RNA–Protein interactions for RNA: YBR170C

NPL4, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene NPL4, Length 1,743 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NPL4YBR170C RHO5P53879 331 aaKnown RBP4.35□□□□□ -1.71
NPL4YBR170C NCS2P53923 493 aaPredicted RBP4.35□□□□□ -1.71
NPL4YBR170C TIM44Q01852 431 aa4.35□□□□□ -1.71
NPL4YBR170C PRP3Q03338 469 aaPredicted RBP4.35□□□□□ -1.71
NPL4YBR170C ADE5,7P07244 802 aaKnown RBP4.34□□□□□ -1.71
NPL4YBR170C CBP1P07252 654 aa4.34□□□□□ -1.71
NPL4YBR170C SPS4P09937 338 aa4.34□□□□□ -1.71
NPL4YBR170C YCR006CP25350 157 aa4.34□□□□□ -1.71
NPL4YBR170C GSY2P27472 705 aa4.34□□□□□ -1.71
NPL4YBR170C PXL1P36166 706 aa4.34□□□□□ -1.71
NPL4YBR170C RIX1P38883 763 aaPredicted RBP4.34□□□□□ -1.71
NPL4YBR170C MBB1P39534 108 aa4.34□□□□□ -1.71
NPL4YBR170C YJL043WP47053 257 aa4.34□□□□□ -1.71
NPL4YBR170C ALT2P52892 507 aa4.34□□□□□ -1.71
NPL4YBR170C YGL108CP53139 140 aa4.34□□□□□ -1.71
NPL4YBR170C SLG1P54867 378 aa4.34□□□□□ -1.71
NPL4YBR170C ADE13Q05911 482 aaKnown RBP4.34□□□□□ -1.71
NPL4YBR170C ULA1Q12059 462 aa4.34□□□□□ -1.71
NPL4YBR170C NCE102Q12207 173 aaRIP-Chip data4.34□□□□□ -1.71not detected
NPL4YBR170C COR1P07256 457 aa4.33□□□□□ -1.72
NPL4YBR170C PEP4P07267 405 aaKnown RBP4.33□□□□□ -1.72
NPL4YBR170C CLN1P20437 546 aa4.33□□□□□ -1.72
NPL4YBR170C AFG1P32317 509 aa4.33□□□□□ -1.72
NPL4YBR170C YEL043WP32618 956 aa4.33□□□□□ -1.72
NPL4YBR170C ULP2P40537 1034 aaPredicted RBP4.33□□□□□ -1.72
NPL4YBR170C LYS20P48570 428 aaKnown RBP4.33□□□□□ -1.72
NPL4YBR170C YGR126WP53274 230 aa4.33□□□□□ -1.72
NPL4YBR170C YMR130WQ04223 302 aa4.33□□□□□ -1.72
NPL4YBR170C VTI1Q04338 217 aa4.33□□□□□ -1.72
NPL4YBR170C DBP9Q06218 594 aaKnown RBP4.33□□□□□ -1.72
NPL4YBR170C ATG26Q06321 1198 aa4.33□□□□□ -1.72
NPL4YBR170C AEP3Q12089 606 aa4.33□□□□□ -1.72
NPL4YBR170C BI2P03873 423 aa4.32□□□□□ -1.72
NPL4YBR170C CDC43P18898 376 aa4.32□□□□□ -1.72
NPL4YBR170C NUP1P20676 1076 aa4.32□□□□□ -1.72
NPL4YBR170C ARA1P38115 344 aa4.32□□□□□ -1.72
NPL4YBR170C CIN1P40987 1014 aa4.32□□□□□ -1.72
NPL4YBR170C ALK1P43633 760 aaKnown RBP4.32□□□□□ -1.72
NPL4YBR170C TOM22P49334 152 aa4.32□□□□□ -1.72
NPL4YBR170C PYK2P52489 506 aaKnown RBP4.32□□□□□ -1.72
NPL4YBR170C PPM1Q04081 328 aa4.32□□□□□ -1.72
NPL4YBR170C TMN2Q04562 672 aa4.32□□□□□ -1.72
NPL4YBR170C YDL057WQ07379 328 aa4.32□□□□□ -1.72
NPL4YBR170C PML1Q07930 204 aaPredicted RBP4.32□□□□□ -1.72
NPL4YBR170C VAM3Q12241 283 aa4.32□□□□□ -1.72
NPL4YBR170C SUT2Q12286 268 aa4.32□□□□□ -1.72
NPL4YBR170C RPL6BP05739 176 aaKnown RBP4.32□□□□□ -1.72
NPL4YBR170C SRV2P17555 526 aaKnown RBP4.32□□□□□ -1.72
NPL4YBR170C MSS51P32335 436 aa4.32□□□□□ -1.72
NPL4YBR170C SPC110P32380 944 aa4.32□□□□□ -1.72
NPL4YBR170C OCT1P35999 772 aa4.32□□□□□ -1.72
NPL4YBR170C WSS1P38838 269 aa4.32□□□□□ -1.72
NPL4YBR170C KEL1P38853 1164 aaKnown RBP4.32□□□□□ -1.72
NPL4YBR170C YMR147WP40218 223 aaKnown RBP4.32□□□□□ -1.72
NPL4YBR170C ORC5P50874 479 aa4.32□□□□□ -1.72
NPL4YBR170C ASI1P54074 624 aa4.32□□□□□ -1.72
NPL4YBR170C RPL6AQ02326 176 aaKnown RBP4.32□□□□□ -1.72
NPL4YBR170C LGE1Q02796 332 aaKnown RBP4.32□□□□□ -1.72
NPL4YBR170C APL5Q08951 932 aaKnown RBP4.32□□□□□ -1.72
NPL4YBR170C MED2Q12124 431 aa4.32□□□□□ -1.72
NPL4YBR170C RAV1P47104 1357 aa4.31□□□□□ -1.72
NPL4YBR170C GPH1P06738 902 aaKnown RBP4.31□□□□□ -1.72
NPL4YBR170C RHO2P06781 192 aa4.31□□□□□ -1.72
NPL4YBR170C SUI2P20459 304 aaKnown RBP4.31□□□□□ -1.72
NPL4YBR170C GEX1P25596 615 aa4.31□□□□□ -1.72
NPL4YBR170C HIR2P32480 875 aa4.31□□□□□ -1.72
NPL4YBR170C UBA4P38820 440 aa4.31□□□□□ -1.72
NPL4YBR170C FAD1P38913 306 aa4.31□□□□□ -1.72
NPL4YBR170C GND2P53319 492 aa4.31□□□□□ -1.72
NPL4YBR170C YNR068CP53754 272 aa4.31□□□□□ -1.72
NPL4YBR170C HEF3P53978 1044 aaKnown RBP4.31□□□□□ -1.72
NPL4YBR170C ADA2Q02336 434 aa4.31□□□□□ -1.72
NPL4YBR170C PDR8Q06149 701 aa4.31□□□□□ -1.72
NPL4YBR170C DCS1Q06151 350 aa4.31□□□□□ -1.72
NPL4YBR170C PIG1Q06216 648 aa4.31□□□□□ -1.72
NPL4YBR170C RRP9Q06506 573 aaKnown RBP4.31□□□□□ -1.72
NPL4YBR170C RDL1Q12305 139 aaKnown RBP4.31□□□□□ -1.72
NPL4YBR170C SHP1P34223 423 aa4.3□□□□□ -1.72
NPL4YBR170C CUE2P36075 443 aaKnown RBP4.3□□□□□ -1.72
NPL4YBR170C ZTA1P38230 334 aaKnown RBP4.3□□□□□ -1.72
NPL4YBR170C YHR210CP38893 341 aa4.3□□□□□ -1.72
NPL4YBR170C MLH1P38920 769 aa4.3□□□□□ -1.72
NPL4YBR170C CHS6P40955 746 aa4.3□□□□□ -1.72
NPL4YBR170C QRI1P43123 477 aaKnown RBP4.3□□□□□ -1.72
NPL4YBR170C MRK1P50873 501 aa4.3□□□□□ -1.72
NPL4YBR170C DRN1P53255 507 aaKnown RBP4.3□□□□□ -1.72
NPL4YBR170C KTR5P53966 522 aaPredicted RBP4.3□□□□□ -1.72
NPL4YBR170C THP1Q08231 455 aa4.3□□□□□ -1.72
NPL4YBR170C MCH4Q08268 501 aa4.3□□□□□ -1.72
NPL4YBR170C YLR278CQ05854 1341 aa4.3□□□□□ -1.72
NPL4YBR170C RIP1P08067 215 aa4.29□□□□□ -1.72
NPL4YBR170C ARO3P14843 370 aaKnown RBP4.29□□□□□ -1.72
NPL4YBR170C CNA1P23287 553 aa4.29□□□□□ -1.72
NPL4YBR170C MCM4P30665 933 aaKnown RBP4.29□□□□□ -1.72
NPL4YBR170C TCM62P38228 572 aaKnown RBP4.29□□□□□ -1.72
NPL4YBR170C PFF1P38244 976 aa4.29□□□□□ -1.72
NPL4YBR170C MMS4P38257 691 aa4.29□□□□□ -1.72
NPL4YBR170C GDT1P38301 280 aaPredicted RBP4.29□□□□□ -1.72
NPL4YBR170C ARN1P38731 627 aa4.29□□□□□ -1.72
NPL4YBR170C YTA12P40341 825 aa4.29□□□□□ -1.72
Retrieved 100 of 5,963 RNA–protein pairs in 22.5 ms