RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 ARFGAP3Q9NP61 516 aa14.72□□□□□ -0.05
LDLR-203ENST00000535915 MTMR4Q9NYA4 1195 aa14.72□□□□□ -0.05
LDLR-203ENST00000535915 MYO1AQ9UBC5 1043 aa14.72□□□□□ -0.05
LDLR-203ENST00000535915 MYH4Q9Y623 1939 aa14.72□□□□□ -0.05
LDLR-203ENST00000535915 ORC2Q13416 577 aaPredicted RBP14.72□□□□□ -0.05
LDLR-203ENST00000535915 CALCRLQ16602 461 aa14.72□□□□□ -0.05
LDLR-203ENST00000535915 CNOT6LQ96LI5 555 aaKnown RBP14.72□□□□□ -0.05
LDLR-203ENST00000535915 hCG_1984214I3L0E3 225 aa14.71□□□□□ -0.05
LDLR-203ENST00000535915 SRGNP10124 158 aa14.71□□□□□ -0.05
LDLR-203ENST00000535915 TRIM21P19474 475 aaKnown RBP14.71□□□□□ -0.05
LDLR-203ENST00000535915 MTIF2P46199 727 aaKnown RBP14.71□□□□□ -0.05
LDLR-203ENST00000535915 ADCY7P51828 1080 aa14.71□□□□□ -0.05
LDLR-203ENST00000535915 ASPRV1Q53RT3 343 aa14.71□□□□□ -0.05
LDLR-203ENST00000535915 FAM114A1Q8IWE2 563 aa14.71□□□□□ -0.05
LDLR-203ENST00000535915 ZNF713Q8N859 430 aaPredicted RBP14.71□□□□□ -0.05
LDLR-203ENST00000535915 GPCPD1Q9NPB8 672 aa14.71□□□□□ -0.05
LDLR-203ENST00000535915 LRWD1Q9UFC0 647 aa14.71□□□□□ -0.05
LDLR-203ENST00000535915 ATP8B1O43520 1251 aa14.71□□□□□ -0.06
LDLR-203ENST00000535915 AKR1B1P15121 316 aa14.71□□□□□ -0.06
LDLR-203ENST00000535915 PPP1R2P41236 205 aa14.71□□□□□ -0.06
LDLR-203ENST00000535915 TBC1D8BQ0IIM8 1120 aa14.71□□□□□ -0.06
LDLR-203ENST00000535915 CNNM4Q6P4Q7 775 aa14.71□□□□□ -0.06
LDLR-203ENST00000535915 DPP8Q6V1X1 898 aaPredicted RBP14.71□□□□□ -0.06
LDLR-203ENST00000535915 SV2BQ7L1I2 683 aa14.71□□□□□ -0.06
LDLR-203ENST00000535915 CLEC10AQ8IUN9 316 aa14.71□□□□□ -0.06
LDLR-203ENST00000535915 HPS3Q969F9 1004 aa14.71□□□□□ -0.06
LDLR-203ENST00000535915 PCMTD1Q96MG8 357 aaPredicted RBP14.71□□□□□ -0.06
LDLR-203ENST00000535915 GUCA1BQ9UMX6 200 aa14.71□□□□□ -0.06
LDLR-203ENST00000535915 LTBP1Q14766 1721 aa14.7□□□□□ -0.06
LDLR-203ENST00000535915 MYH7BA7E2Y1 1941 aa14.7□□□□□ -0.06
LDLR-203ENST00000535915 PLIN4Q96Q06 1357 aa14.7□□□□□ -0.06
LDLR-203ENST00000535915 TBC1D8O95759 1140 aa14.7□□□□□ -0.06
LDLR-203ENST00000535915 HOXA10P31260 410 aaPredicted RBP14.7□□□□□ -0.06
LDLR-203ENST00000535915 TMEM266Q2M3C6 531 aa14.7□□□□□ -0.06
LDLR-203ENST00000535915 CDK5RAP3Q96JB5 506 aa14.7□□□□□ -0.06
LDLR-203ENST00000535915 CRAMP1Q96RY5 1269 aa14.7□□□□□ -0.06
LDLR-203ENST00000535915 REXO2Q9Y3B8 237 aaKnown RBP14.7□□□□□ -0.06
LDLR-203ENST00000535915 LRRC37AA6NMS7 1700 aa14.7□□□□□ -0.06
LDLR-203ENST00000535915 WDR59Q6PJI9 974 aa14.7□□□□□ -0.06
LDLR-203ENST00000535915 PLCD3Q8N3E9 789 aa14.7□□□□□ -0.06
LDLR-203ENST00000535915 MTMR9Q96QG7 549 aa14.7□□□□□ -0.06
LDLR-203ENST00000535915 NOC4LQ9BVI4 516 aaKnown RBP14.7□□□□□ -0.06
LDLR-203ENST00000535915 SLC39A2Q9NP94 309 aa14.7□□□□□ -0.06
LDLR-203ENST00000535915 TRIM10Q9UDY6 481 aa14.7□□□□□ -0.06
LDLR-203ENST00000535915 SLC37A4O43826 429 aa14.69□□□□□ -0.06
LDLR-203ENST00000535915 SASH3O75995 380 aa14.69□□□□□ -0.06
LDLR-203ENST00000535915 TDP2O95551 362 aa14.69□□□□□ -0.06
LDLR-203ENST00000535915 TFRCP02786 760 aaKnown RBP14.69□□□□□ -0.06
LDLR-203ENST00000535915 DDR1Q08345 913 aa14.69□□□□□ -0.06
LDLR-203ENST00000535915 GRB10Q13322 594 aa14.69□□□□□ -0.06
LDLR-203ENST00000535915 MEX3CQ5U5Q3 659 aaKnown RBP14.69□□□□□ -0.06
LDLR-203ENST00000535915 KIAA0895Q8NCT3 520 aa14.69□□□□□ -0.06
LDLR-203ENST00000535915 NUP58Q9BVL2 599 aa14.69□□□□□ -0.06
LDLR-203ENST00000535915 AGPAT5Q9NUQ2 364 aa14.69□□□□□ -0.06
LDLR-203ENST00000535915 PPEF1O14829 653 aaPredicted RBP14.69□□□□□ -0.06
LDLR-203ENST00000535915 KLK7P49862 253 aa14.69□□□□□ -0.06
LDLR-203ENST00000535915 GABPAQ06546 454 aa14.69□□□□□ -0.06
LDLR-203ENST00000535915 MCM6Q14566 821 aa14.69□□□□□ -0.06
LDLR-203ENST00000535915 RAB34Q9BZG1 259 aa14.69□□□□□ -0.06
LDLR-203ENST00000535915 ZNHIT6Q9NWK9 470 aaKnown RBP14.69□□□□□ -0.06
LDLR-203ENST00000535915 SPATA31A6Q5VVP1 1343 aa14.69□□□□□ -0.06
LDLR-203ENST00000535915 CCDC151A5D8V7 595 aa14.68□□□□□ -0.06
LDLR-203ENST00000535915 TTLL1O95922 423 aa14.68□□□□□ -0.06
LDLR-203ENST00000535915 TNNI2P48788 182 aa14.68□□□□□ -0.06
LDLR-203ENST00000535915 FXR2P51116 673 aaKnown RBP eCLIP14.68□□□□□ -0.061e-6■□□□□ 10.3
LDLR-203ENST00000535915 DYMQ7RTS9 669 aa14.68□□□□□ -0.06
LDLR-203ENST00000535915 SEPT12Q8IYM1 358 aa14.68□□□□□ -0.06
LDLR-203ENST00000535915 LARP4BQ92615 738 aaKnown RBP14.68□□□□□ -0.06
LDLR-203ENST00000535915 HAUS4Q9H6D7 363 aa14.68□□□□□ -0.06
LDLR-203ENST00000535915 ANKZF1Q9H8Y5 726 aa14.68□□□□□ -0.06
LDLR-203ENST00000535915 DDX4Q9NQI0 724 aaKnown RBP14.68□□□□□ -0.06
LDLR-203ENST00000535915 STK17AQ9UEE5 414 aa14.68□□□□□ -0.06
LDLR-203ENST00000535915 POTEMA6NI47 508 aa14.68□□□□□ -0.06
LDLR-203ENST00000535915 SNHG28P0DPA3 235 aa14.68□□□□□ -0.06
LDLR-203ENST00000535915 BRD3Q15059 726 aa14.68□□□□□ -0.06
LDLR-203ENST00000535915 WHAMMP3Q1A5X7 153 aa14.68□□□□□ -0.06
LDLR-203ENST00000535915 RETREG2Q8NC44 543 aa14.68□□□□□ -0.06
LDLR-203ENST00000535915 PNMA5Q96PV4 448 aa14.68□□□□□ -0.06
LDLR-203ENST00000535915 TTYH3Q9C0H2 523 aa14.68□□□□□ -0.06
LDLR-203ENST00000535915 BLOC1S4Q9NUP1 217 aa14.68□□□□□ -0.06
LDLR-203ENST00000535915 SERPINB13Q9UIV8 391 aa14.68□□□□□ -0.06
LDLR-203ENST00000535915 MYO6Q9UM54 1294 aa14.68□□□□□ -0.06
LDLR-203ENST00000535915 ADAMTSL1Q8N6G6 1762 aa14.68□□□□□ -0.06
LDLR-203ENST00000535915 CTAGE15A4D2H0 777 aa14.68□□□□□ -0.06
LDLR-203ENST00000535915 MYMKA6NI61 221 aa14.68□□□□□ -0.06
LDLR-203ENST00000535915 POLRMTO00411 1230 aaKnown RBP14.68□□□□□ -0.06
LDLR-203ENST00000535915 CTAGE8P0CG41 777 aa14.68□□□□□ -0.06
LDLR-203ENST00000535915 HERVK_113P62684 666 aa14.68□□□□□ -0.06
LDLR-203ENST00000535915 KRT83P78385 493 aa14.68□□□□□ -0.06
LDLR-203ENST00000535915 CCDC122Q5T0U0 273 aa14.68□□□□□ -0.06
LDLR-203ENST00000535915 KIAA1328Q86T90 577 aa14.68□□□□□ -0.06
LDLR-203ENST00000535915 CTAGE6Q86UF2 777 aa14.68□□□□□ -0.06
LDLR-203ENST00000535915 CTAGE4Q8IX94 777 aa14.68□□□□□ -0.06
LDLR-203ENST00000535915 SP8Q8IXZ3 490 aa14.68□□□□□ -0.06
LDLR-203ENST00000535915 ADGRF4Q8IZF3 695 aa14.68□□□□□ -0.06
LDLR-203ENST00000535915 COA1Q9GZY4 146 aa14.68□□□□□ -0.06
LDLR-203ENST00000535915 SEMA6BQ9H3T3 888 aa14.68□□□□□ -0.06
LDLR-203ENST00000535915 TFR2Q9UP52 801 aa14.68□□□□□ -0.06
LDLR-203ENST00000535915 IGKV6D-41A0A0C4DH26 115 aa14.67□□□□□ -0.06
LDLR-203ENST00000535915 POTEB2H3BUK9 544 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms