RNA–Protein interactions for RNA: ENST00000425518.5

SMARCC1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 2

Gene SMARCC1, Length 3,827 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-202ENST00000425518 SH3GLB2Q9NR46 395 aa8.38□□□□□ -1.07
SMARCC1-202ENST00000425518 EHD2Q9NZN4 543 aa8.38□□□□□ -1.07
SMARCC1-202ENST00000425518 BIN2Q9UBW5 565 aaPredicted RBP8.38□□□□□ -1.07
SMARCC1-202ENST00000425518 MKRN1Q9UHC7 482 aaKnown RBP8.38□□□□□ -1.07
SMARCC1-202ENST00000425518 TIAM2Q8IVF5 1701 aa8.38□□□□□ -1.07
SMARCC1-202ENST00000425518 MYH8P13535 1937 aa8.38□□□□□ -1.07
SMARCC1-202ENST00000425518 GOLGA6BA6NDN3 693 aa8.38□□□□□ -1.07
SMARCC1-202ENST00000425518 KCNQ2O43526 872 aa8.38□□□□□ -1.07
SMARCC1-202ENST00000425518 EIF4A3P38919 411 aaKnown RBP8.38□□□□□ -1.07
SMARCC1-202ENST00000425518 SF3B3Q15393 1217 aaKnown RBP8.38□□□□□ -1.07
SMARCC1-202ENST00000425518 C12orf60Q5U649 245 aa8.38□□□□□ -1.07
SMARCC1-202ENST00000425518 TTC19Q6DKK2 380 aaPredicted RBP8.38□□□□□ -1.07
SMARCC1-202ENST00000425518 MAPKAPK5Q8IW41 473 aa8.38□□□□□ -1.07
SMARCC1-202ENST00000425518 SH3RF3Q8TEJ3 882 aaPredicted RBP8.38□□□□□ -1.07
SMARCC1-202ENST00000425518 TTYH3Q9C0H2 523 aa8.38□□□□□ -1.07
SMARCC1-202ENST00000425518 BARHL2Q9NY43 387 aa8.38□□□□□ -1.07
SMARCC1-202ENST00000425518 DMGDHQ9UI17 866 aaKnown RBP8.38□□□□□ -1.07
SMARCC1-202ENST00000425518 PCDHA13Q9Y5I0 950 aa8.38□□□□□ -1.07
SMARCC1-202ENST00000425518 CAPN6Q9Y6Q1 641 aa8.38□□□□□ -1.07
SMARCC1-202ENST00000425518 STXBP3O00186 592 aa8.38□□□□□ -1.07
SMARCC1-202ENST00000425518 EPHB6O15197 1021 aa8.38□□□□□ -1.07
SMARCC1-202ENST00000425518 NCK2O43639 380 aa8.38□□□□□ -1.07
SMARCC1-202ENST00000425518 AMPD3Q01432 767 aa8.38□□□□□ -1.07
SMARCC1-202ENST00000425518 GRM4Q14833 912 aa8.38□□□□□ -1.07
SMARCC1-202ENST00000425518 SBK1Q52WX2 424 aa8.38□□□□□ -1.07
SMARCC1-202ENST00000425518 SOGA3Q5TF21 947 aa8.38□□□□□ -1.07
SMARCC1-202ENST00000425518 IQCEQ6IPM2 695 aa8.38□□□□□ -1.07
SMARCC1-202ENST00000425518 NFRKBQ6P4R8 1299 aa8.38□□□□□ -1.07
SMARCC1-202ENST00000425518 USP17L2Q6R6M4 530 aa8.38□□□□□ -1.07
SMARCC1-202ENST00000425518 AMOTL1Q8IY63 956 aa8.38□□□□□ -1.07
SMARCC1-202ENST00000425518 RETREG2Q8NC44 543 aa8.38□□□□□ -1.07
SMARCC1-202ENST00000425518 CALML4Q96GE6 196 aa8.38□□□□□ -1.07
SMARCC1-202ENST00000425518 TMEM47Q9BQJ4 181 aa8.38□□□□□ -1.07
SMARCC1-202ENST00000425518 TARSL2A2RTX5 802 aaKnown RBP8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 GOLGA6CA6NDK9 693 aa8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 ZPR1O75312 459 aa8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 MYL1P05976 194 aa8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 GOLGA6DP0CG33 693 aa8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 MAGEA1P43355 309 aa8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 NONOQ15233 471 aaKnown RBP eCLIP8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 LRRC41Q15345 812 aa8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 ENOX2Q16206 610 aaKnown RBP8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 MIIPQ5JXC2 388 aa8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 FAM76AQ8TAV0 307 aa8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 CDK5RAP3Q96JB5 506 aa8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 NLRP3Q96P20 1036 aa8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 UIMC1Q96RL1 719 aa8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 UBA5Q9GZZ9 404 aa8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 SEMA6BQ9H3T3 888 aa8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 GOLGA6AQ9NYA3 693 aa8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 BUB1O43683 1085 aa8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 PRPF6O94906 941 aaKnown RBP8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 AARSP49588 968 aaKnown RBP eCLIP8.37□□□□□ -1.072e-6■■■■□ 23.5
SMARCC1-202ENST00000425518 SV2BQ7L1I2 683 aa8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 TRIM58Q8NG06 486 aa8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 RRP36Q96EU6 259 aaKnown RBP8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 ARHGAP20Q9P2F6 1191 aa8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 SNX12Q9UMY4 172 aa8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 JRKLQ9Y4A0 524 aa8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 BAZ2AQ9UIF9 1905 aaKnown RBP8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 BCL9LQ86UU0 1499 aa8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 M0R2N6 131 aa8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 LDHBP07195 334 aaKnown RBP8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 KIF11P52732 1056 aa8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 TDRD12Q587J7 1177 aaKnown RBP8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 TBC1D9BQ66K14 1250 aa8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 CNNM4Q6P4Q7 775 aa8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 CACNA2D4Q7Z3S7 1137 aa8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 CREG2Q8IUH2 290 aa8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 CCDC155Q8N6L0 562 aa8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 KIAA0895Q8NCT3 520 aa8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 SPATA4Q8NEY3 305 aa8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 TBCKQ8TEA7 893 aa8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 NDST4Q9H3R1 872 aa8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 ANKIB1Q9P2G1 1089 aa8.37□□□□□ -1.07
SMARCC1-202ENST00000425518 NUP98P52948 1817 aa8.36□□□□□ -1.07
SMARCC1-202ENST00000425518 ANO9A1A5B4 782 aa8.36□□□□□ -1.07
SMARCC1-202ENST00000425518 AGPSO00116 658 aa8.36□□□□□ -1.07
SMARCC1-202ENST00000425518 RNASE9P60153 205 aaKnown RBP8.36□□□□□ -1.07
SMARCC1-202ENST00000425518 RASSF7Q02833 373 aa8.36□□□□□ -1.07
SMARCC1-202ENST00000425518 SLC20A2Q08357 652 aa8.36□□□□□ -1.07
SMARCC1-202ENST00000425518 VWA3BQ502W6 1294 aa8.36□□□□□ -1.07
SMARCC1-202ENST00000425518 NEK8Q86SG6 692 aa8.36□□□□□ -1.07
SMARCC1-202ENST00000425518 SLC51AQ86UW1 340 aa8.36□□□□□ -1.07
SMARCC1-202ENST00000425518 NBPF5PQ86XG9 351 aaPredicted RBP8.36□□□□□ -1.07
SMARCC1-202ENST00000425518 TSGA10Q9BZW7 698 aa8.36□□□□□ -1.07
SMARCC1-202ENST00000425518 EHD4Q9H223 541 aa8.36□□□□□ -1.07
SMARCC1-202ENST00000425518 C6orf50Q9HD87 102 aa8.36□□□□□ -1.07
SMARCC1-202ENST00000425518 NLRC4Q9NPP4 1024 aa8.36□□□□□ -1.07
SMARCC1-202ENST00000425518 TMEM260Q9NX78 707 aa8.36□□□□□ -1.07
SMARCC1-202ENST00000425518 MYH3P11055 1940 aa8.36□□□□□ -1.07
SMARCC1-202ENST00000425518 MYH6P13533 1939 aa8.36□□□□□ -1.07
SMARCC1-202ENST00000425518 CHD4Q14839 1912 aa8.36□□□□□ -1.07
SMARCC1-202ENST00000425518 PPFIA4O75335 1185 aa8.36□□□□□ -1.07
SMARCC1-202ENST00000425518 RPS6KA5O75582 802 aa8.36□□□□□ -1.07
SMARCC1-202ENST00000425518 SSBP05455 408 aaKnown RBP eCLIP8.36□□□□□ -1.07
SMARCC1-202ENST00000425518 PAFAH1B1P43034 410 aa8.36□□□□□ -1.07
SMARCC1-202ENST00000425518 KRT25Q7Z3Z0 450 aa8.36□□□□□ -1.07
SMARCC1-202ENST00000425518 POTEDQ86YR6 584 aa8.36□□□□□ -1.07
SMARCC1-202ENST00000425518 MARCH10Q8NA82 808 aaPredicted RBP8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms