RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-208	ENST00000536710	AHI1	Q8N157	1196 aa		7.51	□□□□□ -1.21
PRKDC-208	ENST00000536710	SYTL4	Q96C24	671 aa	Predicted RBP	7.51	□□□□□ -1.21
PRKDC-208	ENST00000536710	PTCHD1	Q96NR3	888 aa		7.51	□□□□□ -1.21
PRKDC-208	ENST00000536710	GPR27	Q9NS67	375 aa		7.51	□□□□□ -1.21
PRKDC-208	ENST00000536710	ATP8A1	Q9Y2Q0	1164 aa		7.51	□□□□□ -1.21
PRKDC-208	ENST00000536710	PITPNM2	Q9BZ72	1349 aa		7.51	□□□□□ -1.21
PRKDC-208	ENST00000536710	TRBV23OR9-2	A0A075B6M9	112 aa		7.5	□□□□□ -1.21
PRKDC-208	ENST00000536710	TCRBV16S1A1N1	A0A5B0	115 aa		7.5	□□□□□ -1.21
PRKDC-208	ENST00000536710	FGF10	O15520	208 aa	Predicted RBP	7.5	□□□□□ -1.21
PRKDC-208	ENST00000536710	TBC1D8	O95759	1140 aa		7.5	□□□□□ -1.21
PRKDC-208	ENST00000536710	LCP1	P13796	627 aa		7.5	□□□□□ -1.21
PRKDC-208	ENST00000536710	GPR85	P60893	370 aa		7.5	□□□□□ -1.21
PRKDC-208	ENST00000536710	AOC3	Q16853	763 aa		7.5	□□□□□ -1.21
PRKDC-208	ENST00000536710	RSPO4	Q2I0M5	234 aa	Predicted RBP	7.5	□□□□□ -1.21
PRKDC-208	ENST00000536710	CFAP100	Q494V2	611 aa		7.5	□□□□□ -1.21
PRKDC-208	ENST00000536710	WWC2	Q6AWC2	1192 aa		7.5	□□□□□ -1.21
PRKDC-208	ENST00000536710	RSPO2	Q6UXX9	243 aa	Predicted RBP	7.5	□□□□□ -1.21
PRKDC-208	ENST00000536710	UBE2R2	Q712K3	238 aa	Predicted RBP	7.5	□□□□□ -1.21
PRKDC-208	ENST00000536710	DDX46	Q7L014	1031 aa	Known RBP	7.5	□□□□□ -1.21
PRKDC-208	ENST00000536710	CPNE8	Q86YQ8	564 aa		7.5	□□□□□ -1.21
PRKDC-208	ENST00000536710	JAML	Q86YT9	394 aa		7.5	□□□□□ -1.21
PRKDC-208	ENST00000536710	CCDC103	Q8IW40	242 aa		7.5	□□□□□ -1.21
PRKDC-208	ENST00000536710	ZC3H7A	Q8IWR0	971 aa	Known RBP	7.5	□□□□□ -1.21
PRKDC-208	ENST00000536710	ATL2	Q8NHH9	583 aa		7.5	□□□□□ -1.21
PRKDC-208	ENST00000536710	ASB11	Q8WXH4	323 aa		7.5	□□□□□ -1.21
PRKDC-208	ENST00000536710	CHAMP1	Q96JM3	812 aa		7.5	□□□□□ -1.21
PRKDC-208	ENST00000536710	ZFYVE21	Q9BQ24	234 aa		7.5	□□□□□ -1.21
PRKDC-208	ENST00000536710	ALG1	Q9BT22	464 aa		7.5	□□□□□ -1.21
PRKDC-208	ENST00000536710	FAM126A	Q9BYI3	521 aa	Predicted RBP	7.5	□□□□□ -1.21
PRKDC-208	ENST00000536710		B4E1Z4	1266 aa		7.49	□□□□□ -1.21
PRKDC-208	ENST00000536710	MYO1B	O43795	1136 aa		7.49	□□□□□ -1.21
PRKDC-208	ENST00000536710	MSC	O60682	206 aa		7.49	□□□□□ -1.21
PRKDC-208	ENST00000536710	NKAPL	Q5M9Q1	402 aa		7.49	□□□□□ -1.21
PRKDC-208	ENST00000536710	RPUSD2	Q8IZ73	545 aa	Known RBP	7.49	□□□□□ -1.21
PRKDC-208	ENST00000536710	MCM8	Q9UJA3	840 aa		7.49	□□□□□ -1.21
PRKDC-208	ENST00000536710	PCDHA2	Q9Y5H9	948 aa		7.49	□□□□□ -1.21
PRKDC-208	ENST00000536710	PRR19	A6NJB7	356 aa		7.48	□□□□□ -1.21
PRKDC-208	ENST00000536710	ARNTL	O00327	626 aa		7.48	□□□□□ -1.21
PRKDC-208	ENST00000536710	MSTN	O14793	375 aa		7.48	□□□□□ -1.21
PRKDC-208	ENST00000536710	DYRK3	O43781	588 aa		7.48	□□□□□ -1.21
PRKDC-208	ENST00000536710	ESR1	P03372	595 aa		7.48	□□□□□ -1.21
PRKDC-208	ENST00000536710	SRGAP2C	P0DJJ0	459 aa		7.48	□□□□□ -1.21
PRKDC-208	ENST00000536710	CPE	P16870	476 aa		7.48	□□□□□ -1.21
PRKDC-208	ENST00000536710	HOXA10	P31260	410 aa	Predicted RBP	7.48	□□□□□ -1.21
PRKDC-208	ENST00000536710	EVA1C	P58658	441 aa		7.48	□□□□□ -1.21
PRKDC-208	ENST00000536710	TEK	Q02763	1124 aa		7.48	□□□□□ -1.21
PRKDC-208	ENST00000536710	STRN3	Q13033	797 aa		7.48	□□□□□ -1.21
PRKDC-208	ENST00000536710	IKZF1	Q13422	519 aa		7.48	□□□□□ -1.21
PRKDC-208	ENST00000536710	PCBP1	Q15365	356 aa	Known RBP eCLIP	7.48	□□□□□ -1.21
PRKDC-208	ENST00000536710	PIK3R6	Q5UE93	754 aa		7.48	□□□□□ -1.21
PRKDC-208	ENST00000536710	PKN3	Q6P5Z2	889 aa		7.48	□□□□□ -1.21
PRKDC-208	ENST00000536710	SLC51A	Q86UW1	340 aa		7.48	□□□□□ -1.21
PRKDC-208	ENST00000536710	DDX42	Q86XP3	938 aa	Known RBP eCLIP	7.48	□□□□□ -1.21
PRKDC-208	ENST00000536710	PRPF38A	Q8NAV1	312 aa	Known RBP	7.48	□□□□□ -1.21
PRKDC-208	ENST00000536710	RCBTB1	Q8NDN9	531 aa		7.48	□□□□□ -1.21
PRKDC-208	ENST00000536710	PUM2	Q8TB72	1066 aa	Known RBP eCLIP	7.48	□□□□□ -1.21	3e-20	■■■■□ 20.5
PRKDC-208	ENST00000536710	SPOCK3	Q9BQ16	436 aa		7.48	□□□□□ -1.21
PRKDC-208	ENST00000536710	BTG4	Q9NY30	223 aa		7.48	□□□□□ -1.21
PRKDC-208	ENST00000536710	DDX56	Q9NY93	547 aa	Known RBP	7.48	□□□□□ -1.21
PRKDC-208	ENST00000536710	NPFFR2	Q9Y5X5	522 aa		7.48	□□□□□ -1.21
PRKDC-208	ENST00000536710	TMEM82	A0PJX8	343 aa		7.47	□□□□□ -1.21
PRKDC-208	ENST00000536710	TGFB1	P01137	390 aa		7.47	□□□□□ -1.21
PRKDC-208	ENST00000536710	CDKN1C	P49918	316 aa	Predicted RBP	7.47	□□□□□ -1.21
PRKDC-208	ENST00000536710	INF2	Q27J81	1249 aa		7.47	□□□□□ -1.21
PRKDC-208	ENST00000536710	CDCA2	Q69YH5	1023 aa	Predicted RBP	7.47	□□□□□ -1.21
PRKDC-208	ENST00000536710	ZCCHC8	Q6NZY4	707 aa	Known RBP	7.47	□□□□□ -1.21
PRKDC-208	ENST00000536710	CYP2R1	Q6VVX0	501 aa		7.47	□□□□□ -1.21
PRKDC-208	ENST00000536710	LBX2	Q6XYB7	198 aa		7.47	□□□□□ -1.21
PRKDC-208	ENST00000536710	DDX53	Q86TM3	631 aa	Known RBP	7.47	□□□□□ -1.21
PRKDC-208	ENST00000536710	WNK4	Q96J92	1243 aa		7.47	□□□□□ -1.21
PRKDC-208	ENST00000536710	MMP19	Q99542	508 aa		7.47	□□□□□ -1.21
PRKDC-208	ENST00000536710	HOMER2	Q9NSB8	354 aa		7.47	□□□□□ -1.21
PRKDC-208	ENST00000536710	SAMD15	Q9P1V8	674 aa		7.47	□□□□□ -1.21
PRKDC-208	ENST00000536710	PROC	P04070	461 aa		7.46	□□□□□ -1.22
PRKDC-208	ENST00000536710	PRKCQ	Q04759	706 aa		7.46	□□□□□ -1.22
PRKDC-208	ENST00000536710	PAK1	Q13153	545 aa		7.46	□□□□□ -1.22
PRKDC-208	ENST00000536710	FAM50A	Q14320	339 aa	Known RBP	7.46	□□□□□ -1.22
PRKDC-208	ENST00000536710	TESK1	Q15569	626 aa		7.46	□□□□□ -1.22
PRKDC-208	ENST00000536710	KIZ	Q2M2Z5	673 aa		7.46	□□□□□ -1.22
PRKDC-208	ENST00000536710	MBLAC2	Q68D91	279 aa		7.46	□□□□□ -1.22
PRKDC-208	ENST00000536710	STRA8	Q7Z7C7	330 aa		7.46	□□□□□ -1.22
PRKDC-208	ENST00000536710	FERMT3	Q86UX7	667 aa		7.46	□□□□□ -1.22
PRKDC-208	ENST00000536710	FCRL2	Q96LA5	508 aa	Predicted RBP	7.46	□□□□□ -1.22
PRKDC-208	ENST00000536710	ERVK13-1	Q9NX77	482 aa		7.46	□□□□□ -1.22
PRKDC-208	ENST00000536710	VAV3	Q9UKW4	847 aa		7.46	□□□□□ -1.22
PRKDC-208	ENST00000536710	FAM83G	A6ND36	823 aa		7.45	□□□□□ -1.22
PRKDC-208	ENST00000536710	ARVCF	O00192	962 aa		7.45	□□□□□ -1.22
PRKDC-208	ENST00000536710	POU3F2	P20265	443 aa	Predicted RBP	7.45	□□□□□ -1.22
PRKDC-208	ENST00000536710	GRIK1	P39086	918 aa		7.45	□□□□□ -1.22
PRKDC-208	ENST00000536710	CD96	P40200	585 aa		7.45	□□□□□ -1.22
PRKDC-208	ENST00000536710	BNIP3	Q12983	259 aa		7.45	□□□□□ -1.22
PRKDC-208	ENST00000536710	AFAP1L2	Q8N4X5	818 aa		7.45	□□□□□ -1.22
PRKDC-208	ENST00000536710	IGSF22	Q8N9C0	903 aa		7.45	□□□□□ -1.22
PRKDC-208	ENST00000536710	MTFR1L	Q9H019	292 aa		7.45	□□□□□ -1.22
PRKDC-208	ENST00000536710	CARS2	Q9HA77	564 aa	Known RBP	7.45	□□□□□ -1.22
PRKDC-208	ENST00000536710	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	7.45	□□□□□ -1.22
PRKDC-208	ENST00000536710	COQ6	Q9Y2Z9	468 aa		7.45	□□□□□ -1.22
PRKDC-208	ENST00000536710	TIMM13	Q9Y5L4	95 aa	Predicted RBP	7.45	□□□□□ -1.22
PRKDC-208	ENST00000536710	NPHS1	O60500	1241 aa		7.44	□□□□□ -1.22
PRKDC-208	ENST00000536710	NPTXR	O95502	500 aa		7.44	□□□□□ -1.22

Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms