RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W PRD1P25375 712 aa3.34□□□□□ -1.87
UPF3YGR072W WBP1P33767 430 aaKnown RBP3.34□□□□□ -1.87
UPF3YGR072W YKL100CP34248 587 aa3.34□□□□□ -1.87
UPF3YGR072W MIA40P36046 403 aa3.34□□□□□ -1.87
UPF3YGR072W RPL32P38061 130 aaKnown RBP3.34□□□□□ -1.87
UPF3YGR072W CIN4P39110 191 aa3.34□□□□□ -1.87
UPF3YGR072W YJL068CP40363 299 aa3.34□□□□□ -1.87
UPF3YGR072W TES1P41903 349 aaKnown RBP3.34□□□□□ -1.87
UPF3YGR072W APT1P49435 187 aaKnown RBP3.34□□□□□ -1.87
UPF3YGR072W RSC1P53236 928 aa3.34□□□□□ -1.87
UPF3YGR072W VPS9P54787 451 aa3.34□□□□□ -1.87
UPF3YGR072W VTC3Q02725 835 aa3.34□□□□□ -1.87
UPF3YGR072W RMT2Q03305 412 aa3.34□□□□□ -1.87
UPF3YGR072W RCF1Q03713 159 aa3.34□□□□□ -1.87
UPF3YGR072W MRD1Q06106 887 aaKnown RBP3.34□□□□□ -1.87
UPF3YGR072W VTA1Q06263 330 aa3.34□□□□□ -1.87
UPF3YGR072W NRT1Q08485 598 aa3.34□□□□□ -1.87
UPF3YGR072W RLM1Q12224 676 aa3.34□□□□□ -1.87
UPF3YGR072W YML133CQ03099 1374 aa3.34□□□□□ -1.88
UPF3YGR072W YLL067CQ07888 1374 aa3.34□□□□□ -1.88
UPF3YGR072W YLL066CQ99208 1374 aa3.34□□□□□ -1.88
UPF3YGR072W SGS1P35187 1447 aa3.34□□□□□ -1.88
UPF3YGR072W MRP13P12686 339 aa3.33□□□□□ -1.88
UPF3YGR072W KGD1P20967 1014 aaKnown RBP3.33□□□□□ -1.88
UPF3YGR072W CLB2P24869 491 aa3.33□□□□□ -1.88
UPF3YGR072W GAC1P28006 793 aa3.33□□□□□ -1.88
UPF3YGR072W PMT1P33775 817 aa3.33□□□□□ -1.88
UPF3YGR072W TIF3P34167 436 aaKnown RBP3.33□□□□□ -1.88
UPF3YGR072W NUP133P36161 1157 aa3.33□□□□□ -1.88
UPF3YGR072W STV1P37296 890 aa3.33□□□□□ -1.88
UPF3YGR072W ARC40P38328 384 aaKnown RBP3.33□□□□□ -1.88
UPF3YGR072W MSR1P38714 643 aa3.33□□□□□ -1.88
UPF3YGR072W TOM71P38825 639 aaKnown RBP3.33□□□□□ -1.88
UPF3YGR072W HOS2P53096 452 aaPredicted RBP3.33□□□□□ -1.88
UPF3YGR072W MNP1P53163 194 aaPredicted RBP3.33□□□□□ -1.88
UPF3YGR072W ARP10Q04549 284 aa3.33□□□□□ -1.88
UPF3YGR072W ECM22Q05958 814 aaPredicted RBP3.33□□□□□ -1.88
UPF3YGR072W YER145C-AA0A023PYF4 145 aa3.32□□□□□ -1.88
UPF3YGR072W YCR051WP25631 222 aa3.32□□□□□ -1.88
UPF3YGR072W SEC66P33754 206 aa3.32□□□□□ -1.88
UPF3YGR072W SAS3P34218 831 aa3.32□□□□□ -1.88
UPF3YGR072W SCO2P38072 301 aa3.32□□□□□ -1.88
UPF3YGR072W ALK1P43633 760 aaKnown RBP3.32□□□□□ -1.88
UPF3YGR072W DLD2P46681 530 aaKnown RBP3.32□□□□□ -1.88
UPF3YGR072W YGL260WP53056 76 aa3.32□□□□□ -1.88
UPF3YGR072W YGR126WP53274 230 aa3.32□□□□□ -1.88
UPF3YGR072W YTP1P53584 459 aa3.32□□□□□ -1.88
UPF3YGR072W MDG1P53885 366 aa3.32□□□□□ -1.88
UPF3YGR072W YNL144CP53907 740 aa3.32□□□□□ -1.88
UPF3YGR072W RSM23Q01163 450 aa3.32□□□□□ -1.88
UPF3YGR072W CIK1Q01649 594 aa3.32□□□□□ -1.88
UPF3YGR072W TOF2Q02208 771 aa3.32□□□□□ -1.88
UPF3YGR072W YMR034CQ05131 434 aaPredicted RBP3.32□□□□□ -1.88
UPF3YGR072W ATG26Q06321 1198 aa3.32□□□□□ -1.88
UPF3YGR072W MCP2Q06567 569 aa3.32□□□□□ -1.88
UPF3YGR072W MLH2Q07980 695 aa3.32□□□□□ -1.88
UPF3YGR072W PFA4Q12006 378 aa3.32□□□□□ -1.88
UPF3YGR072W RRI1Q12468 440 aa3.32□□□□□ -1.88
UPF3YGR072W BRR1Q99177 341 aaPredicted RBP3.32□□□□□ -1.88
UPF3YGR072W YRF1-4O13559 1382 aa3.31□□□□□ -1.88
UPF3YGR072W HSP82P02829 709 aaKnown RBP3.31□□□□□ -1.88
UPF3YGR072W PUT2P07275 575 aa3.31□□□□□ -1.88
UPF3YGR072W ADK2P26364 225 aa3.31□□□□□ -1.88
UPF3YGR072W SWI3P32591 825 aa3.31□□□□□ -1.88
UPF3YGR072W HCS1P34243 683 aa3.31□□□□□ -1.88
UPF3YGR072W APE3P37302 537 aaKnown RBP3.31□□□□□ -1.88
UPF3YGR072W ANS1P38832 159 aa3.31□□□□□ -1.88
UPF3YGR072W VRG4P40107 337 aa3.31□□□□□ -1.88
UPF3YGR072W VPS25P47142 202 aa3.31□□□□□ -1.88
UPF3YGR072W YGR250CP53316 781 aaKnown RBP3.31□□□□□ -1.88
UPF3YGR072W ASI1P54074 624 aa3.31□□□□□ -1.88
UPF3YGR072W ERO1Q03103 563 aa3.31□□□□□ -1.88
UPF3YGR072W YDR131CQ03899 556 aa3.31□□□□□ -1.88
UPF3YGR072W PDS5Q04264 1277 aa3.31□□□□□ -1.88
UPF3YGR072W POS5Q06892 414 aa3.31□□□□□ -1.88
UPF3YGR072W FRE3Q08905 711 aa3.31□□□□□ -1.88
UPF3YGR072W YDL007C-AQ2V2Q0 85 aa3.31□□□□□ -1.88
UPF3YGR072W YOL159C-AQ3E769 90 aa3.31□□□□□ -1.88
UPF3YGR072W PMS1P14242 873 aa3.3□□□□□ -1.88
UPF3YGR072W CNA1P23287 553 aa3.3□□□□□ -1.88
UPF3YGR072W YKL023WP36103 277 aaKnown RBP3.3□□□□□ -1.88
UPF3YGR072W ROT2P38138 954 aa3.3□□□□□ -1.88
UPF3YGR072W LRP1P38801 184 aaKnown RBP3.3□□□□□ -1.88
UPF3YGR072W RTT107P38850 1070 aa3.3□□□□□ -1.88
UPF3YGR072W MET30P39014 640 aa3.3□□□□□ -1.88
UPF3YGR072W ART5P53244 586 aaKnown RBP3.3□□□□□ -1.88
UPF3YGR072W CAF130P53280 1122 aaPredicted RBP3.3□□□□□ -1.88
UPF3YGR072W DUG3P53871 357 aa3.3□□□□□ -1.88
UPF3YGR072W CTL1Q03220 320 aaKnown RBP3.3□□□□□ -1.88
UPF3YGR072W YOL159CQ08300 171 aa3.3□□□□□ -1.88
UPF3YGR072W SNU66Q12420 587 aaPredicted RBP3.3□□□□□ -1.88
UPF3YGR072W RPL31BP0C2H9 113 aaKnown RBP3.29□□□□□ -1.88
UPF3YGR072W SNF3P10870 884 aa3.29□□□□□ -1.88
UPF3YGR072W RPL3P14126 387 aaKnown RBP3.29□□□□□ -1.88
UPF3YGR072W RAD14P28519 371 aa3.29□□□□□ -1.88
UPF3YGR072W TFB1P32776 642 aa3.29□□□□□ -1.88
UPF3YGR072W SHP1P34223 423 aa3.29□□□□□ -1.88
UPF3YGR072W MTR2P34232 184 aaKnown RBP3.29□□□□□ -1.88
UPF3YGR072W STB6P36085 766 aa3.29□□□□□ -1.88
UPF3YGR072W NTC20P38302 140 aaPredicted RBP3.29□□□□□ -1.88
Retrieved 100 of 5,963 RNA–protein pairs in 9.4 ms