RNA–Protein interactions for RNA: ENST00000222402.7

UBE2D4-201, Transcript of ubiquitin conjugating enzyme E2 D4 (putative), humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBE2D4, Length 3,974 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4-201ENST00000222402 BBOX1O75936 387 aa16.63■□□□□ 0.25
UBE2D4-201ENST00000222402 H2AFXP16104 143 aaPredicted RBP16.63■□□□□ 0.25
UBE2D4-201ENST00000222402 RAPGEF1Q13905 1077 aa16.63■□□□□ 0.25
UBE2D4-201ENST00000222402 TRMT1LQ7Z2T5 733 aaKnown RBP16.63■□□□□ 0.25
UBE2D4-201ENST00000222402 SH3RF1Q7Z6J0 888 aa16.63■□□□□ 0.25
UBE2D4-201ENST00000222402 PDE11AQ9HCR9 933 aa16.63■□□□□ 0.25
UBE2D4-201ENST00000222402 TMOD2Q9NZR1 351 aa16.63■□□□□ 0.25
UBE2D4-201ENST00000222402 ASPRV1Q53RT3 343 aa16.62■□□□□ 0.25
UBE2D4-201ENST00000222402 MYOCDQ8IZQ8 938 aa16.62■□□□□ 0.25
UBE2D4-201ENST00000222402 ZNF384Q8TF68 577 aa16.62■□□□□ 0.25
UBE2D4-201ENST00000222402 CTDP1Q9Y5B0 961 aaPredicted RBP16.62■□□□□ 0.25
UBE2D4-201ENST00000222402 USH1GQ495M9 461 aa16.62■□□□□ 0.25
UBE2D4-201ENST00000222402 KIAA0825Q8IV33 1275 aa16.62■□□□□ 0.25
UBE2D4-201ENST00000222402 TSGA10Q9BZW7 698 aa16.62■□□□□ 0.25
UBE2D4-201ENST00000222402 TRIM9Q9C026 710 aa16.62■□□□□ 0.25
UBE2D4-201ENST00000222402 TBCAO75347 108 aaKnown RBP16.62■□□□□ 0.25
UBE2D4-201ENST00000222402 STK4Q13043 487 aa16.62■□□□□ 0.25
UBE2D4-201ENST00000222402 CCDC93Q567U6 631 aa16.62■□□□□ 0.25
UBE2D4-201ENST00000222402 TRIM10Q9UDY6 481 aa16.62■□□□□ 0.25
UBE2D4-201ENST00000222402 LAMA4Q16363 1823 aa16.62■□□□□ 0.25
UBE2D4-201ENST00000222402 ZBED6P86452 979 aa16.62■□□□□ 0.25
UBE2D4-201ENST00000222402 CACNB1Q02641 598 aaPredicted RBP16.62■□□□□ 0.25
UBE2D4-201ENST00000222402 TEKT1Q969V4 418 aa16.62■□□□□ 0.25
UBE2D4-201ENST00000222402 DNAJC5Q9H3Z4 198 aa16.62■□□□□ 0.25
UBE2D4-201ENST00000222402 NHEJ1Q9H9Q4 299 aaPredicted RBP16.62■□□□□ 0.25
UBE2D4-201ENST00000222402 TDP2O95551 362 aa16.61■□□□□ 0.25
UBE2D4-201ENST00000222402 TTLL1O95922 423 aa16.61■□□□□ 0.25
UBE2D4-201ENST00000222402 KCNB1Q14721 858 aa16.61■□□□□ 0.25
UBE2D4-201ENST00000222402 PRR5LQ6MZQ0 368 aa16.61■□□□□ 0.25
UBE2D4-201ENST00000222402 SPZ1Q9BXG8 430 aa16.61■□□□□ 0.25
UBE2D4-201ENST00000222402 CENPHQ9H3R5 247 aa16.61■□□□□ 0.25
UBE2D4-201ENST00000222402 FLT1P17948 1338 aa16.61■□□□□ 0.25
UBE2D4-201ENST00000222402 ATP8B1O43520 1251 aa16.61■□□□□ 0.25
UBE2D4-201ENST00000222402 ZMYND10O75800 440 aa16.61■□□□□ 0.25
UBE2D4-201ENST00000222402 NT5C2P49902 561 aa16.61■□□□□ 0.25
UBE2D4-201ENST00000222402 GRIK5Q16478 980 aa16.61■□□□□ 0.25
UBE2D4-201ENST00000222402 FAM26FQ5R3K3 315 aa16.61■□□□□ 0.25
UBE2D4-201ENST00000222402 ANKRD40Q6AI12 368 aa16.61■□□□□ 0.25
UBE2D4-201ENST00000222402 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.61■□□□□ 0.25
UBE2D4-201ENST00000222402 ITIH6Q6UXX5 1313 aa16.61■□□□□ 0.25
UBE2D4-201ENST00000222402 ERVK-24P63145 666 aa16.61■□□□□ 0.25
UBE2D4-201ENST00000222402 PPP1R12BO60237 982 aaPredicted RBP16.6■□□□□ 0.25
UBE2D4-201ENST00000222402 SRGAP2O75044 1071 aa16.6■□□□□ 0.25
UBE2D4-201ENST00000222402 GYS2P54840 703 aa16.6■□□□□ 0.25
UBE2D4-201ENST00000222402 E2F4Q16254 413 aa16.6■□□□□ 0.25
UBE2D4-201ENST00000222402 TMEM139Q8IV31 216 aa16.6■□□□□ 0.25
UBE2D4-201ENST00000222402 SPATA20Q8TB22 786 aa16.6■□□□□ 0.25
UBE2D4-201ENST00000222402 HDAC6Q9UBN7 1215 aa16.6■□□□□ 0.25
UBE2D4-201ENST00000222402 A0A0U1RQJ8 604 aa16.6■□□□□ 0.25
UBE2D4-201ENST00000222402 TMCO5BA8MYB1 307 aa16.6■□□□□ 0.25
UBE2D4-201ENST00000222402 DCAF17Q5H9S7 520 aaPredicted RBP16.6■□□□□ 0.25
UBE2D4-201ENST00000222402 GPBP1Q86WP2 473 aa16.6■□□□□ 0.25
UBE2D4-201ENST00000222402 RETREG2Q8NC44 543 aa16.6■□□□□ 0.25
UBE2D4-201ENST00000222402 ATRIPQ8WXE1 791 aa16.6■□□□□ 0.25
UBE2D4-201ENST00000222402 ABCB6Q9NP58 842 aa16.6■□□□□ 0.25
UBE2D4-201ENST00000222402 AGPAT5Q9NUQ2 364 aa16.6■□□□□ 0.25
UBE2D4-201ENST00000222402 PANK4Q9NVE7 773 aa16.6■□□□□ 0.25
UBE2D4-201ENST00000222402 KIAA1024Q9UPX6 916 aa16.6■□□□□ 0.25
UBE2D4-201ENST00000222402 RHOBTB3O94955 611 aa16.6■□□□□ 0.25
UBE2D4-201ENST00000222402 SMCR8Q8TEV9 937 aaPredicted RBP16.6■□□□□ 0.25
UBE2D4-201ENST00000222402 STK17AQ9UEE5 414 aa16.6■□□□□ 0.25
UBE2D4-201ENST00000222402 TFR2Q9UP52 801 aa16.6■□□□□ 0.25
UBE2D4-201ENST00000222402 PCDHA1Q9Y5I3 950 aa16.6■□□□□ 0.25
UBE2D4-201ENST00000222402 PPEF1O14829 653 aaPredicted RBP16.59■□□□□ 0.25
UBE2D4-201ENST00000222402 CYTH3O43739 400 aa16.59■□□□□ 0.25
UBE2D4-201ENST00000222402 AKR1B1P15121 316 aa16.59■□□□□ 0.25
UBE2D4-201ENST00000222402 RNASE9P60153 205 aaKnown RBP16.59■□□□□ 0.25
UBE2D4-201ENST00000222402 MED15Q96RN5 788 aa16.59■□□□□ 0.25
UBE2D4-201ENST00000222402 NDST4Q9H3R1 872 aa16.59■□□□□ 0.25
UBE2D4-201ENST00000222402 PALM3A6NDB9 673 aaPredicted RBP16.59■□□□□ 0.25
UBE2D4-201ENST00000222402 PRPHP41219 470 aa16.59■□□□□ 0.25
UBE2D4-201ENST00000222402 IL17AQ16552 155 aa16.59■□□□□ 0.25
UBE2D4-201ENST00000222402 VPS36Q86VN1 386 aa16.59■□□□□ 0.25
UBE2D4-201ENST00000222402 ZMYND12Q9H0C1 365 aa16.59■□□□□ 0.25
UBE2D4-201ENST00000222402 CETN3O15182 167 aa16.59■□□□□ 0.25
UBE2D4-201ENST00000222402 SLC9C1Q4G0N8 1177 aa16.59■□□□□ 0.25
UBE2D4-201ENST00000222402 TNFRSF25Q93038 417 aa16.59■□□□□ 0.25
UBE2D4-201ENST00000222402 NT5C3AQ9H0P0 336 aa16.59■□□□□ 0.25
UBE2D4-201ENST00000222402 PMS1P54277 932 aaKnown RBP16.58■□□□□ 0.25
UBE2D4-201ENST00000222402 CACNB3P54284 484 aa16.58■□□□□ 0.25
UBE2D4-201ENST00000222402 PPP4CP60510 307 aa16.58■□□□□ 0.25
UBE2D4-201ENST00000222402 VPS72Q15906 364 aa16.58■□□□□ 0.25
UBE2D4-201ENST00000222402 PRR16Q569H4 304 aa16.58■□□□□ 0.25
UBE2D4-201ENST00000222402 GIMAP8Q8ND71 665 aaPredicted RBP16.58■□□□□ 0.25
UBE2D4-201ENST00000222402 DDX12PQ92771 950 aa16.58■□□□□ 0.25
UBE2D4-201ENST00000222402 SHISA4Q96DD7 197 aa16.58■□□□□ 0.25
UBE2D4-201ENST00000222402 DISP2A7MBM2 1401 aa16.58■□□□□ 0.25
UBE2D4-201ENST00000222402 FAM196BA6NMK8 535 aa16.58■□□□□ 0.24
UBE2D4-201ENST00000222402 MAN2A1Q16706 1144 aa16.58■□□□□ 0.24
UBE2D4-201ENST00000222402 C16orf86Q6ZW13 317 aa16.58■□□□□ 0.24
UBE2D4-201ENST00000222402 TRIM58Q8NG06 486 aa16.58■□□□□ 0.24
UBE2D4-201ENST00000222402 ZNF446Q9NWS9 450 aa16.58■□□□□ 0.24
UBE2D4-201ENST00000222402 NID2Q14112 1375 aa16.58■□□□□ 0.24
UBE2D4-201ENST00000222402 BUB1O43683 1085 aa16.58■□□□□ 0.24
UBE2D4-201ENST00000222402 HLTFQ14527 1009 aaKnown RBP eCLIP16.58■□□□□ 0.24
UBE2D4-201ENST00000222402 GPATCH4Q5T3I0 446 aaKnown RBP16.58■□□□□ 0.24
UBE2D4-201ENST00000222402 FHOD1Q9Y613 1164 aa16.58■□□□□ 0.24
UBE2D4-201ENST00000222402 TJP1Q07157 1748 aa16.57■□□□□ 0.24
UBE2D4-201ENST00000222402 A0A1W2PQC6 194 aa16.57■□□□□ 0.24
UBE2D4-201ENST00000222402 FGRP09769 529 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms