RNA–Protein interactions for RNA: ENST00000448971.5

USP39-206, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-206ENST00000448971 MTA3Q9BTC8 594 aa16.96■□□□□ 0.31
USP39-206ENST00000448971 LY9Q9HBG7 655 aa16.96■□□□□ 0.31
USP39-206ENST00000448971 PNMA2Q9UL42 364 aa16.96■□□□□ 0.31
USP39-206ENST00000448971 PLXNA1Q9UIW2 1896 aa16.96■□□□□ 0.31
USP39-206ENST00000448971 WDR19Q8NEZ3 1342 aa16.96■□□□□ 0.3
USP39-206ENST00000448971 DDAH1O94760 285 aa16.95■□□□□ 0.3
USP39-206ENST00000448971 CLTBP09497 229 aa16.95■□□□□ 0.3
USP39-206ENST00000448971 GRM4Q14833 912 aa16.95■□□□□ 0.3
USP39-206ENST00000448971 USH1GQ495M9 461 aa16.95■□□□□ 0.3
USP39-206ENST00000448971 NSMFQ6X4W1 530 aa16.95■□□□□ 0.3
USP39-206ENST00000448971 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.95■□□□□ 0.3
USP39-206ENST00000448971 RNF180Q86T96 592 aa16.95■□□□□ 0.3
USP39-206ENST00000448971 RASEFQ8IZ41 740 aa16.95■□□□□ 0.3
USP39-206ENST00000448971 ZNF654Q8IZM8 581 aa16.95■□□□□ 0.3
USP39-206ENST00000448971 LRRC2Q9BYS8 371 aa16.95■□□□□ 0.3
USP39-206ENST00000448971 A1CFQ9NQ94 594 aaKnown RBP16.95■□□□□ 0.3
USP39-206ENST00000448971 A0A1W2PQ45 241 aaPredicted RBP16.94■□□□□ 0.3
USP39-206ENST00000448971 A0A1W2PQY0 241 aa16.94■□□□□ 0.3
USP39-206ENST00000448971 KLRF2D3W0D1 207 aa16.94■□□□□ 0.3
USP39-206ENST00000448971 ADAMTS4O75173 837 aa16.94■□□□□ 0.3
USP39-206ENST00000448971 HSPA4P34932 840 aa16.94■□□□□ 0.3
USP39-206ENST00000448971 MUM1L1Q5H9M0 696 aa16.94■□□□□ 0.3
USP39-206ENST00000448971 ADGRF4Q8IZF3 695 aa16.94■□□□□ 0.3
USP39-206ENST00000448971 STAG2Q8N3U4 1231 aa16.94■□□□□ 0.3
USP39-206ENST00000448971 CTCFLQ8NI51 663 aaPredicted RBP16.94■□□□□ 0.3
USP39-206ENST00000448971 IGDCC4Q8TDY8 1250 aa16.94■□□□□ 0.3
USP39-206ENST00000448971 MYL10Q9BUA6 226 aa16.94■□□□□ 0.3
USP39-206ENST00000448971 VAT1LQ9HCJ6 419 aa16.94■□□□□ 0.3
USP39-206ENST00000448971 GPHNQ9NQX3 736 aaPredicted RBP16.94■□□□□ 0.3
USP39-206ENST00000448971 MAD2L2Q9UI95 211 aa16.94■□□□□ 0.3
USP39-206ENST00000448971 AKR1A1P14550 325 aa16.93■□□□□ 0.3
USP39-206ENST00000448971 FAAP100Q0VG06 881 aa16.93■□□□□ 0.3
USP39-206ENST00000448971 COL9A3Q14050 684 aaPredicted RBP16.93■□□□□ 0.3
USP39-206ENST00000448971 ADCK5Q3MIX3 580 aa16.93■□□□□ 0.3
USP39-206ENST00000448971 CCSAPQ6IQ19 270 aaPredicted RBP16.93■□□□□ 0.3
USP39-206ENST00000448971 ANKRD33Q7Z3H0 272 aa16.93■□□□□ 0.3
USP39-206ENST00000448971 KLHDC9Q8NEP7 349 aa16.93■□□□□ 0.3
USP39-206ENST00000448971 LENG1Q96BZ8 264 aaPredicted RBP16.93■□□□□ 0.3
USP39-206ENST00000448971 TCEANC2Q96MN5 208 aa16.93■□□□□ 0.3
USP39-206ENST00000448971 JAKMIP1Q96N16 626 aaKnown RBP16.93■□□□□ 0.3
USP39-206ENST00000448971 TOX2Q96NM4 488 aa16.93■□□□□ 0.3
USP39-206ENST00000448971 TSEN34Q9BSV6 310 aaKnown RBP16.93■□□□□ 0.3
USP39-206ENST00000448971 DNAJC25-GNG10A0A024R161 153 aa16.92■□□□□ 0.3
USP39-206ENST00000448971 TMEM265A0A087WTH1 108 aa16.92■□□□□ 0.3
USP39-206ENST00000448971 PTPDC1A2A3K4 754 aa16.92■□□□□ 0.3
USP39-206ENST00000448971 NFIBO00712 420 aa16.92■□□□□ 0.3
USP39-206ENST00000448971 PQBP1O60828 265 aaKnown RBP16.92■□□□□ 0.3
USP39-206ENST00000448971 SNAI1O95863 264 aaPredicted RBP16.92■□□□□ 0.3
USP39-206ENST00000448971 HMGB1P09429 215 aaKnown RBP16.92■□□□□ 0.3
USP39-206ENST00000448971 RAG1P15918 1043 aa16.92■□□□□ 0.3
USP39-206ENST00000448971 KIF5BP33176 963 aa16.92■□□□□ 0.3
USP39-206ENST00000448971 FGD1P98174 961 aa16.92■□□□□ 0.3
USP39-206ENST00000448971 TROAPQ12815 778 aa16.92■□□□□ 0.3
USP39-206ENST00000448971 QRICH1Q2TAL8 776 aa16.92■□□□□ 0.3
USP39-206ENST00000448971 TSGA10IPQ3SY00 556 aa16.92■□□□□ 0.3
USP39-206ENST00000448971 HOMER1Q86YM7 354 aa16.92■□□□□ 0.3
USP39-206ENST00000448971 TMTC2Q8N394 836 aa16.92■□□□□ 0.3
USP39-206ENST00000448971 RNPC3Q96LT9 517 aaKnown RBP16.92■□□□□ 0.3
USP39-206ENST00000448971 TMEM39AQ9NV64 488 aa16.92■□□□□ 0.3
USP39-206ENST00000448971 CNPY2Q9Y2B0 182 aa16.92■□□□□ 0.3
USP39-206ENST00000448971 SLC12A7Q9Y666 1083 aa16.92■□□□□ 0.3
USP39-206ENST00000448971 NCOR1O75376 2440 aa16.91■□□□□ 0.3
USP39-206ENST00000448971 PALM3A6NDB9 673 aaPredicted RBP16.91■□□□□ 0.3
USP39-206ENST00000448971 RXRAP19793 462 aa16.91■□□□□ 0.3
USP39-206ENST00000448971 LIFRP42702 1097 aa16.91■□□□□ 0.3
USP39-206ENST00000448971 ACLYP53396 1101 aa16.91■□□□□ 0.3
USP39-206ENST00000448971 MAMDC4Q6UXC1 1216 aa16.91■□□□□ 0.3
USP39-206ENST00000448971 DHX32Q7L7V1 743 aaKnown RBP16.91■□□□□ 0.3
USP39-206ENST00000448971 MICU3Q86XE3 530 aa16.91■□□□□ 0.3
USP39-206ENST00000448971 RAB11FIP4Q86YS3 637 aa16.91■□□□□ 0.3
USP39-206ENST00000448971 MSL3Q8N5Y2 521 aaKnown RBP16.91■□□□□ 0.3
USP39-206ENST00000448971 JMJD4Q9H9V9 463 aa16.91■□□□□ 0.3
USP39-206ENST00000448971 CYP39A1Q9NYL5 469 aa16.91■□□□□ 0.3
USP39-206ENST00000448971 ZHX1Q9UKY1 873 aaPredicted RBP16.91■□□□□ 0.3
USP39-206ENST00000448971 SNX14Q9Y5W7 946 aa16.91■□□□□ 0.3
USP39-206ENST00000448971 ABCB11O95342 1321 aa16.91■□□□□ 0.3
USP39-206ENST00000448971 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.9■□□□□ 0.3
USP39-206ENST00000448971 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.9■□□□□ 0.3
USP39-206ENST00000448971 EPB41L2O43491 1005 aaKnown RBP16.9■□□□□ 0.3
USP39-206ENST00000448971 CALM1P0DP23 149 aa16.9■□□□□ 0.3
USP39-206ENST00000448971 CALM2P0DP24 149 aa16.9■□□□□ 0.3
USP39-206ENST00000448971 CALM3P0DP25 149 aa16.9■□□□□ 0.3
USP39-206ENST00000448971 FOSL2P15408 326 aa16.9■□□□□ 0.3
USP39-206ENST00000448971 CNTN2Q02246 1040 aa16.9■□□□□ 0.3
USP39-206ENST00000448971 FPGSQ05932 587 aa16.9■□□□□ 0.3
USP39-206ENST00000448971 GRIN2CQ14957 1233 aa16.9■□□□□ 0.3
USP39-206ENST00000448971 KCNA10Q16322 511 aa16.9■□□□□ 0.3
USP39-206ENST00000448971 BLOC1S2Q6QNY1 142 aa16.9■□□□□ 0.3
USP39-206ENST00000448971 SLC30A10Q6XR72 485 aa16.9■□□□□ 0.3
USP39-206ENST00000448971 SYNE3Q6ZMZ3 975 aa16.9■□□□□ 0.3
USP39-206ENST00000448971 ZNF467Q7Z7K2 595 aaPredicted RBP16.9■□□□□ 0.3
USP39-206ENST00000448971 FBXO11Q86XK2 927 aa16.9■□□□□ 0.3
USP39-206ENST00000448971 CCDC144CPQ8IYA2 1237 aa16.9■□□□□ 0.3
USP39-206ENST00000448971 SYNGAP1Q96PV0 1343 aa16.9■□□□□ 0.3
USP39-206ENST00000448971 SYNRGQ9UMZ2 1314 aa16.9■□□□□ 0.3
USP39-206ENST00000448971 CHD9Q3L8U1 2897 aa16.9■□□□□ 0.3
USP39-206ENST00000448971 ZBTB5O15062 677 aa16.89■□□□□ 0.29
USP39-206ENST00000448971 TIMP1P01033 207 aa16.89■□□□□ 0.29
USP39-206ENST00000448971 CALML3P27482 149 aa16.89■□□□□ 0.29
USP39-206ENST00000448971 CDK7P50613 346 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms