RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 UIMC1Q96RL1 719 aa10.32□□□□□ -0.76
LIMCH1-215ENST00000512632 SELENOOQ9BVL4 669 aa10.32□□□□□ -0.76
LIMCH1-215ENST00000512632 UBA5Q9GZZ9 404 aa10.32□□□□□ -0.76
LIMCH1-215ENST00000512632 SMCO2A6NFE2 343 aa10.31□□□□□ -0.76
LIMCH1-215ENST00000512632 OR52Z1P0C646 297 aa10.31□□□□□ -0.76
LIMCH1-215ENST00000512632 GNAQP50148 359 aa10.31□□□□□ -0.76
LIMCH1-215ENST00000512632 GRM4Q14833 912 aa10.31□□□□□ -0.76
LIMCH1-215ENST00000512632 MIIPQ5JXC2 388 aa10.31□□□□□ -0.76
LIMCH1-215ENST00000512632 SND1Q7KZF4 910 aaKnown RBP eCLIP10.31□□□□□ -0.76
LIMCH1-215ENST00000512632 EHBP1Q8NDI1 1231 aa10.31□□□□□ -0.76
LIMCH1-215ENST00000512632 GPR101Q96P66 508 aaPredicted RBP10.31□□□□□ -0.76
LIMCH1-215ENST00000512632 NUP58Q9BVL2 599 aa10.31□□□□□ -0.76
LIMCH1-215ENST00000512632 BARHL2Q9NY43 387 aa10.31□□□□□ -0.76
LIMCH1-215ENST00000512632 BIN2Q9UBW5 565 aaPredicted RBP10.31□□□□□ -0.76
LIMCH1-215ENST00000512632 MSL3Q8N5Y2 521 aaKnown RBP10.31□□□□□ -0.76
LIMCH1-215ENST00000512632 LRRC1Q9BTT6 524 aa10.31□□□□□ -0.76
LIMCH1-215ENST00000512632 IFIH1Q9BYX4 1025 aaKnown RBP10.31□□□□□ -0.76
LIMCH1-215ENST00000512632 SEMA6BQ9H3T3 888 aa10.31□□□□□ -0.76
LIMCH1-215ENST00000512632 SRP68Q9UHB9 627 aaKnown RBP10.31□□□□□ -0.76
LIMCH1-215ENST00000512632 LRP5O75197 1615 aa10.31□□□□□ -0.76
LIMCH1-215ENST00000512632 CICQ96RK0 1608 aaPredicted RBP10.31□□□□□ -0.76
LIMCH1-215ENST00000512632 BICDL2A1A5D9 508 aa10.31□□□□□ -0.76
LIMCH1-215ENST00000512632 ZPR1O75312 459 aa10.31□□□□□ -0.76
LIMCH1-215ENST00000512632 LRRC41Q15345 812 aa10.31□□□□□ -0.76
LIMCH1-215ENST00000512632 CCDC155Q8N6L0 562 aa10.31□□□□□ -0.76
LIMCH1-215ENST00000512632 ARHGAP20Q9P2F6 1191 aa10.31□□□□□ -0.76
LIMCH1-215ENST00000512632 NCK2O43639 380 aa10.31□□□□□ -0.76
LIMCH1-215ENST00000512632 EIF4A3P38919 411 aaKnown RBP10.31□□□□□ -0.76
LIMCH1-215ENST00000512632 VAV2P52735 878 aa10.31□□□□□ -0.76
LIMCH1-215ENST00000512632 NAP1L1P55209 391 aaKnown RBP10.31□□□□□ -0.76
LIMCH1-215ENST00000512632 DNAJC21Q5F1R6 531 aaKnown RBP10.31□□□□□ -0.76
LIMCH1-215ENST00000512632 RRAGAQ7L523 313 aa10.31□□□□□ -0.76
LIMCH1-215ENST00000512632 CCDC170Q8IYT3 715 aa10.31□□□□□ -0.76
LIMCH1-215ENST00000512632 KIAA0895Q8NCT3 520 aa10.31□□□□□ -0.76
LIMCH1-215ENST00000512632 SH3GLB2Q9NR46 395 aa10.31□□□□□ -0.76
LIMCH1-215ENST00000512632 NONOQ15233 471 aaKnown RBP eCLIP10.3□□□□□ -0.76
LIMCH1-215ENST00000512632 NFRKBQ6P4R8 1299 aa10.3□□□□□ -0.76
LIMCH1-215ENST00000512632 TBCKQ8TEA7 893 aa10.3□□□□□ -0.76
LIMCH1-215ENST00000512632 NOC3LQ8WTT2 800 aaKnown RBP10.3□□□□□ -0.76
LIMCH1-215ENST00000512632 TSPYL1Q9H0U9 437 aa10.3□□□□□ -0.76
LIMCH1-215ENST00000512632 TMEM260Q9NX78 707 aa10.3□□□□□ -0.76
LIMCH1-215ENST00000512632 DOCK2Q92608 1830 aa10.3□□□□□ -0.76
LIMCH1-215ENST00000512632 USO1O60763 962 aaKnown RBP10.3□□□□□ -0.76
LIMCH1-215ENST00000512632 PRPF6O94906 941 aaKnown RBP10.3□□□□□ -0.76
LIMCH1-215ENST00000512632 TTC19Q6DKK2 380 aaPredicted RBP10.3□□□□□ -0.76
LIMCH1-215ENST00000512632 EHD4Q9H223 541 aa10.3□□□□□ -0.76
LIMCH1-215ENST00000512632 FLT1P17948 1338 aa10.3□□□□□ -0.76
LIMCH1-215ENST00000512632 BCORQ6W2J9 1755 aa10.3□□□□□ -0.76
LIMCH1-215ENST00000512632 ITGB4P16144 1822 aa10.3□□□□□ -0.76
LIMCH1-215ENST00000512632 AGPSO00116 658 aa10.3□□□□□ -0.76
LIMCH1-215ENST00000512632 TACC1O75410 805 aa10.3□□□□□ -0.76
LIMCH1-215ENST00000512632 LDHBP07195 334 aaKnown RBP10.3□□□□□ -0.76
LIMCH1-215ENST00000512632 MCM3P25205 808 aa10.3□□□□□ -0.76
LIMCH1-215ENST00000512632 ENOX2Q16206 610 aaKnown RBP10.3□□□□□ -0.76
LIMCH1-215ENST00000512632 NBPF5PQ86XG9 351 aaPredicted RBP10.3□□□□□ -0.76
LIMCH1-215ENST00000512632 TANGO6Q9C0B7 1094 aa10.3□□□□□ -0.76
LIMCH1-215ENST00000512632 PCDHA13Q9Y5I0 950 aa10.3□□□□□ -0.76
LIMCH1-215ENST00000512632 TAF1P21675 1872 aa10.3□□□□□ -0.76
LIMCH1-215ENST00000512632 MAGEA1P43355 309 aa10.3□□□□□ -0.76
LIMCH1-215ENST00000512632 SOGA3Q5TF21 947 aa10.3□□□□□ -0.76
LIMCH1-215ENST00000512632 POTEDQ86YR6 584 aa10.3□□□□□ -0.76
LIMCH1-215ENST00000512632 CREG2Q8IUH2 290 aa10.3□□□□□ -0.76
LIMCH1-215ENST00000512632 FAM114A1Q8IWE2 563 aa10.3□□□□□ -0.76
LIMCH1-215ENST00000512632 RETREG2Q8NC44 543 aa10.3□□□□□ -0.76
LIMCH1-215ENST00000512632 GLIS3Q8NEA6 775 aa10.3□□□□□ -0.76
LIMCH1-215ENST00000512632 RRP36Q96EU6 259 aaKnown RBP10.3□□□□□ -0.76
LIMCH1-215ENST00000512632 MMTAG2Q9BU76 263 aaKnown RBP10.3□□□□□ -0.76
LIMCH1-215ENST00000512632 NLRC4Q9NPP4 1024 aa10.3□□□□□ -0.76
LIMCH1-215ENST00000512632 SNX12Q9UMY4 172 aa10.3□□□□□ -0.76
LIMCH1-215ENST00000512632 ZC3H4Q9UPT8 1303 aaKnown RBP10.3□□□□□ -0.76
LIMCH1-215ENST00000512632 GOLGA6BA6NDN3 693 aa10.29□□□□□ -0.76
LIMCH1-215ENST00000512632 BUB1O43683 1085 aa10.29□□□□□ -0.76
LIMCH1-215ENST00000512632 KIF11P52732 1056 aa10.29□□□□□ -0.76
LIMCH1-215ENST00000512632 NDST4Q9H3R1 872 aa10.29□□□□□ -0.76
LIMCH1-215ENST00000512632 VIPAS39Q9H9C1 493 aa10.29□□□□□ -0.76
LIMCH1-215ENST00000512632 KANSL2Q9H9L4 492 aa10.29□□□□□ -0.76
LIMCH1-215ENST00000512632 POLD4Q9HCU8 107 aa10.29□□□□□ -0.76
LIMCH1-215ENST00000512632 ANKIB1Q9P2G1 1089 aa10.29□□□□□ -0.76
LIMCH1-215ENST00000512632 PALM3A6NDB9 673 aaPredicted RBP10.29□□□□□ -0.76
LIMCH1-215ENST00000512632 MYMKA6NI61 221 aa10.29□□□□□ -0.76
LIMCH1-215ENST00000512632 CCDC70Q6NSX1 233 aa10.29□□□□□ -0.76
LIMCH1-215ENST00000512632 TMC4Q7Z404 712 aa10.29□□□□□ -0.76
LIMCH1-215ENST00000512632 NEK8Q86SG6 692 aa10.29□□□□□ -0.76
LIMCH1-215ENST00000512632 SPATA4Q8NEY3 305 aa10.29□□□□□ -0.76
LIMCH1-215ENST00000512632 CALML4Q96GE6 196 aa10.29□□□□□ -0.76
LIMCH1-215ENST00000512632 RPGRIP1Q96KN7 1286 aa10.29□□□□□ -0.76
LIMCH1-215ENST00000512632 PIGSQ96S52 555 aa10.29□□□□□ -0.76
LIMCH1-215ENST00000512632 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.29□□□□□ -0.76
LIMCH1-215ENST00000512632 MYL1P05976 194 aa10.29□□□□□ -0.76
LIMCH1-215ENST00000512632 AARSP49588 968 aaKnown RBP eCLIP10.29□□□□□ -0.76
LIMCH1-215ENST00000512632 CCDC181Q5TID7 509 aa10.29□□□□□ -0.76
LIMCH1-215ENST00000512632 CLEC4GQ6UXB4 293 aa10.29□□□□□ -0.76
LIMCH1-215ENST00000512632 LINC00116Q8NCU8 138 aa10.29□□□□□ -0.76
LIMCH1-215ENST00000512632 C7orf25Q9BPX7 421 aa10.29□□□□□ -0.76
LIMCH1-215ENST00000512632 SALL4Q9UJQ4 1053 aa10.29□□□□□ -0.76
LIMCH1-215ENST00000512632 PLAGL2Q9UPG8 496 aa10.29□□□□□ -0.76
LIMCH1-215ENST00000512632 JRKLQ9Y4A0 524 aa10.29□□□□□ -0.76
LIMCH1-215ENST00000512632 CACNA1SQ13698 1873 aa10.29□□□□□ -0.76
LIMCH1-215ENST00000512632 RNASE9P60153 205 aaKnown RBP10.29□□□□□ -0.76
LIMCH1-215ENST00000512632 AMPD3Q01432 767 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms