RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 MYO1HQ8N1T3 1032 aa3.59□□□□□ -1.83
VIM-210ENST00000637053 RNF214Q8ND24 703 aa3.59□□□□□ -1.83
VIM-210ENST00000637053 TTC8Q8TAM2 541 aa3.59□□□□□ -1.83
VIM-210ENST00000637053 GTF3C2Q8WUA4 911 aaPredicted RBP3.59□□□□□ -1.83
VIM-210ENST00000637053 SKA1Q96BD8 255 aa3.59□□□□□ -1.83
VIM-210ENST00000637053 PGBD4Q96DM1 585 aa3.59□□□□□ -1.83
VIM-210ENST00000637053 CCDC34Q96HJ3 373 aa3.59□□□□□ -1.83
VIM-210ENST00000637053 TMEM87BQ96K49 555 aa3.59□□□□□ -1.83
VIM-210ENST00000637053 ALPK1Q96QP1 1244 aa3.59□□□□□ -1.83
VIM-210ENST00000637053 PAIP2Q9BPZ3 127 aaKnown RBP3.59□□□□□ -1.83
VIM-210ENST00000637053 RIC8AQ9NPQ8 531 aa3.59□□□□□ -1.83
VIM-210ENST00000637053 RBM28Q9NW13 759 aaKnown RBP3.59□□□□□ -1.83
VIM-210ENST00000637053 SNTG2Q9NY99 539 aa3.59□□□□□ -1.83
VIM-210ENST00000637053 SIRPGQ9P1W8 387 aa3.59□□□□□ -1.83
VIM-210ENST00000637053 MAFFQ9ULX9 164 aa3.59□□□□□ -1.83
VIM-210ENST00000637053 DNAJC25-GNG10A0A024R161 153 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 FAM221BA6H8Z2 402 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 OTOL1A6NHN0 477 aaPredicted RBP3.58□□□□□ -1.84
VIM-210ENST00000637053 hCG_1984214I3L0E3 225 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 LDHBP07195 334 aaKnown RBP3.58□□□□□ -1.84
VIM-210ENST00000637053 ADRB1P08588 477 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 IFIT2P09913 472 aaKnown RBP3.58□□□□□ -1.84
VIM-210ENST00000637053 NPR3P17342 541 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 PSMA3P25788 255 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 TRHRP34981 398 aaPredicted RBP3.58□□□□□ -1.84
VIM-210ENST00000637053 ERVK-24P63145 666 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 SATB1Q01826 763 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 MCL1Q07820 350 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 KIAA2012Q0VF49 1180 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 IFT88Q13099 833 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 RASA3Q14644 834 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 CDKAL1Q5VV42 579 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 TSHZ3Q63HK5 1081 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 SLC4A10Q6U841 1118 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 KRT26Q7Z3Y9 468 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 TMC7Q7Z402 723 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 TTC6Q86TZ1 520 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 RASSF3Q86WH2 238 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 ANKRD42Q8N9B4 389 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 ACRBPQ8NEB7 543 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 STK35Q8TDR2 534 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 NELL1Q92832 810 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 JARID2Q92833 1246 aaPredicted RBP3.58□□□□□ -1.84
VIM-210ENST00000637053 RPGRQ92834 1020 aaKnown RBP3.58□□□□□ -1.84
VIM-210ENST00000637053 SMARCC1Q92922 1105 aaPredicted RBP3.58□□□□□ -1.84
VIM-210ENST00000637053 ITFG2Q969R8 447 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 TBC1D20Q96BZ9 403 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 ZNF496Q96IT1 587 aaPredicted RBP3.58□□□□□ -1.84
VIM-210ENST00000637053 MPP4Q96JB8 637 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 FAM210AQ96ND0 272 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 DEPDC7Q96QD5 511 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 FAM126AQ9BYI3 521 aaPredicted RBP3.58□□□□□ -1.84
VIM-210ENST00000637053 C22orf23Q9BZE7 217 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 XPO4Q9C0E2 1151 aaKnown RBP3.58□□□□□ -1.84
VIM-210ENST00000637053 DDX24Q9GZR7 859 aaKnown RBP eCLIP3.58□□□□□ -1.84
VIM-210ENST00000637053 SP110Q9HB58 689 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 ABCB6Q9NP58 842 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 CCDC87Q9NVE4 849 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 SLAMF8Q9P0V8 285 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 PGAP2Q9UHJ9 254 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 SPG7Q9UQ90 795 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 ATP8A1Q9Y2Q0 1164 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 DAAM1Q9Y4D1 1078 aa3.58□□□□□ -1.84
VIM-210ENST00000637053 GTPBP10A4D1E9 387 aaKnown RBP3.57□□□□□ -1.84
VIM-210ENST00000637053 GOLGA6L22H0YM25 854 aa3.57□□□□□ -1.84
VIM-210ENST00000637053 H3BS24 57 aa3.57□□□□□ -1.84
VIM-210ENST00000637053 TREHO43280 583 aa3.57□□□□□ -1.84
VIM-210ENST00000637053 COQ9O75208 318 aa3.57□□□□□ -1.84
VIM-210ENST00000637053 TPM2P07951 284 aa3.57□□□□□ -1.84
VIM-210ENST00000637053 U2AF1L5P0DN76 240 aaPredicted RBP3.57□□□□□ -1.84
VIM-210ENST00000637053 POU3F3P20264 500 aaPredicted RBP3.57□□□□□ -1.84
VIM-210ENST00000637053 GJA8P48165 433 aa3.57□□□□□ -1.84
VIM-210ENST00000637053 SARSP49591 514 aaKnown RBP3.57□□□□□ -1.84
VIM-210ENST00000637053 PPM1FP49593 454 aaPredicted RBP3.57□□□□□ -1.84
VIM-210ENST00000637053 U2AF1Q01081 240 aaKnown RBP eCLIP3.57□□□□□ -1.84
VIM-210ENST00000637053 NUCB1Q02818 461 aa3.57□□□□□ -1.84
VIM-210ENST00000637053 PTPN12Q05209 780 aaKnown RBP3.57□□□□□ -1.84
VIM-210ENST00000637053 PUM3Q15397 648 aaKnown RBP3.57□□□□□ -1.84
VIM-210ENST00000637053 HSP90B2PQ58FF3 399 aa3.57□□□□□ -1.84
VIM-210ENST00000637053 DNAJC21Q5F1R6 531 aaKnown RBP3.57□□□□□ -1.84
VIM-210ENST00000637053 PPM1JQ5JR12 505 aa3.57□□□□□ -1.84
VIM-210ENST00000637053 CCDC158Q5M9N0 1113 aa3.57□□□□□ -1.84
VIM-210ENST00000637053 WDR45BQ5MNZ6 344 aa3.57□□□□□ -1.84
VIM-210ENST00000637053 JAKMIP3Q5VZ66 844 aa3.57□□□□□ -1.84
VIM-210ENST00000637053 PPP4R3AQ6IN85 833 aa3.57□□□□□ -1.84
VIM-210ENST00000637053 ALKBH2Q6NS38 261 aa3.57□□□□□ -1.84
VIM-210ENST00000637053 CFAP161Q6P656 301 aa3.57□□□□□ -1.84
VIM-210ENST00000637053 ARHGEF25Q86VW2 580 aa3.57□□□□□ -1.84
VIM-210ENST00000637053 SNX32Q86XE0 403 aa3.57□□□□□ -1.84
VIM-210ENST00000637053 HOMER1Q86YM7 354 aa3.57□□□□□ -1.84
VIM-210ENST00000637053 IFNL2Q8IZJ0 200 aa3.57□□□□□ -1.84
VIM-210ENST00000637053 ARL6IP6Q8N6S5 226 aa3.57□□□□□ -1.84
VIM-210ENST00000637053 FBXO41Q8TF61 875 aa3.57□□□□□ -1.84
VIM-210ENST00000637053 MYLIPQ8WY64 445 aa3.57□□□□□ -1.84
VIM-210ENST00000637053 CENPTQ96BT3 561 aa3.57□□□□□ -1.84
VIM-210ENST00000637053 TRMT2BQ96GJ1 504 aaKnown RBP3.57□□□□□ -1.84
VIM-210ENST00000637053 IWS1Q96ST2 819 aa3.57□□□□□ -1.84
VIM-210ENST00000637053 MAP3K14Q99558 947 aa3.57□□□□□ -1.84
VIM-210ENST00000637053 RBCK1Q9BYM8 510 aa3.57□□□□□ -1.84
VIM-210ENST00000637053 RNF32Q9H0A6 362 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms