RNA–Protein interactions for RNA: ENST00000263856.8

CHMP3-201, Transcript of charged multivesicular body protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP3, Length 3,171 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-201ENST00000263856 ZNF507Q8TCN5 953 aa13.8□□□□□ -0.2
CHMP3-201ENST00000263856 TGFBRAP1Q8WUH2 860 aa13.8□□□□□ -0.2
CHMP3-201ENST00000263856 TBC1D7Q9P0N9 293 aa13.8□□□□□ -0.2
CHMP3-201ENST00000263856 MARCH6O60337 910 aa13.79□□□□□ -0.2
CHMP3-201ENST00000263856 TUBBP07437 444 aa13.79□□□□□ -0.2
CHMP3-201ENST00000263856 LIG3P49916 1009 aa13.79□□□□□ -0.2
CHMP3-201ENST00000263856 ZBED6P86452 979 aa13.79□□□□□ -0.2
CHMP3-201ENST00000263856 RASSF7Q02833 373 aa13.79□□□□□ -0.2
CHMP3-201ENST00000263856 RCSD1Q6JBY9 416 aa13.79□□□□□ -0.2
CHMP3-201ENST00000263856 C4orf32Q8N8J7 132 aa13.79□□□□□ -0.2
CHMP3-201ENST00000263856 MS4A14Q96JA4 679 aa13.79□□□□□ -0.2
CHMP3-201ENST00000263856 ZEB2O60315 1214 aa13.79□□□□□ -0.2
CHMP3-201ENST00000263856 TXNRD3Q86VQ6 643 aa13.79□□□□□ -0.2
CHMP3-201ENST00000263856 TIAM2Q8IVF5 1701 aa13.79□□□□□ -0.2
CHMP3-201ENST00000263856 GIMAP8Q8ND71 665 aaPredicted RBP13.79□□□□□ -0.2
CHMP3-201ENST00000263856 UBA5Q9GZZ9 404 aa13.79□□□□□ -0.2
CHMP3-201ENST00000263856 ZHX3Q9H4I2 956 aa13.79□□□□□ -0.2
CHMP3-201ENST00000263856 DUOX1Q9NRD9 1551 aa13.79□□□□□ -0.2
CHMP3-201ENST00000263856 CICQ96RK0 1608 aaPredicted RBP13.79□□□□□ -0.2
CHMP3-201ENST00000263856 ZNF263O14978 683 aa13.79□□□□□ -0.2
CHMP3-201ENST00000263856 CCNE1P24864 410 aa13.79□□□□□ -0.2
CHMP3-201ENST00000263856 KIF11P52732 1056 aa13.79□□□□□ -0.2
CHMP3-201ENST00000263856 GNGT1P63211 74 aa13.79□□□□□ -0.2
CHMP3-201ENST00000263856 UBE4AQ14139 1066 aa13.79□□□□□ -0.2
CHMP3-201ENST00000263856 SOGA3Q5TF21 947 aa13.79□□□□□ -0.2
CHMP3-201ENST00000263856 IQCEQ6IPM2 695 aa13.79□□□□□ -0.2
CHMP3-201ENST00000263856 USP17L2Q6R6M4 530 aa13.79□□□□□ -0.2
CHMP3-201ENST00000263856 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.79□□□□□ -0.2
CHMP3-201ENST00000263856 FAM107BQ9H098 131 aa13.79□□□□□ -0.2
CHMP3-201ENST00000263856 PLEKHG2Q9H7P9 1386 aa13.79□□□□□ -0.2
CHMP3-201ENST00000263856 A0A1W2PQC6 194 aa13.78□□□□□ -0.2
CHMP3-201ENST00000263856 BICDL2A1A5D9 508 aa13.78□□□□□ -0.2
CHMP3-201ENST00000263856 MAGEA1P43355 309 aa13.78□□□□□ -0.2
CHMP3-201ENST00000263856 VAV2P52735 878 aa13.78□□□□□ -0.2
CHMP3-201ENST00000263856 EIF6P56537 245 aaKnown RBP13.78□□□□□ -0.2
CHMP3-201ENST00000263856 GFPT1Q06210 699 aaPredicted RBP13.78□□□□□ -0.2
CHMP3-201ENST00000263856 PAPD7Q5XG87 772 aaKnown RBP13.78□□□□□ -0.2
CHMP3-201ENST00000263856 CCNI2Q6ZMN8 369 aaPredicted RBP13.78□□□□□ -0.2
CHMP3-201ENST00000263856 BCAS4Q8TDM0 211 aa13.78□□□□□ -0.2
CHMP3-201ENST00000263856 GJA10Q969M2 543 aa13.78□□□□□ -0.2
CHMP3-201ENST00000263856 TRIM9Q9C026 710 aa13.78□□□□□ -0.2
CHMP3-201ENST00000263856 IL17RBQ9NRM6 502 aa13.78□□□□□ -0.2
CHMP3-201ENST00000263856 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.78□□□□□ -0.2
CHMP3-201ENST00000263856 PCDHA13Q9Y5I0 950 aa13.78□□□□□ -0.2
CHMP3-201ENST00000263856 PAPPAQ13219 1627 aa13.78□□□□□ -0.2
CHMP3-201ENST00000263856 SMCO2A6NFE2 343 aa13.78□□□□□ -0.2
CHMP3-201ENST00000263856 RASSF10A6NK89 507 aa13.78□□□□□ -0.2
CHMP3-201ENST00000263856 KLRF2D3W0D1 207 aa13.78□□□□□ -0.2
CHMP3-201ENST00000263856 CYTH3O43739 400 aa13.78□□□□□ -0.2
CHMP3-201ENST00000263856 RHOBTB3O94955 611 aa13.78□□□□□ -0.2
CHMP3-201ENST00000263856 OR52Z1P0C646 297 aa13.78□□□□□ -0.2
CHMP3-201ENST00000263856 GUCY2FP51841 1108 aa13.78□□□□□ -0.2
CHMP3-201ENST00000263856 FAM114A1Q8IWE2 563 aa13.78□□□□□ -0.2
CHMP3-201ENST00000263856 SH2D3CQ8N5H7 860 aa13.78□□□□□ -0.2
CHMP3-201ENST00000263856 TMEM260Q9NX78 707 aa13.78□□□□□ -0.2
CHMP3-201ENST00000263856 ARPP21Q9UBL0 812 aaPredicted RBP13.78□□□□□ -0.2
CHMP3-201ENST00000263856 MKRN1Q9UHC7 482 aaKnown RBP13.78□□□□□ -0.2
CHMP3-201ENST00000263856 PACSIN2Q9UNF0 486 aaPredicted RBP13.78□□□□□ -0.2
CHMP3-201ENST00000263856 LRRC53A6NM62 1247 aa13.77□□□□□ -0.2
CHMP3-201ENST00000263856 PAFAH1B1P43034 410 aa13.77□□□□□ -0.2
CHMP3-201ENST00000263856 PACS2Q86VP3 889 aa13.77□□□□□ -0.2
CHMP3-201ENST00000263856 POTEDQ86YR6 584 aa13.77□□□□□ -0.2
CHMP3-201ENST00000263856 AMOTL1Q8IY63 956 aa13.77□□□□□ -0.2
CHMP3-201ENST00000263856 SH3RF3Q8TEJ3 882 aaPredicted RBP13.77□□□□□ -0.2
CHMP3-201ENST00000263856 CALML4Q96GE6 196 aa13.77□□□□□ -0.2
CHMP3-201ENST00000263856 ALS2CR12Q96Q35 445 aa13.77□□□□□ -0.2
CHMP3-201ENST00000263856 ZNF652Q9Y2D9 606 aa13.77□□□□□ -0.2
CHMP3-201ENST00000263856 ZSCAN5CA6NGD5 496 aaPredicted RBP13.77□□□□□ -0.21
CHMP3-201ENST00000263856 C8orf74Q6P047 294 aa13.77□□□□□ -0.21
CHMP3-201ENST00000263856 NUP58Q9BVL2 599 aa13.77□□□□□ -0.21
CHMP3-201ENST00000263856 ANKIB1Q9P2G1 1089 aa13.77□□□□□ -0.21
CHMP3-201ENST00000263856 ZNF335Q9H4Z2 1342 aaPredicted RBP13.77□□□□□ -0.21
CHMP3-201ENST00000263856 COL4A1P02462 1669 aa13.77□□□□□ -0.21
CHMP3-201ENST00000263856 ITGB4P16144 1822 aa13.77□□□□□ -0.21
CHMP3-201ENST00000263856 PPFIA4O75335 1185 aa13.77□□□□□ -0.21
CHMP3-201ENST00000263856 PRPF6O94906 941 aaKnown RBP13.77□□□□□ -0.21
CHMP3-201ENST00000263856 CACNB1Q02641 598 aaPredicted RBP13.77□□□□□ -0.21
CHMP3-201ENST00000263856 DDB1Q16531 1140 aa13.77□□□□□ -0.21
CHMP3-201ENST00000263856 DHTKD1Q96HY7 919 aaPredicted RBP13.77□□□□□ -0.21
CHMP3-201ENST00000263856 KBTBD4Q9NVX7 518 aa13.77□□□□□ -0.21
CHMP3-201ENST00000263856 ARHGAP20Q9P2F6 1191 aa13.77□□□□□ -0.21
CHMP3-201ENST00000263856 STRCP1A6NGW2 1772 aa13.77□□□□□ -0.21
CHMP3-201ENST00000263856 FRMPD2Q68DX3 1309 aaPredicted RBP13.76□□□□□ -0.21
CHMP3-201ENST00000263856 DOCK2Q92608 1830 aa13.76□□□□□ -0.21
CHMP3-201ENST00000263856 POTEMA6NI47 508 aa13.76□□□□□ -0.21
CHMP3-201ENST00000263856 KCNQ2O43526 872 aa13.76□□□□□ -0.21
CHMP3-201ENST00000263856 ORC4O43929 436 aa13.76□□□□□ -0.21
CHMP3-201ENST00000263856 FTCDO95954 541 aa13.76□□□□□ -0.21
CHMP3-201ENST00000263856 APBA1Q02410 837 aa13.76□□□□□ -0.21
CHMP3-201ENST00000263856 NONOQ15233 471 aaKnown RBP eCLIP13.76□□□□□ -0.212e-8■□□□□ 11
CHMP3-201ENST00000263856 GLIS3Q8NEA6 775 aa13.76□□□□□ -0.21
CHMP3-201ENST00000263856 SPATA4Q8NEY3 305 aa13.76□□□□□ -0.21
CHMP3-201ENST00000263856 TRIM58Q8NG06 486 aa13.76□□□□□ -0.21
CHMP3-201ENST00000263856 TBCKQ8TEA7 893 aa13.76□□□□□ -0.21
CHMP3-201ENST00000263856 OSBPL9Q96SU4 736 aa13.76□□□□□ -0.21
CHMP3-201ENST00000263856 SEC63Q9UGP8 760 aaKnown RBP13.76□□□□□ -0.21
CHMP3-201ENST00000263856 SNX12Q9UMY4 172 aa13.76□□□□□ -0.21
CHMP3-201ENST00000263856 ZNF804BA4D1E1 1349 aa13.76□□□□□ -0.21
CHMP3-201ENST00000263856 SHANK3Q9BYB0 1731 aa13.76□□□□□ -0.21
CHMP3-201ENST00000263856 AGPSO00116 658 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms