RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 AEBP2Q6ZN18 517 aaPredicted RBP22.28■■□□□ 1.16
VPS50-217ENST00000485140 CHIC1Q5VXU3 224 aa21.58■■□□□ 1.05
VPS50-217ENST00000485140 SENP3Q9H4L4 574 aaPredicted RBP19.2■□□□□ 0.66
VPS50-217ENST00000485140 PHF23Q9BUL5 403 aaPredicted RBP18.83■□□□□ 0.6
VPS50-217ENST00000485140 FOXD1Q16676 465 aa17.81■□□□□ 0.44
VPS50-217ENST00000485140 PLPPR3Q6T4P5 718 aa17.5■□□□□ 0.39
VPS50-217ENST00000485140 POTEDQ86YR6 584 aa17.47■□□□□ 0.39
VPS50-217ENST00000485140 MSH5O43196 834 aa16.71■□□□□ 0.27
VPS50-217ENST00000485140 PIAS4Q8N2W9 510 aaPredicted RBP16.64■□□□□ 0.25
VPS50-217ENST00000485140 ADRA2BP18089 450 aa16.62■□□□□ 0.25
VPS50-217ENST00000485140 PPP6R1Q9UPN7 881 aa16.61■□□□□ 0.25
VPS50-217ENST00000485140 SCAF1Q9H7N4 1312 aaKnown RBP15.6■□□□□ 0.09
VPS50-217ENST00000485140 PPP4R3CPQ6ZMV5 832 aa15.26■□□□□ 0.03
VPS50-217ENST00000485140 DMRT2Q9Y5R5 561 aa15.2■□□□□ 0.02
VPS50-217ENST00000485140 MAPK8IP2Q13387 824 aaPredicted RBP15.1■□□□□ 0.01
VPS50-217ENST00000485140 CNKSR2Q8WXI2 1034 aa15.01□□□□□ -0.01
VPS50-217ENST00000485140 NCBP3Q53F19 620 aaKnown RBP14.99□□□□□ -0.01
VPS50-217ENST00000485140 RNF216Q9NWF9 866 aaPredicted RBP14.8□□□□□ -0.04
VPS50-217ENST00000485140 HOXD11P31277 338 aaPredicted RBP14.77□□□□□ -0.05
VPS50-217ENST00000485140 CACNB1Q02641 598 aaPredicted RBP14.77□□□□□ -0.05
VPS50-217ENST00000485140 NPM3O75607 178 aaKnown RBP14.51□□□□□ -0.09
VPS50-217ENST00000485140 DCAF8L1A6NGE4 600 aa14.49□□□□□ -0.09
VPS50-217ENST00000485140 KCNA4P22459 653 aa14.45□□□□□ -0.1
VPS50-217ENST00000485140 DNAJC5BQ9UF47 199 aa14.42□□□□□ -0.1
VPS50-217ENST00000485140 RNF39Q9H2S5 420 aa14.31□□□□□ -0.12
VPS50-217ENST00000485140 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.09□□□□□ -0.15
VPS50-217ENST00000485140 C1QBPQ07021 282 aaKnown RBP14.03□□□□□ -0.16
VPS50-217ENST00000485140 SLC4A1APQ9BWU0 796 aaKnown RBP13.83□□□□□ -0.2
VPS50-217ENST00000485140 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.77□□□□□ -0.21
VPS50-217ENST00000485140 APLP2Q06481 763 aa13.77□□□□□ -0.21
VPS50-217ENST00000485140 HNRNPUL2Q1KMD3 747 aaKnown RBP13.77□□□□□ -0.21
VPS50-217ENST00000485140 SLC4A2P04920 1241 aa13.71□□□□□ -0.21
VPS50-217ENST00000485140 U3KPZ7 1027 aaPredicted RBP13.71□□□□□ -0.21
VPS50-217ENST00000485140 SAMD1Q6SPF0 538 aaPredicted RBP13.63□□□□□ -0.23
VPS50-217ENST00000485140 MYCNP04198 464 aaPredicted RBP13.58□□□□□ -0.24
VPS50-217ENST00000485140 FOXD4L1Q9NU39 408 aa13.56□□□□□ -0.24
VPS50-217ENST00000485140 POTEHQ6S545 545 aa13.53□□□□□ -0.24
VPS50-217ENST00000485140 ZNF219Q9P2Y4 722 aaPredicted RBP13.46□□□□□ -0.25
VPS50-217ENST00000485140 CAPN15O75808 1086 aa13.45□□□□□ -0.26
VPS50-217ENST00000485140 SPINK5Q9NQ38 1064 aaPredicted RBP13.34□□□□□ -0.27
VPS50-217ENST00000485140 TRHP20396 242 aaPredicted RBP13.27□□□□□ -0.29
VPS50-217ENST00000485140 DSG3P32926 999 aa13.26□□□□□ -0.29
VPS50-217ENST00000485140 ATXN8OSP0DMR3 200 aa13.25□□□□□ -0.29
VPS50-217ENST00000485140 ZBTB22O15209 634 aa13.19□□□□□ -0.3
VPS50-217ENST00000485140 ZBTB12Q9Y330 459 aaPredicted RBP13.05□□□□□ -0.32
VPS50-217ENST00000485140 ABCB7O75027 752 aa13.04□□□□□ -0.32
VPS50-217ENST00000485140 POLA2Q14181 598 aa12.99□□□□□ -0.33
VPS50-217ENST00000485140 CSRNP3Q8WYN3 585 aa12.96□□□□□ -0.33
VPS50-217ENST00000485140 EHMT2Q96KQ7 1210 aa12.94□□□□□ -0.34
VPS50-217ENST00000485140 ATF5Q9Y2D1 282 aaPredicted RBP12.92□□□□□ -0.34
VPS50-217ENST00000485140 RBM42Q9BTD8 480 aaKnown RBP12.9□□□□□ -0.34
VPS50-217ENST00000485140 FBLN2P98095 1184 aa12.77□□□□□ -0.37
VPS50-217ENST00000485140 AKT1S1Q96B36 256 aa12.58□□□□□ -0.4
VPS50-217ENST00000485140 SPDYE2BA6NHP3 402 aa12.55□□□□□ -0.4
VPS50-217ENST00000485140 SPDYE6P0CI01 402 aa12.55□□□□□ -0.4
VPS50-217ENST00000485140 SPDYE2Q495Y8 402 aa12.55□□□□□ -0.4
VPS50-217ENST00000485140 CHRDL2Q6WN34 429 aa12.54□□□□□ -0.4
VPS50-217ENST00000485140 OSCARQ8IYS5 282 aa12.53□□□□□ -0.4
VPS50-217ENST00000485140 MKRN4PQ13434 485 aaPredicted RBP12.41□□□□□ -0.42
VPS50-217ENST00000485140 SP7Q8TDD2 431 aaPredicted RBP12.38□□□□□ -0.43
VPS50-217ENST00000485140 ZNF692Q9BU19 519 aaPredicted RBP12.36□□□□□ -0.43
VPS50-217ENST00000485140 REM2Q8IYK8 340 aaPredicted RBP12.33□□□□□ -0.44
VPS50-217ENST00000485140 SSUH2Q9Y2M2 353 aa12.32□□□□□ -0.44
VPS50-217ENST00000485140 SPDYE1Q8NFV5 336 aaPredicted RBP12.26□□□□□ -0.45
VPS50-217ENST00000485140 PIP4P2Q8N4L2 257 aa12.17□□□□□ -0.46
VPS50-217ENST00000485140 SPDYE4A6NLX3 237 aa12.15□□□□□ -0.46
VPS50-217ENST00000485140 PITPNM1O00562 1244 aa12.15□□□□□ -0.46
VPS50-217ENST00000485140 PABPN1Q86U42 306 aaKnown RBP eCLIP12.14□□□□□ -0.47
VPS50-217ENST00000485140 STAG3Q9UJ98 1225 aa12.11□□□□□ -0.47
VPS50-217ENST00000485140 CLEC11AQ9Y240 323 aa12.07□□□□□ -0.48
VPS50-217ENST00000485140 HAX1O00165 279 aa12.06□□□□□ -0.48
VPS50-217ENST00000485140 FXR2P51116 673 aaKnown RBP eCLIP12.05□□□□□ -0.48
VPS50-217ENST00000485140 EVX2Q03828 476 aa12.04□□□□□ -0.48
VPS50-217ENST00000485140 PRR29P0C7W0 189 aa12□□□□□ -0.49
VPS50-217ENST00000485140 PROM2Q8N271 834 aa11.9□□□□□ -0.5
VPS50-217ENST00000485140 PRKAR2AP13861 404 aaKnown RBP11.88□□□□□ -0.51
VPS50-217ENST00000485140 FKBP8Q14318 412 aa11.79□□□□□ -0.52
VPS50-217ENST00000485140 PLEKHG5O94827 1062 aa11.77□□□□□ -0.53
VPS50-217ENST00000485140 FBXO3Q9UK99 471 aa11.72□□□□□ -0.53
VPS50-217ENST00000485140 FARP1Q9Y4F1 1045 aaPredicted RBP11.7□□□□□ -0.54
VPS50-217ENST00000485140 NPM1P06748 294 aaKnown RBP eCLIP11.69□□□□□ -0.54
VPS50-217ENST00000485140 CHADLQ6NUI6 762 aa11.68□□□□□ -0.54
VPS50-217ENST00000485140 CLCN6P51797 869 aa11.66□□□□□ -0.54
VPS50-217ENST00000485140 CREBZFQ9NS37 354 aa11.66□□□□□ -0.54
VPS50-217ENST00000485140 C19orf67A6NJJ6 358 aa11.65□□□□□ -0.54
VPS50-217ENST00000485140 ZBTB47Q9UFB7 747 aaPredicted RBP11.64□□□□□ -0.55
VPS50-217ENST00000485140 LHX8Q68G74 356 aa11.62□□□□□ -0.55
VPS50-217ENST00000485140 GABBR2O75899 941 aa11.61□□□□□ -0.55
VPS50-217ENST00000485140 PAK3O75914 559 aaPredicted RBP11.6□□□□□ -0.55
VPS50-217ENST00000485140 MIER1Q8N108 512 aa11.56□□□□□ -0.56
VPS50-217ENST00000485140 CD44P16070 742 aaKnown RBP11.55□□□□□ -0.56
VPS50-217ENST00000485140 PLCD3Q8N3E9 789 aa11.55□□□□□ -0.56
VPS50-217ENST00000485140 MNX1P50219 401 aaPredicted RBP11.47□□□□□ -0.57
VPS50-217ENST00000485140 POTEIP0CG38 1075 aa11.46□□□□□ -0.57
VPS50-217ENST00000485140 ZNF579Q8NAF0 562 aaKnown RBP11.44□□□□□ -0.58
VPS50-217ENST00000485140 ZRANB1Q9UGI0 708 aa11.43□□□□□ -0.58
VPS50-217ENST00000485140 VASPP50552 380 aaPredicted RBP11.38□□□□□ -0.59
VPS50-217ENST00000485140 PLSCR2Q9NRY7 297 aa11.37□□□□□ -0.59
VPS50-217ENST00000485140 FAM212AQ96EL1 285 aa11.31□□□□□ -0.6
VPS50-217ENST00000485140 KLHL34Q8N239 644 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms