RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 FEM1BQ9UK73 627 aa15.99■□□□□ 0.15
LIG3-205ENST00000585941 H7C1D1 291 aa15.99■□□□□ 0.15
LIG3-205ENST00000585941 PIK3CDO00329 1044 aa15.99■□□□□ 0.15
LIG3-205ENST00000585941 MEIS2O14770 477 aa15.99■□□□□ 0.15
LIG3-205ENST00000585941 RPN1P04843 607 aaKnown RBP15.99■□□□□ 0.15
LIG3-205ENST00000585941 CDC25AP30304 524 aa15.99■□□□□ 0.15
LIG3-205ENST00000585941 KCNB1Q14721 858 aa15.99■□□□□ 0.15
LIG3-205ENST00000585941 NAALADL2Q58DX5 795 aa15.99■□□□□ 0.15
LIG3-205ENST00000585941 FAM83BQ5T0W9 1011 aa15.99■□□□□ 0.15
LIG3-205ENST00000585941 SPICE1Q8N0Z3 855 aa15.99■□□□□ 0.15
LIG3-205ENST00000585941 HSD3B7Q9H2F3 369 aa15.99■□□□□ 0.15
LIG3-205ENST00000585941 IFNKQ9P0W0 207 aa15.99■□□□□ 0.15
LIG3-205ENST00000585941 GJA3Q9Y6H8 435 aa15.99■□□□□ 0.15
LIG3-205ENST00000585941 SHTN1A0MZ66 631 aa15.98■□□□□ 0.15
LIG3-205ENST00000585941 SPDYE3A6NKU9 549 aa15.98■□□□□ 0.15
LIG3-205ENST00000585941 PP2D1A8MPX8 630 aa15.98■□□□□ 0.15
LIG3-205ENST00000585941 PHF20L1A8MW92 1017 aa15.98■□□□□ 0.15
LIG3-205ENST00000585941 SLC37A4O43826 429 aa15.98■□□□□ 0.15
LIG3-205ENST00000585941 EDIL3O43854 480 aa15.98■□□□□ 0.15
LIG3-205ENST00000585941 CTNND1O60716 968 aaKnown RBP15.98■□□□□ 0.15
LIG3-205ENST00000585941 PTGS1P23219 599 aa15.98■□□□□ 0.15
LIG3-205ENST00000585941 CUL4BQ13620 913 aa15.98■□□□□ 0.15
LIG3-205ENST00000585941 KIF4BQ2VIQ3 1234 aa15.98■□□□□ 0.15
LIG3-205ENST00000585941 ZNF658Q5TYW1 1059 aaPredicted RBP15.98■□□□□ 0.15
LIG3-205ENST00000585941 DCAF15Q66K64 600 aa15.98■□□□□ 0.15
LIG3-205ENST00000585941 LPAR1Q92633 364 aa15.98■□□□□ 0.15
LIG3-205ENST00000585941 MBOAT7Q96N66 472 aa15.98■□□□□ 0.15
LIG3-205ENST00000585941 MTRQ99707 1265 aa15.98■□□□□ 0.15
LIG3-205ENST00000585941 XPO4Q9C0E2 1151 aaKnown RBP15.98■□□□□ 0.15
LIG3-205ENST00000585941 FANCLQ9NW38 375 aa15.98■□□□□ 0.15
LIG3-205ENST00000585941 PSDA5PKW4 1024 aaPredicted RBP15.97■□□□□ 0.15
LIG3-205ENST00000585941 USP17L15C9J2P7 530 aa15.97■□□□□ 0.15
LIG3-205ENST00000585941 USP17L13C9JLJ4 530 aa15.97■□□□□ 0.15
LIG3-205ENST00000585941 USP17L11C9JVI0 530 aa15.97■□□□□ 0.15
LIG3-205ENST00000585941 USP17L18D6R9N7 530 aa15.97■□□□□ 0.15
LIG3-205ENST00000585941 USP17L22D6RA61 530 aa15.97■□□□□ 0.15
LIG3-205ENST00000585941 USP17L17D6RBQ6 530 aa15.97■□□□□ 0.15
LIG3-205ENST00000585941 USP17L19D6RCP7 530 aa15.97■□□□□ 0.15
LIG3-205ENST00000585941 USP17L20D6RJB6 530 aa15.97■□□□□ 0.15
LIG3-205ENST00000585941 MARCH6O60337 910 aa15.97■□□□□ 0.15
LIG3-205ENST00000585941 SERPINC1P01008 464 aa15.97■□□□□ 0.15
LIG3-205ENST00000585941 PLCG1P19174 1290 aa15.97■□□□□ 0.15
LIG3-205ENST00000585941 HOXA7P31268 230 aaPredicted RBP15.97■□□□□ 0.15
LIG3-205ENST00000585941 UBASH3AP57075 661 aa15.97■□□□□ 0.15
LIG3-205ENST00000585941 USP17L24Q0WX57 530 aa15.97■□□□□ 0.15
LIG3-205ENST00000585941 SPATA1Q5VX52 437 aa15.97■□□□□ 0.15
LIG3-205ENST00000585941 KRT79Q5XKE5 535 aa15.97■□□□□ 0.15
LIG3-205ENST00000585941 USP17L6PQ6QN14 398 aa15.97■□□□□ 0.15
LIG3-205ENST00000585941 APOBEC3FQ8IUX4 373 aaKnown RBP15.97■□□□□ 0.15
LIG3-205ENST00000585941 CDAN1Q8IWY9 1227 aa15.97■□□□□ 0.15
LIG3-205ENST00000585941 SLFN12Q8IYM2 578 aa15.97■□□□□ 0.15
LIG3-205ENST00000585941 CDK5RAP3Q96JB5 506 aa15.97■□□□□ 0.15
LIG3-205ENST00000585941 LRRC27Q9C0I9 530 aa15.97■□□□□ 0.15
LIG3-205ENST00000585941 RANBP17Q9H2T7 1088 aaKnown RBP15.97■□□□□ 0.15
LIG3-205ENST00000585941 NFE2L3Q9Y4A8 694 aa15.97■□□□□ 0.15
LIG3-205ENST00000585941 TBX3O15119 743 aa15.96■□□□□ 0.15
LIG3-205ENST00000585941 ZNF18P17022 549 aa15.96■□□□□ 0.15
LIG3-205ENST00000585941 SREBF1P36956 1147 aa15.96■□□□□ 0.15
LIG3-205ENST00000585941 PPP1R2P41236 205 aa15.96■□□□□ 0.15
LIG3-205ENST00000585941 USH1GQ495M9 461 aa15.96■□□□□ 0.15
LIG3-205ENST00000585941 ZNF830Q96NB3 372 aaPredicted RBP15.96■□□□□ 0.15
LIG3-205ENST00000585941 FEZ1Q99689 392 aa15.96■□□□□ 0.15
LIG3-205ENST00000585941 BLZF1Q9H2G9 400 aa15.96■□□□□ 0.15
LIG3-205ENST00000585941 HACL1Q9UJ83 578 aa15.96■□□□□ 0.15
LIG3-205ENST00000585941 SYNRGQ9UMZ2 1314 aa15.96■□□□□ 0.15
LIG3-205ENST00000585941 PPP1R3GB7ZBB8 358 aa15.95■□□□□ 0.14
LIG3-205ENST00000585941 CDK11BP21127 795 aaKnown RBP15.95■□□□□ 0.14
LIG3-205ENST00000585941 ARHGAP4P98171 946 aa15.95■□□□□ 0.14
LIG3-205ENST00000585941 FMR1Q06787 632 aaKnown RBP eCLIP15.95■□□□□ 0.145e-6■■■■□ 22.9
LIG3-205ENST00000585941 TBC1D10BQ4KMP7 808 aaPredicted RBP15.95■□□□□ 0.14
LIG3-205ENST00000585941 KIAA1755Q5JYT7 1200 aa15.95■□□□□ 0.14
LIG3-205ENST00000585941 SAMD7Q7Z3H4 446 aa15.95■□□□□ 0.14
LIG3-205ENST00000585941 NLGN2Q8NFZ4 835 aa15.95■□□□□ 0.14
LIG3-205ENST00000585941 CRYGNQ8WXF5 182 aa15.95■□□□□ 0.14
LIG3-205ENST00000585941 STAMQ92783 540 aa15.95■□□□□ 0.14
LIG3-205ENST00000585941 C7orf25Q9BPX7 421 aa15.95■□□□□ 0.14
LIG3-205ENST00000585941 MMTAG2Q9BU76 263 aaKnown RBP15.95■□□□□ 0.14
LIG3-205ENST00000585941 KIAA1683Q9H0B3 1180 aa15.95■□□□□ 0.14
LIG3-205ENST00000585941 DEFB129Q9H1M3 183 aa15.95■□□□□ 0.14
LIG3-205ENST00000585941 KCNF1Q9H3M0 494 aa15.95■□□□□ 0.14
LIG3-205ENST00000585941 EHMT1Q9H9B1 1298 aa15.95■□□□□ 0.14
LIG3-205ENST00000585941 SPON1Q9HCB6 807 aa15.95■□□□□ 0.14
LIG3-205ENST00000585941 NRBP1Q9UHY1 535 aa15.95■□□□□ 0.14
LIG3-205ENST00000585941 PCDHA12Q9UN75 941 aa15.95■□□□□ 0.14
LIG3-205ENST00000585941 MRPL11Q9Y3B7 192 aaKnown RBP15.95■□□□□ 0.14
LIG3-205ENST00000585941 STK24Q9Y6E0 443 aa15.95■□□□□ 0.14
LIG3-205ENST00000585941 WDR46O15213 610 aaKnown RBP15.95■□□□□ 0.14
LIG3-205ENST00000585941 RHOBTB3O94955 611 aa15.95■□□□□ 0.14
LIG3-205ENST00000585941 EGFRP00533 1210 aa15.95■□□□□ 0.14
LIG3-205ENST00000585941 ATP1A3P13637 1013 aa15.95■□□□□ 0.14
LIG3-205ENST00000585941 LMNB1P20700 586 aa15.95■□□□□ 0.14
LIG3-205ENST00000585941 CASP1P29466 404 aa15.95■□□□□ 0.14
LIG3-205ENST00000585941 PRELPP51888 382 aa15.95■□□□□ 0.14
LIG3-205ENST00000585941 STIM1Q13586 685 aa15.95■□□□□ 0.14
LIG3-205ENST00000585941 Q4G0T1 1027 aa15.95■□□□□ 0.14
LIG3-205ENST00000585941 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.95■□□□□ 0.14
LIG3-205ENST00000585941 GPC2Q8N158 579 aa15.95■□□□□ 0.14
LIG3-205ENST00000585941 CCDC150Q8NCX0 1101 aa15.95■□□□□ 0.14
LIG3-205ENST00000585941 KIAA1524Q8TCG1 905 aa15.95■□□□□ 0.14
LIG3-205ENST00000585941 ZNF341Q9BYN7 854 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms