RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 SHDQ96IW2 340 aa5.75□□□□□ -1.49
VPS50-217ENST00000485140 CCDC140Q96MF4 163 aa5.75□□□□□ -1.49
VPS50-217ENST00000485140 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.75□□□□□ -1.49
VPS50-217ENST00000485140 BUB1BO60566 1050 aaPredicted RBP5.74□□□□□ -1.49
VPS50-217ENST00000485140 EFEMP2O95967 443 aa5.74□□□□□ -1.49
VPS50-217ENST00000485140 IFNGR1P15260 489 aa5.74□□□□□ -1.49
VPS50-217ENST00000485140 BMP7P18075 431 aa5.74□□□□□ -1.49
VPS50-217ENST00000485140 GTF2A2P52657 109 aa5.74□□□□□ -1.49
VPS50-217ENST00000485140 PPP2R5DQ14738 602 aa5.74□□□□□ -1.49
VPS50-217ENST00000485140 KRTAP5-3Q6L8H2 238 aa5.74□□□□□ -1.49
VPS50-217ENST00000485140 DCP2Q8IU60 420 aaKnown RBP5.74□□□□□ -1.49
VPS50-217ENST00000485140 IGDCC3Q8IVU1 814 aa5.74□□□□□ -1.49
VPS50-217ENST00000485140 CPA5Q8WXQ8 436 aa5.74□□□□□ -1.49
VPS50-217ENST00000485140 KCNC2Q96PR1 638 aa5.74□□□□□ -1.49
VPS50-217ENST00000485140 EPN3Q9H201 632 aa5.74□□□□□ -1.49
VPS50-217ENST00000485140 NGRNQ9NPE2 291 aaKnown RBP5.74□□□□□ -1.49
VPS50-217ENST00000485140 RTEL1Q9NZ71 1219 aa5.74□□□□□ -1.49
VPS50-217ENST00000485140 AKT3Q9Y243 479 aa5.74□□□□□ -1.49
VPS50-217ENST00000485140 ZC3H12DA2A288 527 aaKnown RBP5.73□□□□□ -1.49
VPS50-217ENST00000485140 F8W031 263 aaPredicted RBP5.73□□□□□ -1.49
VPS50-217ENST00000485140 EPHB3P54753 998 aa5.73□□□□□ -1.49
VPS50-217ENST00000485140 E4F1Q66K89 784 aaPredicted RBP5.73□□□□□ -1.49
VPS50-217ENST00000485140 KIAA1211LQ6NV74 962 aa5.73□□□□□ -1.49
VPS50-217ENST00000485140 BVESQ8NE79 360 aa5.73□□□□□ -1.49
VPS50-217ENST00000485140 ADCY4Q8NFM4 1077 aa5.73□□□□□ -1.49
VPS50-217ENST00000485140 RELTQ969Z4 430 aa5.73□□□□□ -1.49
VPS50-217ENST00000485140 BORCS6Q96GS4 357 aa5.73□□□□□ -1.49
VPS50-217ENST00000485140 MMP19Q99542 508 aa5.73□□□□□ -1.49
VPS50-217ENST00000485140 STXBP3O00186 592 aa5.72□□□□□ -1.49
VPS50-217ENST00000485140 PRRG2O14669 202 aa5.72□□□□□ -1.49
VPS50-217ENST00000485140 SSBP05455 408 aaKnown RBP eCLIP5.72□□□□□ -1.49
VPS50-217ENST00000485140 MSL3P1P0C860 447 aa5.72□□□□□ -1.49
VPS50-217ENST00000485140 GLI4P10075 376 aa5.72□□□□□ -1.49
VPS50-217ENST00000485140 SYN1P17600 705 aa5.72□□□□□ -1.49
VPS50-217ENST00000485140 HOXA5P20719 270 aa5.72□□□□□ -1.49
VPS50-217ENST00000485140 IGFBP6P24592 240 aaPredicted RBP5.72□□□□□ -1.49
VPS50-217ENST00000485140 CEBPAP49715 358 aaPredicted RBP5.72□□□□□ -1.49
VPS50-217ENST00000485140 NFIXQ14938 502 aa5.72□□□□□ -1.49
VPS50-217ENST00000485140 USP33Q8TEY7 942 aa5.72□□□□□ -1.49
VPS50-217ENST00000485140 TEPSINQ96N21 525 aa5.72□□□□□ -1.49
VPS50-217ENST00000485140 PWWP2AQ96N64 755 aa5.72□□□□□ -1.49
VPS50-217ENST00000485140 AP5M1Q9H0R1 490 aa5.72□□□□□ -1.49
VPS50-217ENST00000485140 CYP26B1Q9NR63 512 aa5.72□□□□□ -1.49
VPS50-217ENST00000485140 FAM86C1Q9NVL1 165 aa5.72□□□□□ -1.49
VPS50-217ENST00000485140 CNOT11Q9UKZ1 510 aaKnown RBP5.72□□□□□ -1.49
VPS50-217ENST00000485140 EMC9Q9Y3B6 208 aa5.72□□□□□ -1.49
VPS50-217ENST00000485140 NCANO14594 1321 aa5.72□□□□□ -1.49
VPS50-217ENST00000485140 B8ZZF3 427 aa5.71□□□□□ -1.5
VPS50-217ENST00000485140 AGRPO00253 132 aa5.71□□□□□ -1.5
VPS50-217ENST00000485140 MYO1BO43795 1136 aa5.71□□□□□ -1.5
VPS50-217ENST00000485140 CPP00450 1065 aa5.71□□□□□ -1.5
VPS50-217ENST00000485140 ATF4P18848 351 aaPredicted RBP5.71□□□□□ -1.5
VPS50-217ENST00000485140 SDHBP21912 280 aa5.71□□□□□ -1.5
VPS50-217ENST00000485140 ZNF200P98182 395 aaPredicted RBP5.71□□□□□ -1.5
VPS50-217ENST00000485140 CHRNA2Q15822 529 aa5.71□□□□□ -1.5
VPS50-217ENST00000485140 FRMD5Q7Z6J6 570 aa5.71□□□□□ -1.5
VPS50-217ENST00000485140 B3GNT8Q7Z7M8 397 aa5.71□□□□□ -1.5
VPS50-217ENST00000485140 CXorf38Q8TB03 319 aa5.71□□□□□ -1.5
VPS50-217ENST00000485140 KLHL6Q8WZ60 621 aa5.71□□□□□ -1.5
VPS50-217ENST00000485140 ALG3Q92685 438 aa5.71□□□□□ -1.5
VPS50-217ENST00000485140 ACTR10Q9NZ32 417 aa5.71□□□□□ -1.5
VPS50-217ENST00000485140 RBAK-RBAKDNI3L0D1 243 aa5.7□□□□□ -1.5
VPS50-217ENST00000485140 ERCC5P28715 1186 aaPredicted RBP5.7□□□□□ -1.5
VPS50-217ENST00000485140 HOXC12P31275 282 aa5.7□□□□□ -1.5
VPS50-217ENST00000485140 PRR5P85299 388 aa5.7□□□□□ -1.5
VPS50-217ENST00000485140 KCNAB2Q13303 367 aa5.7□□□□□ -1.5
VPS50-217ENST00000485140 FXNQ16595 210 aa5.7□□□□□ -1.5
VPS50-217ENST00000485140 LCE5AQ5TCM9 118 aa5.7□□□□□ -1.5
VPS50-217ENST00000485140 WWC2Q6AWC2 1192 aa5.7□□□□□ -1.5
VPS50-217ENST00000485140 TRIM59Q8IWR1 403 aa5.7□□□□□ -1.5
VPS50-217ENST00000485140 TMEFF1Q8IYR6 380 aa5.7□□□□□ -1.5
VPS50-217ENST00000485140 ANAPC16Q96DE5 110 aa5.7□□□□□ -1.5
VPS50-217ENST00000485140 FGD4Q96M96 766 aa5.7□□□□□ -1.5
VPS50-217ENST00000485140 KIAA1522Q9P206 1035 aaPredicted RBP5.7□□□□□ -1.5
VPS50-217ENST00000485140 R3HCC1Q9Y3T6 440 aaKnown RBP5.7□□□□□ -1.5
VPS50-217ENST00000485140 PMF1-BGLAPU3KQ54 211 aa5.7□□□□□ -1.5
VPS50-217ENST00000485140 TRIM13O60858 407 aa5.69□□□□□ -1.5
VPS50-217ENST00000485140 SLC6A11P48066 632 aa5.69□□□□□ -1.5
VPS50-217ENST00000485140 KCNC1P48547 511 aa5.69□□□□□ -1.5
VPS50-217ENST00000485140 DPY19L1Q2PZI1 675 aa5.69□□□□□ -1.5
VPS50-217ENST00000485140 MROH9Q5TGP6 573 aa5.69□□□□□ -1.5
VPS50-217ENST00000485140 ZC3H18Q86VM9 953 aaKnown RBP5.69□□□□□ -1.5
VPS50-217ENST00000485140 COPS5Q92905 334 aa5.69□□□□□ -1.5
VPS50-217ENST00000485140 NKX2-4Q9H2Z4 354 aa5.69□□□□□ -1.5
VPS50-217ENST00000485140 PRKAG3Q9UGI9 489 aa5.69□□□□□ -1.5
VPS50-217ENST00000485140 PCDHB10Q9UN67 800 aa5.69□□□□□ -1.5
VPS50-217ENST00000485140 KCNH1O95259 989 aa5.68□□□□□ -1.5
VPS50-217ENST00000485140 TCF3P15923 654 aa5.68□□□□□ -1.5
VPS50-217ENST00000485140 FBLN1P23142 703 aa5.68□□□□□ -1.5
VPS50-217ENST00000485140 FOXO4P98177 505 aa5.68□□□□□ -1.5
VPS50-217ENST00000485140 KIR3DS1Q14943 382 aa5.68□□□□□ -1.5
VPS50-217ENST00000485140 ACBD5Q5T8D3 534 aaPredicted RBP5.68□□□□□ -1.5
VPS50-217ENST00000485140 TTLL7Q6ZT98 887 aa5.68□□□□□ -1.5
VPS50-217ENST00000485140 RIOX2Q8IUF8 465 aa5.68□□□□□ -1.5
VPS50-217ENST00000485140 SEC14L1Q92503 715 aa5.68□□□□□ -1.5
VPS50-217ENST00000485140 ACBD3Q9H3P7 528 aa5.68□□□□□ -1.5
VPS50-217ENST00000485140 EPB41L4AQ9HCS5 686 aaPredicted RBP5.68□□□□□ -1.5
VPS50-217ENST00000485140 SUSD2Q9UGT4 822 aa5.68□□□□□ -1.5
VPS50-217ENST00000485140 SH3D21A4FU49 640 aa5.67□□□□□ -1.5
VPS50-217ENST00000485140 ASGR2P07307 311 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms