RNA–Protein interactions for RNA: ENST00000561242.1

TPM1-229, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 673 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-229ENST00000561242 ZNF467Q7Z7K2 595 aaPredicted RBP12.3□□□□□ -0.44
TPM1-229ENST00000561242 RMDN3Q96TC7 470 aa12.3□□□□□ -0.44
TPM1-229ENST00000561242 TINF2Q9BSI4 451 aa12.3□□□□□ -0.44
TPM1-229ENST00000561242 AGXT2Q9BYV1 514 aa12.3□□□□□ -0.44
TPM1-229ENST00000561242 AP5M1Q9H0R1 490 aa12.3□□□□□ -0.44
TPM1-229ENST00000561242 A1CFQ9NQ94 594 aaKnown RBP12.3□□□□□ -0.44
TPM1-229ENST00000561242 CYP39A1Q9NYL5 469 aa12.3□□□□□ -0.44
TPM1-229ENST00000561242 ORC3Q9UBD5 711 aaPredicted RBP12.3□□□□□ -0.44
TPM1-229ENST00000561242 NRBP1Q9UHY1 535 aa12.3□□□□□ -0.44
TPM1-229ENST00000561242 GJD2Q9UKL4 321 aa12.3□□□□□ -0.44
TPM1-229ENST00000561242 OTOFQ9HC10 1997 aa12.3□□□□□ -0.44
TPM1-229ENST00000561242 RPTORQ8N122 1335 aa12.3□□□□□ -0.44
TPM1-229ENST00000561242 CDK5RAP2Q96SN8 1893 aa12.29□□□□□ -0.44
TPM1-229ENST00000561242 hCG_1642624A0A1W2PR95 340 aa12.29□□□□□ -0.44
TPM1-229ENST00000561242 HOXC6P09630 235 aa12.29□□□□□ -0.44
TPM1-229ENST00000561242 RARBP10826 455 aa12.29□□□□□ -0.44
TPM1-229ENST00000561242 MYCLP12524 364 aaPredicted RBP12.29□□□□□ -0.44
TPM1-229ENST00000561242 CCND2P30279 289 aa12.29□□□□□ -0.44
TPM1-229ENST00000561242 RPS6P62753 249 aaKnown RBP12.29□□□□□ -0.44
TPM1-229ENST00000561242 BECN1Q14457 450 aa12.29□□□□□ -0.44
TPM1-229ENST00000561242 GNPTABQ3T906 1256 aa12.29□□□□□ -0.44
TPM1-229ENST00000561242 MUM1L1Q5H9M0 696 aa12.29□□□□□ -0.44
TPM1-229ENST00000561242 GALNT17Q6IS24 598 aa12.29□□□□□ -0.44
TPM1-229ENST00000561242 NLRX1Q86UT6 975 aa12.29□□□□□ -0.44
TPM1-229ENST00000561242 ARRDC4Q8NCT1 418 aa12.29□□□□□ -0.44
TPM1-229ENST00000561242 PHKBQ93100 1093 aa12.29□□□□□ -0.44
TPM1-229ENST00000561242 ABHD8Q96I13 439 aa12.29□□□□□ -0.44
TPM1-229ENST00000561242 MAML3Q96JK9 1138 aa12.29□□□□□ -0.44
TPM1-229ENST00000561242 IWS1Q96ST2 819 aa12.29□□□□□ -0.44
TPM1-229ENST00000561242 LLPHQ9BRT6 129 aaKnown RBP12.29□□□□□ -0.44
TPM1-229ENST00000561242 ABHD16BQ9H3Z7 469 aa12.29□□□□□ -0.44
TPM1-229ENST00000561242 NCOA5Q9HCD5 579 aaKnown RBP12.29□□□□□ -0.44
TPM1-229ENST00000561242 TPCN1Q9ULQ1 816 aa12.29□□□□□ -0.44
TPM1-229ENST00000561242 SIPA1L1O43166 1804 aa12.29□□□□□ -0.44
TPM1-229ENST00000561242 H3BQV1 296 aa12.28□□□□□ -0.44
TPM1-229ENST00000561242 NFIBO00712 420 aa12.28□□□□□ -0.44
TPM1-229ENST00000561242 PRKAR2AP13861 404 aaKnown RBP12.28□□□□□ -0.44
TPM1-229ENST00000561242 CDC27P30260 824 aa12.28□□□□□ -0.44
TPM1-229ENST00000561242 EVCP57679 992 aa12.28□□□□□ -0.44
TPM1-229ENST00000561242 PFKFB3Q16875 520 aaPredicted RBP12.28□□□□□ -0.44
TPM1-229ENST00000561242 ZNF792Q3KQV3 632 aa12.28□□□□□ -0.44
TPM1-229ENST00000561242 IFFO2Q5TF58 517 aa12.28□□□□□ -0.44
TPM1-229ENST00000561242 CCDC83Q8IWF9 413 aa12.28□□□□□ -0.44
TPM1-229ENST00000561242 FAM177A1Q8N128 213 aaPredicted RBP12.28□□□□□ -0.44
TPM1-229ENST00000561242 VTI1AQ96AJ9 217 aa12.28□□□□□ -0.44
TPM1-229ENST00000561242 SH3GLB2Q9NR46 395 aa12.28□□□□□ -0.44
TPM1-229ENST00000561242 BARHL2Q9NY43 387 aa12.28□□□□□ -0.44
TPM1-229ENST00000561242 SMC3Q9UQE7 1217 aa12.28□□□□□ -0.44
TPM1-229ENST00000561242 ZNF536O15090 1300 aa12.28□□□□□ -0.44
TPM1-229ENST00000561242 SYNGAP1Q96PV0 1343 aa12.28□□□□□ -0.44
TPM1-229ENST00000561242 THSD7BQ9C0I4 1608 aa12.27□□□□□ -0.44
TPM1-229ENST00000561242 COBLO75128 1261 aa12.27□□□□□ -0.45
TPM1-229ENST00000561242 CAPN15O75808 1086 aa12.27□□□□□ -0.45
TPM1-229ENST00000561242 STAM2O75886 525 aa12.27□□□□□ -0.45
TPM1-229ENST00000561242 CCL5P13501 91 aa12.27□□□□□ -0.45
TPM1-229ENST00000561242 AKR1A1P14550 325 aa12.27□□□□□ -0.45
TPM1-229ENST00000561242 HOXA13P31271 388 aaPredicted RBP12.27□□□□□ -0.45
TPM1-229ENST00000561242 CYP2C19P33261 490 aa12.27□□□□□ -0.45
TPM1-229ENST00000561242 SCRN1Q12765 414 aa12.27□□□□□ -0.45
TPM1-229ENST00000561242 KCNV1Q6PIU1 500 aa12.27□□□□□ -0.45
TPM1-229ENST00000561242 NECAB1Q8N987 351 aa12.27□□□□□ -0.45
TPM1-229ENST00000561242 NPLOC4Q8TAT6 608 aa12.27□□□□□ -0.45
TPM1-229ENST00000561242 GPKOWQ92917 476 aaPredicted RBP eCLIP12.27□□□□□ -0.45
TPM1-229ENST00000561242 MTMR8Q96EF0 704 aa12.27□□□□□ -0.45
TPM1-229ENST00000561242 ALG1Q9BT22 464 aa12.27□□□□□ -0.45
TPM1-229ENST00000561242 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.27□□□□□ -0.45
TPM1-229ENST00000561242 MYH8P13535 1937 aa12.27□□□□□ -0.45
TPM1-229ENST00000561242 ATAD5Q96QE3 1844 aa12.26□□□□□ -0.45
TPM1-229ENST00000561242 CCDC194A0A1B0GVG4 234 aa12.26□□□□□ -0.45
TPM1-229ENST00000561242 KBTBD13C9JR72 458 aa12.26□□□□□ -0.45
TPM1-229ENST00000561242 CYTH3O43739 400 aa12.26□□□□□ -0.45
TPM1-229ENST00000561242 EIF2AK2P19525 551 aaKnown RBP12.26□□□□□ -0.45
TPM1-229ENST00000561242 ALDH5A1P51649 535 aaPredicted RBP12.26□□□□□ -0.45
TPM1-229ENST00000561242 CNTN2Q02246 1040 aa12.26□□□□□ -0.45
TPM1-229ENST00000561242 AP3B2Q13367 1082 aa12.26□□□□□ -0.45
TPM1-229ENST00000561242 ACVR2BQ13705 512 aa12.26□□□□□ -0.45
TPM1-229ENST00000561242 TTLL4Q14679 1199 aa12.26□□□□□ -0.45
TPM1-229ENST00000561242 ME3Q16798 604 aa12.26□□□□□ -0.45
TPM1-229ENST00000561242 IQSEC1Q6DN90 963 aa12.26□□□□□ -0.45
TPM1-229ENST00000561242 XRRA1Q6P2D8 792 aa12.26□□□□□ -0.45
TPM1-229ENST00000561242 ARMCX2Q7L311 632 aa12.26□□□□□ -0.45
TPM1-229ENST00000561242 EEPD1Q7L9B9 569 aa12.26□□□□□ -0.45
TPM1-229ENST00000561242 RNF180Q86T96 592 aa12.26□□□□□ -0.45
TPM1-229ENST00000561242 REXO1Q8N1G1 1221 aaKnown RBP12.26□□□□□ -0.45
TPM1-229ENST00000561242 SYTL5Q8TDW5 730 aaPredicted RBP12.26□□□□□ -0.45
TPM1-229ENST00000561242 CLEC4DQ8WXI8 215 aa12.26□□□□□ -0.45
TPM1-229ENST00000561242 GTF3C6Q969F1 213 aa12.26□□□□□ -0.45
TPM1-229ENST00000561242 ARMC5Q96C12 935 aa12.26□□□□□ -0.45
TPM1-229ENST00000561242 IL17RAQ96F46 866 aa12.26□□□□□ -0.45
TPM1-229ENST00000561242 CDHR1Q96JP9 859 aa12.26□□□□□ -0.45
TPM1-229ENST00000561242 NAP1L4Q99733 375 aaKnown RBP12.26□□□□□ -0.45
TPM1-229ENST00000561242 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.26□□□□□ -0.45
TPM1-229ENST00000561242 VTA1Q9NP79 307 aa12.26□□□□□ -0.45
TPM1-229ENST00000561242 RIC8AQ9NPQ8 531 aa12.26□□□□□ -0.45
TPM1-229ENST00000561242 PPFIA3O75145 1194 aa12.25□□□□□ -0.45
TPM1-229ENST00000561242 EIF3JO75822 258 aaKnown RBP12.25□□□□□ -0.45
TPM1-229ENST00000561242 PDCP20941 246 aa12.25□□□□□ -0.45
TPM1-229ENST00000561242 CTGFP29279 349 aa12.25□□□□□ -0.45
TPM1-229ENST00000561242 TNFAIP2Q03169 654 aa12.25□□□□□ -0.45
TPM1-229ENST00000561242 CACNB2Q08289 660 aaPredicted RBP12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms