RNA–Protein interactions for RNA: YBR160W

CDC28, Transcript of Cyclin-dependent kinase (CDK) catalytic subunit, yeast

Gene CDC28, Length 897 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC28	YBR160W	DIA3	P52290	468 aa		4.86	□□□□□ -1.63
CDC28	YBR160W	SLM2	P53955	656 aa		4.86	□□□□□ -1.63
CDC28	YBR160W	MMT1	Q03218	510 aa		4.86	□□□□□ -1.63
CDC28	YBR160W	SLD5	Q03406	294 aa		4.86	□□□□□ -1.63
CDC28	YBR160W	YMR160W	Q03823	816 aa		4.86	□□□□□ -1.63
CDC28	YBR160W	RRP17	Q04031	235 aa	Predicted RBP	4.86	□□□□□ -1.63
CDC28	YBR160W	CDC123	Q05791	360 aa		4.86	□□□□□ -1.63
CDC28	YBR160W	VAM6	Q07468	1049 aa		4.86	□□□□□ -1.63
CDC28	YBR160W	YDL121C	Q07541	149 aa		4.86	□□□□□ -1.63
CDC28	YBR160W	LOT6	Q07923	191 aa		4.86	□□□□□ -1.63
CDC28	YBR160W	SGO1	Q08490	590 aa		4.86	□□□□□ -1.63
CDC28	YBR160W	ULA1	Q12059	462 aa		4.86	□□□□□ -1.63
CDC28	YBR160W	EMP46	Q12396	444 aa		4.86	□□□□□ -1.63
CDC28	YBR160W	YMR030W-A	Q3E760	96 aa		4.86	□□□□□ -1.63
CDC28	YBR160W	TPK3	P05986	398 aa		4.85	□□□□□ -1.63
CDC28	YBR160W	TPK2	P06245	380 aa		4.85	□□□□□ -1.63
CDC28	YBR160W	SAM1	P10659	382 aa	Known RBP	4.85	□□□□□ -1.63
CDC28	YBR160W	MSS116	P15424	664 aa	Known RBP	4.85	□□□□□ -1.63
CDC28	YBR160W	POL30	P15873	258 aa	Known RBP	4.85	□□□□□ -1.63
CDC28	YBR160W	STF2	P16965	84 aa		4.85	□□□□□ -1.63
CDC28	YBR160W	CTR86	P25355	563 aa		4.85	□□□□□ -1.63
CDC28	YBR160W	PER1	P25625	357 aa		4.85	□□□□□ -1.63
CDC28	YBR160W	APE2	P32454	952 aa	Known RBP	4.85	□□□□□ -1.63
CDC28	YBR160W	KDX1	P36005	433 aa		4.85	□□□□□ -1.63
CDC28	YBR160W	SHM2	P37291	469 aa	Known RBP	4.85	□□□□□ -1.63
CDC28	YBR160W	SSZ1	P38788	538 aa	Known RBP	4.85	□□□□□ -1.63
CDC28	YBR160W	APE4	P38821	490 aa		4.85	□□□□□ -1.63
CDC28	YBR160W	YHR182W	P38870	785 aa		4.85	□□□□□ -1.63
CDC28	YBR160W	AIM18	P38884	321 aa		4.85	□□□□□ -1.63
CDC28	YBR160W	MPT5	P39016	859 aa	Known RBP RIP-Chip data	4.85	□□□□□ -1.63	not detected
CDC28	YBR160W	PLB1	P39105	664 aa		4.85	□□□□□ -1.63
CDC28	YBR160W	AST2	P39945	430 aa	Known RBP	4.85	□□□□□ -1.63
CDC28	YBR160W	YEL025C	P39991	1188 aa		4.85	□□□□□ -1.63
CDC28	YBR160W	IMA5	P40884	581 aa		4.85	□□□□□ -1.63
CDC28	YBR160W	RAI1	P53063	387 aa	Known RBP	4.85	□□□□□ -1.63
CDC28	YBR160W	GPI1	P53306	609 aa		4.85	□□□□□ -1.63
CDC28	YBR160W	YNL095C	P53932	642 aa		4.85	□□□□□ -1.63
CDC28	YBR160W	YNL033W	P53964	284 aa		4.85	□□□□□ -1.63
CDC28	YBR160W	YNL019C	P53975	284 aa		4.85	□□□□□ -1.63
CDC28	YBR160W	YNL010W	P53981	241 aa	Known RBP	4.85	□□□□□ -1.63
CDC28	YBR160W	ECM9	Q02202	377 aa		4.85	□□□□□ -1.63
CDC28	YBR160W	SVL3	Q03088	825 aa	Known RBP	4.85	□□□□□ -1.63
CDC28	YBR160W	YML108W	Q03759	105 aa		4.85	□□□□□ -1.63
CDC28	YBR160W	RSC3	Q06639	885 aa		4.85	□□□□□ -1.63
CDC28	YBR160W	FMP45	Q07651	309 aa		4.85	□□□□□ -1.63
CDC28	YBR160W	DIS3	Q08162	1001 aa	Known RBP	4.85	□□□□□ -1.63
CDC28	YBR160W	NRT1	Q08485	598 aa		4.85	□□□□□ -1.63
CDC28	YBR160W	THI21	Q08975	551 aa		4.85	□□□□□ -1.63
CDC28	YBR160W	VPS54	Q12071	889 aa		4.85	□□□□□ -1.63
CDC28	YBR160W	MED11	Q99278	115 aa		4.85	□□□□□ -1.63
CDC28	YBR160W	AI5_ALPHA	Q9ZZX1	630 aa		4.85	□□□□□ -1.63
CDC28	YBR160W	UBR2	Q07963	1872 aa		4.85	□□□□□ -1.63
CDC28	YBR160W	LAA1	P39526	2014 aa		4.84	□□□□□ -1.63
CDC28	YBR160W	RPP2A	P05319	106 aa	Known RBP	4.84	□□□□□ -1.63
CDC28	YBR160W	ASP3-2	P0CX77	362 aa		4.84	□□□□□ -1.63
CDC28	YBR160W	ASP3-3	P0CX78	362 aa		4.84	□□□□□ -1.63
CDC28	YBR160W	ASP3-4	P0CX79	362 aa		4.84	□□□□□ -1.63
CDC28	YBR160W	ASP3-1	P0CZ17	362 aa		4.84	□□□□□ -1.63
CDC28	YBR160W	WHI2	P12611	486 aa		4.84	□□□□□ -1.63
CDC28	YBR160W	MRP13	P12686	339 aa		4.84	□□□□□ -1.63
CDC28	YBR160W	SEC15	P22224	910 aa		4.84	□□□□□ -1.63
CDC28	YBR160W	CAD1	P24813	409 aa	Known RBP	4.84	□□□□□ -1.63
CDC28	YBR160W	RVS161	P25343	265 aa	Known RBP	4.84	□□□□□ -1.63
CDC28	YBR160W	HXT3	P32466	567 aa	Known RBP	4.84	□□□□□ -1.63
CDC28	YBR160W	PAH1	P32567	862 aa		4.84	□□□□□ -1.63
CDC28	YBR160W	GDH2	P33327	1092 aa	Known RBP	4.84	□□□□□ -1.63
CDC28	YBR160W	MTC2	P34246	357 aa		4.84	□□□□□ -1.63
CDC28	YBR160W	YBR139W	P38109	508 aa		4.84	□□□□□ -1.63
CDC28	YBR160W	VMA22	P38784	181 aa		4.84	□□□□□ -1.63
CDC28	YBR160W	ACA1	P39970	489 aa		4.84	□□□□□ -1.63
CDC28	YBR160W	KRE29	P40026	464 aa		4.84	□□□□□ -1.63
CDC28	YBR160W	THO1	P40040	218 aa	Known RBP	4.84	□□□□□ -1.63
CDC28	YBR160W	MGS1	P40151	587 aa		4.84	□□□□□ -1.63
CDC28	YBR160W	YRB2	P40517	327 aa		4.84	□□□□□ -1.63
CDC28	YBR160W	CAF16	P43569	289 aa		4.84	□□□□□ -1.63
CDC28	YBR160W	GYP8	P43570	497 aa		4.84	□□□□□ -1.63
CDC28	YBR160W	YJR120W	P47157	116 aa		4.84	□□□□□ -1.63
CDC28	YBR160W	MNN10	P50108	393 aa	Known RBP	4.84	□□□□□ -1.63
CDC28	YBR160W	PSP2	P50109	593 aa	Known RBP	4.84	□□□□□ -1.63
CDC28	YBR160W	ALT2	P52892	507 aa		4.84	□□□□□ -1.63
CDC28	YBR160W	NCS6	P53088	359 aa		4.84	□□□□□ -1.63
CDC28	YBR160W	YGR283C	P53336	341 aa	Predicted RBP	4.84	□□□□□ -1.63
CDC28	YBR160W	TIM11	P81449	96 aa	Predicted RBP	4.84	□□□□□ -1.63
CDC28	YBR160W	RSN1	Q03516	953 aa		4.84	□□□□□ -1.63
CDC28	YBR160W	YMR155W	Q03795	547 aa		4.84	□□□□□ -1.63
CDC28	YBR160W	HEL2	Q05580	639 aa	Known RBP	4.84	□□□□□ -1.63
CDC28	YBR160W	ENT2	Q05785	613 aa		4.84	□□□□□ -1.63
CDC28	YBR160W	TSR2	Q06672	205 aa	Known RBP	4.84	□□□□□ -1.63
CDC28	YBR160W	YDL073W	Q07454	984 aa		4.84	□□□□□ -1.63
CDC28	YBR160W	YEH2	Q07950	538 aa		4.84	□□□□□ -1.63
CDC28	YBR160W	ESA1	Q08649	445 aa		4.84	□□□□□ -1.63
CDC28	YBR160W	TRE2	Q08693	809 aa		4.84	□□□□□ -1.63
CDC28	YBR160W	RSA1	Q08932	381 aa		4.84	□□□□□ -1.63
CDC28	YBR160W	TMA7	Q3E764	64 aa	Known RBP	4.84	□□□□□ -1.63
CDC28	YBR160W	FBP1	P09201	348 aa		4.83	□□□□□ -1.64
CDC28	YBR160W	NMT1	P14743	455 aa		4.83	□□□□□ -1.64
CDC28	YBR160W	ATP12	P22135	325 aa		4.83	□□□□□ -1.64
CDC28	YBR160W	RFA1	P22336	621 aa	Known RBP	4.83	□□□□□ -1.64
CDC28	YBR160W	PCL2	P25693	308 aa		4.83	□□□□□ -1.64
CDC28	YBR160W	ACH1	P32316	526 aa		4.83	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 17.4 ms