RNA–Protein interactions for RNA: ENST00000566612.5

CDH1-210, Transcript of cadherin 1, humanhuman

TSL 1 (best)

Gene CDH1, Length 4,138 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-210ENST00000566612 NISCHQ9Y2I1 1504 aa21.97■■□□□ 1.11
CDH1-210ENST00000566612 DCAF8L2P0C7V8 631 aa20.56■□□□□ 0.88
CDH1-210ENST00000566612 SHROOM4Q9ULL8 1493 aa20.14■□□□□ 0.81
CDH1-210ENST00000566612 SUPT5HO00267 1087 aaKnown RBP20.07■□□□□ 0.8
CDH1-210ENST00000566612 EHMT2Q96KQ7 1210 aa19■□□□□ 0.63
CDH1-210ENST00000566612 FAM9AQ8IZU1 332 aaPredicted RBP18.77■□□□□ 0.6
CDH1-210ENST00000566612 PCGF6Q9BYE7 350 aa18.73■□□□□ 0.59
CDH1-210ENST00000566612 CHIC1Q5VXU3 224 aa18.63■□□□□ 0.57
CDH1-210ENST00000566612 TRIM41Q8WV44 630 aa18.52■□□□□ 0.56
CDH1-210ENST00000566612 LOC105371045A0A1W2PR82 267 aa18.46■□□□□ 0.55
CDH1-210ENST00000566612 ZCCHC6Q5VYS8 1495 aaKnown RBP18.35■□□□□ 0.53
CDH1-210ENST00000566612 TTBK1Q5TCY1 1321 aaPredicted RBP18.31■□□□□ 0.52
CDH1-210ENST00000566612 ABCC9O60706 1549 aa18.21■□□□□ 0.51
CDH1-210ENST00000566612 PPARGC1BQ86YN6 1023 aaKnown RBP18.17■□□□□ 0.5
CDH1-210ENST00000566612 HRCP23327 699 aa18.11■□□□□ 0.49
CDH1-210ENST00000566612 CCDC180Q9P1Z9 1646 aa18.11■□□□□ 0.49
CDH1-210ENST00000566612 RANGAP1P46060 587 aaPredicted RBP18.06■□□□□ 0.48
CDH1-210ENST00000566612 TRIM26Q12899 539 aaPredicted RBP18.02■□□□□ 0.48
CDH1-210ENST00000566612 UBTFP17480 764 aaKnown RBP17.98■□□□□ 0.47
CDH1-210ENST00000566612 APLP2Q06481 763 aa17.93■□□□□ 0.46
CDH1-210ENST00000566612 CCER1Q8TC90 406 aaPredicted RBP17.88■□□□□ 0.45
CDH1-210ENST00000566612 PABPN1Q86U42 306 aaKnown RBP eCLIP17.88■□□□□ 0.45
CDH1-210ENST00000566612 SCRIBQ14160 1630 aa17.85■□□□□ 0.45
CDH1-210ENST00000566612 ZEB1P37275 1124 aaPredicted RBP17.84■□□□□ 0.45
CDH1-210ENST00000566612 MYO15BQ96JP2 1530 aa17.82■□□□□ 0.44
CDH1-210ENST00000566612 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.58■□□□□ 0.41
CDH1-210ENST00000566612 RSF1Q96T23 1441 aaPredicted RBP17.58■□□□□ 0.41
CDH1-210ENST00000566612 ATP1B4Q9UN42 357 aaPredicted RBP17.53■□□□□ 0.4
CDH1-210ENST00000566612 DCAF1Q9Y4B6 1507 aa17.51■□□□□ 0.39
CDH1-210ENST00000566612 HNRNPUL2Q1KMD3 747 aaKnown RBP17.49■□□□□ 0.39
CDH1-210ENST00000566612 CECR2Q9BXF3 1484 aa17.37■□□□□ 0.37
CDH1-210ENST00000566612 ITGAEP38570 1179 aa17.35■□□□□ 0.37
CDH1-210ENST00000566612 CSRNP3Q8WYN3 585 aa17.35■□□□□ 0.37
CDH1-210ENST00000566612 YTHDC1Q96MU7 727 aaKnown RBP17.34■□□□□ 0.37
CDH1-210ENST00000566612 CENPBP07199 599 aaPredicted RBP17.32■□□□□ 0.36
CDH1-210ENST00000566612 NACADO15069 1562 aa17.26■□□□□ 0.35
CDH1-210ENST00000566612 RB1CC1Q8TDY2 1594 aa17.19■□□□□ 0.34
CDH1-210ENST00000566612 DIEXFQ68CQ4 756 aaKnown RBP17.16■□□□□ 0.34
CDH1-210ENST00000566612 MROH2BQ7Z745 1585 aa17.15■□□□□ 0.34
CDH1-210ENST00000566612 BAZ1AQ9NRL2 1556 aaPredicted RBP17■□□□□ 0.31
CDH1-210ENST00000566612 P3H3Q8IVL6 736 aa16.96■□□□□ 0.31
CDH1-210ENST00000566612 FAM50AQ14320 339 aaKnown RBP16.95■□□□□ 0.3
CDH1-210ENST00000566612 WIZO95785 1651 aa16.94■□□□□ 0.3
CDH1-210ENST00000566612 PELP1Q8IZL8 1130 aaKnown RBP16.94■□□□□ 0.3
CDH1-210ENST00000566612 CEP162Q5TB80 1403 aa16.92■□□□□ 0.3
CDH1-210ENST00000566612 SOGA1O94964 1423 aa16.91■□□□□ 0.3
CDH1-210ENST00000566612 WRNQ14191 1432 aaPredicted RBP eCLIP16.89■□□□□ 0.29
CDH1-210ENST00000566612 ZNF316A6NFI3 1004 aaPredicted RBP16.89■□□□□ 0.29
CDH1-210ENST00000566612 CCDC88BA6NC98 1476 aa16.88■□□□□ 0.29
CDH1-210ENST00000566612 ABCC8Q09428 1581 aa16.87■□□□□ 0.29
CDH1-210ENST00000566612 NEUROD1Q13562 356 aa16.83■□□□□ 0.29
CDH1-210ENST00000566612 CLIP1P30622 1438 aa16.82■□□□□ 0.28
CDH1-210ENST00000566612 BAZ1BQ9UIG0 1483 aaKnown RBP16.8■□□□□ 0.28
CDH1-210ENST00000566612 GTF3C3Q9Y5Q9 886 aa16.8■□□□□ 0.28
CDH1-210ENST00000566612 TNIKQ9UKE5 1360 aa16.8■□□□□ 0.28
CDH1-210ENST00000566612 GOLGA3Q08378 1498 aa16.77■□□□□ 0.28
CDH1-210ENST00000566612 EEA1Q15075 1411 aa16.77■□□□□ 0.28
CDH1-210ENST00000566612 ACIN1Q9UKV3 1341 aaKnown RBP16.72■□□□□ 0.27
CDH1-210ENST00000566612 ARID3CA6NKF2 412 aa16.71■□□□□ 0.26
CDH1-210ENST00000566612 TOP2AP11388 1531 aaKnown RBP16.67■□□□□ 0.26
CDH1-210ENST00000566612 CNGB1Q14028 1251 aaPredicted RBP16.65■□□□□ 0.26
CDH1-210ENST00000566612 CEP164Q9UPV0 1460 aa16.64■□□□□ 0.25
CDH1-210ENST00000566612 RUSC2Q8N2Y8 1516 aa16.63■□□□□ 0.25
CDH1-210ENST00000566612 NEFLP07196 543 aa16.62■□□□□ 0.25
CDH1-210ENST00000566612 TRIM52Q96A61 297 aa16.62■□□□□ 0.25
CDH1-210ENST00000566612 POLR3GLQ9BT43 218 aa16.61■□□□□ 0.25
CDH1-210ENST00000566612 SCAF1Q9H7N4 1312 aaKnown RBP16.61■□□□□ 0.25
CDH1-210ENST00000566612 SMARCA4P51532 1647 aa16.6■□□□□ 0.25
CDH1-210ENST00000566612 FBLN2P98095 1184 aa16.57■□□□□ 0.24
CDH1-210ENST00000566612 MIER1Q8N108 512 aa16.56■□□□□ 0.24
CDH1-210ENST00000566612 KIF27Q86VH2 1401 aa16.53■□□□□ 0.24
CDH1-210ENST00000566612 ATAD2BQ9ULI0 1458 aa16.49■□□□□ 0.23
CDH1-210ENST00000566612 SMARCA2P51531 1590 aa16.47■□□□□ 0.23
CDH1-210ENST00000566612 KANK4Q5T7N3 995 aaPredicted RBP16.47■□□□□ 0.23
CDH1-210ENST00000566612 BCANQ96GW7 911 aa16.44■□□□□ 0.22
CDH1-210ENST00000566612 HIRIP3Q9BW71 556 aaPredicted RBP16.43■□□□□ 0.22
CDH1-210ENST00000566612 VPS8Q8N3P4 1428 aa16.43■□□□□ 0.22
CDH1-210ENST00000566612 CHIC2Q9UKJ5 165 aa16.43■□□□□ 0.22
CDH1-210ENST00000566612 DDX10Q13206 875 aaKnown RBP16.42■□□□□ 0.22
CDH1-210ENST00000566612 RAPGEF2Q9Y4G8 1499 aa16.41■□□□□ 0.22
CDH1-210ENST00000566612 ANP32CO43423 234 aa16.39■□□□□ 0.21
CDH1-210ENST00000566612 ZNF326Q5BKZ1 582 aaKnown RBP16.39■□□□□ 0.21
CDH1-210ENST00000566612 CUX2O14529 1486 aa16.38■□□□□ 0.21
CDH1-210ENST00000566612 ZNF777Q9ULD5 760 aaPredicted RBP16.36■□□□□ 0.21
CDH1-210ENST00000566612 MYT1LQ9UL68 1186 aa16.35■□□□□ 0.21
CDH1-210ENST00000566612 MTUS2Q5JR59 1369 aa16.35■□□□□ 0.21
CDH1-210ENST00000566612 CARMIL1Q5VZK9 1371 aa16.35■□□□□ 0.21
CDH1-210ENST00000566612 TONSLQ96HA7 1378 aa16.31■□□□□ 0.2
CDH1-210ENST00000566612 SIN3AQ96ST3 1273 aa16.31■□□□□ 0.2
CDH1-210ENST00000566612 CCNB3Q8WWL7 1395 aa16.29■□□□□ 0.2
CDH1-210ENST00000566612 ERICH6Q7L0X2 663 aa16.28■□□□□ 0.2
CDH1-210ENST00000566612 RRP7BPQ9NSQ0 103 aa16.28■□□□□ 0.2
CDH1-210ENST00000566612 CDK11AQ9UQ88 783 aaPredicted RBP16.22■□□□□ 0.19
CDH1-210ENST00000566612 CADPSQ9ULU8 1353 aa16.21■□□□□ 0.18
CDH1-210ENST00000566612 TDRD9Q8NDG6 1382 aaKnown RBP16.17■□□□□ 0.18
CDH1-210ENST00000566612 SYNJ1O43426 1573 aa16.17■□□□□ 0.18
CDH1-210ENST00000566612 CLSPNQ9HAW4 1339 aa16.16■□□□□ 0.18
CDH1-210ENST00000566612 CHMP7Q8WUX9 453 aaPredicted RBP16.15■□□□□ 0.18
CDH1-210ENST00000566612 FKBP8Q14318 412 aa16.14■□□□□ 0.17
CDH1-210ENST00000566612 FHAD1B1AJZ9 1412 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms