RSM28	YDR494W	SWE1	P32944	819 aa		3.12	□□□□□ -1.91
RSM28	YDR494W	SWH1	P35845	1188 aa		3.12	□□□□□ -1.91
RSM28	YDR494W	CST26	P38226	397 aa		3.12	□□□□□ -1.91
RSM28	YDR494W	TCM62	P38228	572 aa	Known RBP	3.12	□□□□□ -1.91
RSM28	YDR494W	NAB3	P38996	802 aa	Known RBP RIP-Chip data	3.12	□□□□□ -1.91	not detected
RSM28	YDR494W	FAA2	P39518	744 aa		3.12	□□□□□ -1.91
RSM28	YDR494W	TIF4631	P39935	952 aa	Known RBP	3.12	□□□□□ -1.91
RSM28	YDR494W	SPO22	P40511	975 aa		3.12	□□□□□ -1.91
RSM28	YDR494W	YJL213W	P40896	331 aa		3.12	□□□□□ -1.91
RSM28	YDR494W	ARF3	P40994	183 aa	RIP-Chip data	3.12	□□□□□ -1.91	not detected
RSM28	YDR494W	RTT101	P47050	842 aa		3.12	□□□□□ -1.91
RSM28	YDR494W	CAF130	P53280	1122 aa	Predicted RBP	3.12	□□□□□ -1.91
RSM28	YDR494W	ADD37	Q03233	198 aa		3.12	□□□□□ -1.91
RSM28	YDR494W	SLD5	Q03406	294 aa		3.12	□□□□□ -1.91
RSM28	YDR494W	SYO1	Q07395	620 aa		3.12	□□□□□ -1.91
RSM28	YDR494W	YDL009C	Q12210	107 aa		3.12	□□□□□ -1.91
RSM28	YDR494W	ARG3	P05150	338 aa		3.11	□□□□□ -1.91
RSM28	YDR494W	COR1	P07256	457 aa		3.11	□□□□□ -1.91
RSM28	YDR494W	MRP7	P12687	371 aa		3.11	□□□□□ -1.91
RSM28	YDR494W	HSC82	P15108	705 aa	Known RBP	3.11	□□□□□ -1.91
RSM28	YDR494W	PRP2	P20095	876 aa	Predicted RBP	3.11	□□□□□ -1.91
RSM28	YDR494W	YCR007C	P25354	239 aa		3.11	□□□□□ -1.91
RSM28	YDR494W	UTR4	P32626	227 aa		3.11	□□□□□ -1.91
RSM28	YDR494W	FRE1	P32791	686 aa		3.11	□□□□□ -1.91
RSM28	YDR494W	MSN2	P33748	704 aa		3.11	□□□□□ -1.91
RSM28	YDR494W	MRPL4	P36517	319 aa		3.11	□□□□□ -1.91
RSM28	YDR494W	DUG2	P38149	878 aa		3.11	□□□□□ -1.91
RSM28	YDR494W	YEL057C	P39983	233 aa		3.11	□□□□□ -1.91
RSM28	YDR494W	MET28	P40573	187 aa		3.11	□□□□□ -1.91
RSM28	YDR494W	YFR016C	P43597	1233 aa	Known RBP	3.11	□□□□□ -1.91
RSM28	YDR494W	COS10	P52924	374 aa		3.11	□□□□□ -1.91
RSM28	YDR494W	ZPR1	P53303	486 aa	Known RBP	3.11	□□□□□ -1.91
RSM28	YDR494W	HEF3	P53978	1044 aa	Known RBP	3.11	□□□□□ -1.91
RSM28	YDR494W	RLI1	Q03195	608 aa	Known RBP	3.11	□□□□□ -1.91
RSM28	YDR494W	ERP1	Q05359	219 aa	Known RBP	3.11	□□□□□ -1.91
RSM28	YDR494W	MRPL51	Q06090	140 aa	Predicted RBP	3.11	□□□□□ -1.91
RSM28	YDR494W	PHO92	Q06390	306 aa		3.11	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 30.6 ms