RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 RTCBQ9Y3I0 505 aaKnown RBP14.36□□□□□ -0.11
HMGCS1-201ENST00000325110 TRAF5O00463 557 aa14.36□□□□□ -0.11
HMGCS1-201ENST00000325110 RIMBP2O15034 1052 aa14.36□□□□□ -0.11
HMGCS1-201ENST00000325110 HERVK_113P62684 666 aa14.36□□□□□ -0.11
HMGCS1-201ENST00000325110 CALCRLQ16602 461 aa14.36□□□□□ -0.11
HMGCS1-201ENST00000325110 TTC19Q6DKK2 380 aaPredicted RBP14.36□□□□□ -0.11
HMGCS1-201ENST00000325110 KRT25Q7Z3Z0 450 aa14.36□□□□□ -0.11
HMGCS1-201ENST00000325110 TRIM9Q9C026 710 aa14.36□□□□□ -0.11
HMGCS1-201ENST00000325110 L1RE1Q9UN81 338 aa14.36□□□□□ -0.11
HMGCS1-201ENST00000325110 COL1A1P02452 1464 aaPredicted RBP14.35□□□□□ -0.11
HMGCS1-201ENST00000325110 TRIM66O15016 1216 aa14.35□□□□□ -0.11
HMGCS1-201ENST00000325110 CNNM4Q6P4Q7 775 aa14.35□□□□□ -0.11
HMGCS1-201ENST00000325110 WDR66Q8TBY9 1149 aa14.35□□□□□ -0.11
HMGCS1-201ENST00000325110 EXOC4Q96A65 974 aa14.35□□□□□ -0.11
HMGCS1-201ENST00000325110 NGLY1Q96IV0 654 aa14.35□□□□□ -0.11
HMGCS1-201ENST00000325110 EHD2Q9NZN4 543 aa14.35□□□□□ -0.11
HMGCS1-201ENST00000325110 MYO1AQ9UBC5 1043 aa14.35□□□□□ -0.11
HMGCS1-201ENST00000325110 PAFAH1B1P43034 410 aa14.35□□□□□ -0.11
HMGCS1-201ENST00000325110 MAGEA1P43355 309 aa14.35□□□□□ -0.11
HMGCS1-201ENST00000325110 THAP9Q9H5L6 903 aa14.35□□□□□ -0.11
HMGCS1-201ENST00000325110 BARHL2Q9NY43 387 aa14.35□□□□□ -0.11
HMGCS1-201ENST00000325110 MAD2L2Q9UI95 211 aa14.35□□□□□ -0.11
HMGCS1-201ENST00000325110 ACTN2P35609 894 aa14.35□□□□□ -0.11
HMGCS1-201ENST00000325110 KRT79Q5XKE5 535 aa14.35□□□□□ -0.11
HMGCS1-201ENST00000325110 IQCEQ6IPM2 695 aa14.35□□□□□ -0.11
HMGCS1-201ENST00000325110 ZNF804AQ7Z570 1209 aa14.35□□□□□ -0.11
HMGCS1-201ENST00000325110 CCDC155Q8N6L0 562 aa14.35□□□□□ -0.11
HMGCS1-201ENST00000325110 POLD4Q9HCU8 107 aa14.35□□□□□ -0.11
HMGCS1-201ENST00000325110 RCCD1A6NED2 376 aa14.34□□□□□ -0.11
HMGCS1-201ENST00000325110 NCK2O43639 380 aa14.34□□□□□ -0.11
HMGCS1-201ENST00000325110 EIF4A3P38919 411 aaKnown RBP14.34□□□□□ -0.11
HMGCS1-201ENST00000325110 GRM4Q14833 912 aa14.34□□□□□ -0.11
HMGCS1-201ENST00000325110 UBE2SQ16763 222 aa14.34□□□□□ -0.11
HMGCS1-201ENST00000325110 CLEC4GQ6UXB4 293 aa14.34□□□□□ -0.11
HMGCS1-201ENST00000325110 AFAP1L1Q8TED9 768 aa14.34□□□□□ -0.11
HMGCS1-201ENST00000325110 ALS2CR12Q96Q35 445 aa14.34□□□□□ -0.11
HMGCS1-201ENST00000325110 CCNL1Q9UK58 526 aaPredicted RBP14.34□□□□□ -0.11
HMGCS1-201ENST00000325110 CAPN11Q9UMQ6 739 aa14.34□□□□□ -0.11
HMGCS1-201ENST00000325110 STXBP3O00186 592 aa14.34□□□□□ -0.11
HMGCS1-201ENST00000325110 GSTO1P78417 241 aa14.34□□□□□ -0.11
HMGCS1-201ENST00000325110 ZBED6P86452 979 aa14.34□□□□□ -0.11
HMGCS1-201ENST00000325110 IFT81Q8WYA0 676 aa14.34□□□□□ -0.11
HMGCS1-201ENST00000325110 TSG101Q99816 390 aa14.34□□□□□ -0.11
HMGCS1-201ENST00000325110 USP17L5A8MUK1 530 aa14.33□□□□□ -0.11
HMGCS1-201ENST00000325110 TDP2O95551 362 aa14.33□□□□□ -0.11
HMGCS1-201ENST00000325110 CDK8P49336 464 aa14.33□□□□□ -0.11
HMGCS1-201ENST00000325110 MFSD14BQ5SR56 506 aa14.33□□□□□ -0.11
HMGCS1-201ENST00000325110 TTI2Q6NXR4 508 aa14.33□□□□□ -0.11
HMGCS1-201ENST00000325110 TMC4Q7Z404 712 aa14.33□□□□□ -0.11
HMGCS1-201ENST00000325110 CEP95Q96GE4 821 aa14.33□□□□□ -0.11
HMGCS1-201ENST00000325110 DHTKD1Q96HY7 919 aaPredicted RBP14.33□□□□□ -0.11
HMGCS1-201ENST00000325110 BMP2KQ9NSY1 1161 aaPredicted RBP14.33□□□□□ -0.11
HMGCS1-201ENST00000325110 NID2Q14112 1375 aa14.33□□□□□ -0.12
HMGCS1-201ENST00000325110 LRRC10BA6NIK2 292 aa14.33□□□□□ -0.12
HMGCS1-201ENST00000325110 NKRFO15226 690 aaKnown RBP eCLIP14.33□□□□□ -0.12
HMGCS1-201ENST00000325110 SLC16A2P36021 539 aa14.33□□□□□ -0.12
HMGCS1-201ENST00000325110 RASSF7Q02833 373 aa14.33□□□□□ -0.12
HMGCS1-201ENST00000325110 WDR59Q6PJI9 974 aa14.33□□□□□ -0.12
HMGCS1-201ENST00000325110 GIMAP8Q8ND71 665 aaPredicted RBP14.33□□□□□ -0.12
HMGCS1-201ENST00000325110 NUP58Q9BVL2 599 aa14.33□□□□□ -0.12
HMGCS1-201ENST00000325110 RAB34Q9BZG1 259 aa14.33□□□□□ -0.12
HMGCS1-201ENST00000325110 RHOBTB3O94955 611 aa14.33□□□□□ -0.12
HMGCS1-201ENST00000325110 RAPGEF1Q13905 1077 aa14.33□□□□□ -0.12
HMGCS1-201ENST00000325110 TCERG1LQ5VWI1 586 aa14.33□□□□□ -0.12
HMGCS1-201ENST00000325110 NFRKBQ6P4R8 1299 aa14.33□□□□□ -0.12
HMGCS1-201ENST00000325110 MSANTD4Q8NCY6 345 aa14.33□□□□□ -0.12
HMGCS1-201ENST00000325110 MCM3P25205 808 aa14.32□□□□□ -0.12
HMGCS1-201ENST00000325110 USP14P54578 494 aa14.32□□□□□ -0.12
HMGCS1-201ENST00000325110 CNBD1Q8NA66 436 aa14.32□□□□□ -0.12
HMGCS1-201ENST00000325110 GOLGA5Q8TBA6 731 aa14.32□□□□□ -0.12
HMGCS1-201ENST00000325110 CDCA7Q9BWT1 371 aaPredicted RBP14.32□□□□□ -0.12
HMGCS1-201ENST00000325110 SRGNP10124 158 aa14.32□□□□□ -0.12
HMGCS1-201ENST00000325110 KIF11P52732 1056 aa14.32□□□□□ -0.12
HMGCS1-201ENST00000325110 EZH2Q15910 746 aaKnown RBP14.32□□□□□ -0.12
HMGCS1-201ENST00000325110 FOXR1Q6PIV2 292 aa14.32□□□□□ -0.12
HMGCS1-201ENST00000325110 FAM71BQ8TC56 605 aa14.32□□□□□ -0.12
HMGCS1-201ENST00000325110 DUSP9Q99956 384 aaKnown RBP14.32□□□□□ -0.12
HMGCS1-201ENST00000325110 NDST4Q9H3R1 872 aa14.32□□□□□ -0.12
HMGCS1-201ENST00000325110 PDS5AQ29RF7 1337 aaKnown RBP14.32□□□□□ -0.12
HMGCS1-201ENST00000325110 MYH8P13535 1937 aa14.32□□□□□ -0.12
HMGCS1-201ENST00000325110 GOLGA6BA6NDN3 693 aa14.32□□□□□ -0.12
HMGCS1-201ENST00000325110 RASA1P20936 1047 aa14.32□□□□□ -0.12
HMGCS1-201ENST00000325110 C4orf32Q8N8J7 132 aa14.32□□□□□ -0.12
HMGCS1-201ENST00000325110 NOC3LQ8WTT2 800 aaKnown RBP14.32□□□□□ -0.12
HMGCS1-201ENST00000325110 LARP4BQ92615 738 aaKnown RBP14.32□□□□□ -0.12
HMGCS1-201ENST00000325110 MAP2K7O14733 419 aa14.31□□□□□ -0.12
HMGCS1-201ENST00000325110 KLRC4O43908 158 aa14.31□□□□□ -0.12
HMGCS1-201ENST00000325110 TUBB4BP68371 445 aa14.31□□□□□ -0.12
HMGCS1-201ENST00000325110 ZSCAN29Q8IWY8 852 aaPredicted RBP14.31□□□□□ -0.12
HMGCS1-201ENST00000325110 CCSER1Q9C0I3 900 aa14.31□□□□□ -0.12
HMGCS1-201ENST00000325110 KBTBD4Q9NVX7 518 aa14.31□□□□□ -0.12
HMGCS1-201ENST00000325110 LCMT1Q9UIC8 334 aa14.31□□□□□ -0.12
HMGCS1-201ENST00000325110 CAPN6Q9Y6Q1 641 aa14.31□□□□□ -0.12
HMGCS1-201ENST00000325110 LRRC53A6NM62 1247 aa14.31□□□□□ -0.12
HMGCS1-201ENST00000325110 GGCXP38435 758 aa14.31□□□□□ -0.12
HMGCS1-201ENST00000325110 KCNB1Q14721 858 aa14.31□□□□□ -0.12
HMGCS1-201ENST00000325110 KCTD19Q17RG1 926 aaPredicted RBP14.31□□□□□ -0.12
HMGCS1-201ENST00000325110 SBK1Q52WX2 424 aa14.31□□□□□ -0.12
HMGCS1-201ENST00000325110 TRAPPC11Q7Z392 1133 aa14.31□□□□□ -0.12
HMGCS1-201ENST00000325110 A0A1W2PQC6 194 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms