RNA–Protein interactions for RNA: ENST00000566612.5

CDH1-210, Transcript of cadherin 1, humanhuman

TSL 1 (best)

Gene CDH1, Length 4,138 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-210ENST00000566612 HSF2BPO75031 334 aa12.85□□□□□ -0.35
CDH1-210ENST00000566612 KIAA0754O94854 1291 aa12.85□□□□□ -0.35
CDH1-210ENST00000566612 NDUFA10O95299 355 aa12.85□□□□□ -0.35
CDH1-210ENST00000566612 EPB41P11171 864 aaKnown RBP12.85□□□□□ -0.35
CDH1-210ENST00000566612 GABPB1Q06547 395 aaPredicted RBP12.85□□□□□ -0.35
CDH1-210ENST00000566612 SEC23AQ15436 765 aa12.85□□□□□ -0.35
CDH1-210ENST00000566612 SFMBT2Q5VUG0 894 aa12.85□□□□□ -0.35
CDH1-210ENST00000566612 FBXO11Q86XK2 927 aa12.85□□□□□ -0.35
CDH1-210ENST00000566612 POTEDQ86YR6 584 aa12.85□□□□□ -0.35
CDH1-210ENST00000566612 TRPC5Q9UL62 973 aaPredicted RBP12.85□□□□□ -0.35
CDH1-210ENST00000566612 CNTNAP5Q8WYK1 1306 aa12.84□□□□□ -0.35
CDH1-210ENST00000566612 ADAM9Q13443 819 aa12.84□□□□□ -0.35
CDH1-210ENST00000566612 GPATCH4Q5T3I0 446 aaKnown RBP12.84□□□□□ -0.35
CDH1-210ENST00000566612 CTNNBL1Q8WYA6 563 aaPredicted RBP12.84□□□□□ -0.35
CDH1-210ENST00000566612 RABGGTAQ92696 567 aa12.84□□□□□ -0.35
CDH1-210ENST00000566612 BICD1Q96G01 975 aa12.84□□□□□ -0.35
CDH1-210ENST00000566612 NOX5Q96PH1 765 aa12.84□□□□□ -0.35
CDH1-210ENST00000566612 GLT8D2Q9H1C3 349 aa12.84□□□□□ -0.35
CDH1-210ENST00000566612 TMEM60Q9H2L4 133 aa12.84□□□□□ -0.35
CDH1-210ENST00000566612 FOXP2O15409 715 aa12.84□□□□□ -0.35
CDH1-210ENST00000566612 SETQ01105 290 aaPredicted RBP12.84□□□□□ -0.35
CDH1-210ENST00000566612 TUBB2AQ13885 445 aa12.84□□□□□ -0.35
CDH1-210ENST00000566612 ASIC2Q16515 512 aa12.84□□□□□ -0.35
CDH1-210ENST00000566612 IFI16Q16666 785 aaKnown RBP12.84□□□□□ -0.35
CDH1-210ENST00000566612 MB21D1Q8N884 522 aa12.84□□□□□ -0.35
CDH1-210ENST00000566612 TUBB2BQ9BVA1 445 aa12.84□□□□□ -0.35
CDH1-210ENST00000566612 DNAJC5Q9H3Z4 198 aa12.84□□□□□ -0.35
CDH1-210ENST00000566612 ABCB5Q2M3G0 1257 aa12.84□□□□□ -0.35
CDH1-210ENST00000566612 RGS22Q8NE09 1264 aa12.84□□□□□ -0.35
CDH1-210ENST00000566612 MXD3Q9BW11 206 aa12.84□□□□□ -0.35
CDH1-210ENST00000566612 CUEDC2Q9H467 287 aa12.84□□□□□ -0.35
CDH1-210ENST00000566612 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.84□□□□□ -0.35
CDH1-210ENST00000566612 SH3GLB2Q9NR46 395 aa12.84□□□□□ -0.35
CDH1-210ENST00000566612 PCDHA6Q9UN73 950 aa12.84□□□□□ -0.35
CDH1-210ENST00000566612 PCDHA8Q9Y5H6 950 aa12.84□□□□□ -0.35
CDH1-210ENST00000566612 ADGRG1Q9Y653 693 aa12.84□□□□□ -0.35
CDH1-210ENST00000566612 CACNA1FO60840 1977 aa12.84□□□□□ -0.35
CDH1-210ENST00000566612 TDP2O95551 362 aa12.83□□□□□ -0.36
CDH1-210ENST00000566612 MMP10P09238 476 aa12.83□□□□□ -0.36
CDH1-210ENST00000566612 FCER1AP12319 257 aa12.83□□□□□ -0.36
CDH1-210ENST00000566612 AKR1B1P15121 316 aa12.83□□□□□ -0.36
CDH1-210ENST00000566612 FXR1P51114 621 aaKnown RBP eCLIP12.83□□□□□ -0.36
CDH1-210ENST00000566612 VAV2P52735 878 aa12.83□□□□□ -0.36
CDH1-210ENST00000566612 EVX2Q03828 476 aa12.83□□□□□ -0.36
CDH1-210ENST00000566612 PRR5LQ6MZQ0 368 aa12.83□□□□□ -0.36
CDH1-210ENST00000566612 ABHD10Q9NUJ1 306 aa12.83□□□□□ -0.36
CDH1-210ENST00000566612 TTC26A0AVF1 554 aa12.83□□□□□ -0.36
CDH1-210ENST00000566612 CXCR5P32302 372 aa12.83□□□□□ -0.36
CDH1-210ENST00000566612 DPYDQ12882 1025 aa12.83□□□□□ -0.36
CDH1-210ENST00000566612 WHAMMP3Q1A5X7 153 aa12.83□□□□□ -0.36
CDH1-210ENST00000566612 C8orf74Q6P047 294 aa12.83□□□□□ -0.36
CDH1-210ENST00000566612 TC2NQ8N9U0 490 aa12.83□□□□□ -0.36
CDH1-210ENST00000566612 GJA10Q969M2 543 aa12.83□□□□□ -0.36
CDH1-210ENST00000566612 SELENOOQ9BVL4 669 aa12.83□□□□□ -0.36
CDH1-210ENST00000566612 ANAPC4Q9UJX5 808 aa12.83□□□□□ -0.36
CDH1-210ENST00000566612 SHTN1A0MZ66 631 aa12.83□□□□□ -0.36
CDH1-210ENST00000566612 TUBBP07437 444 aa12.83□□□□□ -0.36
CDH1-210ENST00000566612 RASSF7Q02833 373 aa12.83□□□□□ -0.36
CDH1-210ENST00000566612 DLGAP5Q15398 846 aa12.83□□□□□ -0.36
CDH1-210ENST00000566612 USP17L10C9JJH3 530 aa12.82□□□□□ -0.36
CDH1-210ENST00000566612 MRPS25P82663 173 aaKnown RBP12.82□□□□□ -0.36
CDH1-210ENST00000566612 PKN1Q16512 942 aa12.82□□□□□ -0.36
CDH1-210ENST00000566612 LONRF2Q1L5Z9 754 aa12.82□□□□□ -0.36
CDH1-210ENST00000566612 PTF1AQ7RTS3 328 aa12.82□□□□□ -0.36
CDH1-210ENST00000566612 KLHL7Q8IXQ5 586 aa12.82□□□□□ -0.36
CDH1-210ENST00000566612 DHX37Q8IY37 1157 aaKnown RBP12.82□□□□□ -0.36
CDH1-210ENST00000566612 NEDD1Q8NHV4 660 aa12.82□□□□□ -0.36
CDH1-210ENST00000566612 CSRNP1Q96S65 589 aa12.82□□□□□ -0.36
CDH1-210ENST00000566612 FRMD4BQ9Y2L6 1034 aa12.82□□□□□ -0.36
CDH1-210ENST00000566612 RIC1Q4ADV7 1423 aa12.82□□□□□ -0.36
CDH1-210ENST00000566612 ARHGEF35A5YM69 484 aa12.82□□□□□ -0.36
CDH1-210ENST00000566612 MYCLP12524 364 aaPredicted RBP12.82□□□□□ -0.36
CDH1-210ENST00000566612 CD44P16070 742 aaKnown RBP12.82□□□□□ -0.36
CDH1-210ENST00000566612 HOXA13P31271 388 aaPredicted RBP12.82□□□□□ -0.36
CDH1-210ENST00000566612 SBK1Q52WX2 424 aa12.82□□□□□ -0.36
CDH1-210ENST00000566612 TTBK2Q6IQ55 1244 aa12.82□□□□□ -0.36
CDH1-210ENST00000566612 SND1Q7KZF4 910 aaKnown RBP eCLIP12.82□□□□□ -0.368e-7■■■■□ 21
CDH1-210ENST00000566612 CHP1Q99653 195 aa12.82□□□□□ -0.36
CDH1-210ENST00000566612 AMNQ9BXJ7 453 aa12.82□□□□□ -0.36
CDH1-210ENST00000566612 ARMCX3Q9UH62 379 aaPredicted RBP12.82□□□□□ -0.36
CDH1-210ENST00000566612 VEGFAP15692 232 aaPredicted RBP12.82□□□□□ -0.36
CDH1-210ENST00000566612 RASA1P20936 1047 aa12.82□□□□□ -0.36
CDH1-210ENST00000566612 BRD3Q15059 726 aa12.82□□□□□ -0.36
CDH1-210ENST00000566612 NYAP1Q6ZVC0 841 aa12.82□□□□□ -0.36
CDH1-210ENST00000566612 DDX12PQ92771 950 aa12.82□□□□□ -0.36
CDH1-210ENST00000566612 CCDC17Q96LX7 622 aa12.82□□□□□ -0.36
CDH1-210ENST00000566612 PDE11AQ9HCR9 933 aa12.82□□□□□ -0.36
CDH1-210ENST00000566612 ZEB2O60315 1214 aa12.81□□□□□ -0.36
CDH1-210ENST00000566612 SRGAP2O75044 1071 aa12.81□□□□□ -0.36
CDH1-210ENST00000566612 CYP2J2P51589 502 aa12.81□□□□□ -0.36
CDH1-210ENST00000566612 NR1I3Q14994 352 aa12.81□□□□□ -0.36
CDH1-210ENST00000566612 COA1Q9GZY4 146 aa12.81□□□□□ -0.36
CDH1-210ENST00000566612 NDST4Q9H3R1 872 aa12.81□□□□□ -0.36
CDH1-210ENST00000566612 KANSL2Q9H9L4 492 aa12.81□□□□□ -0.36
CDH1-210ENST00000566612 NHEJ1Q9H9Q4 299 aaPredicted RBP12.81□□□□□ -0.36
CDH1-210ENST00000566612 ADD3Q9UEY8 706 aaKnown RBP12.81□□□□□ -0.36
CDH1-210ENST00000566612 DDX41Q9UJV9 622 aaKnown RBP12.81□□□□□ -0.36
CDH1-210ENST00000566612 KDM3AQ9Y4C1 1321 aa12.81□□□□□ -0.36
CDH1-210ENST00000566612 PNMA6FA0A0J9YX94 578 aa12.81□□□□□ -0.36
CDH1-210ENST00000566612 A0A1B0GTH6 734 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms