RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	YDR239C	Q03780	787 aa		4.93	□□□□□ -1.62
CAF16	YFL028C	YOL159C	Q08300	171 aa		4.93	□□□□□ -1.62
CAF16	YFL028C	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	4.93	□□□□□ -1.62	not detected
CAF16	YFL028C	YOL159C-A	Q3E769	90 aa		4.93	□□□□□ -1.62
CAF16	YFL028C	MF(ALPHA)1	P01149	165 aa		4.92	□□□□□ -1.62
CAF16	YFL028C	MRP2	P10663	115 aa	Predicted RBP	4.92	□□□□□ -1.62
CAF16	YFL028C	KGD1	P20967	1014 aa	Known RBP	4.92	□□□□□ -1.62
CAF16	YFL028C	SEF1	P34228	1148 aa		4.92	□□□□□ -1.62
CAF16	YFL028C	FTH1	P38310	465 aa		4.92	□□□□□ -1.62
CAF16	YFL028C	SMF1	P38925	575 aa		4.92	□□□□□ -1.62
CAF16	YFL028C	YIL166C	P40445	542 aa		4.92	□□□□□ -1.62
CAF16	YFL028C	PKP1	P40530	394 aa		4.92	□□□□□ -1.62
CAF16	YFL028C	ROK1	P45818	564 aa	Predicted RBP	4.92	□□□□□ -1.62
CAF16	YFL028C	NNF2	P53253	936 aa		4.92	□□□□□ -1.62
CAF16	YFL028C	IPI3	P53877	555 aa		4.92	□□□□□ -1.62
CAF16	YFL028C	YNL058C	P53947	316 aa		4.92	□□□□□ -1.62
CAF16	YFL028C	APM1	Q00776	475 aa	Predicted RBP	4.92	□□□□□ -1.62
CAF16	YFL028C	DPB4	Q04603	196 aa	Known RBP	4.92	□□□□□ -1.62
CAF16	YFL028C	SUT2	Q12286	268 aa		4.92	□□□□□ -1.62
CAF16	YFL028C	SMC6	Q12749	1114 aa		4.92	□□□□□ -1.62
CAF16	YFL028C	SAS3	P34218	831 aa		4.91	□□□□□ -1.62
CAF16	YFL028C	SNU114	P36048	1008 aa	Known RBP	4.91	□□□□□ -1.62
CAF16	YFL028C	CST26	P38226	397 aa		4.91	□□□□□ -1.62
CAF16	YFL028C	VID24	P38263	362 aa		4.91	□□□□□ -1.62
CAF16	YFL028C	IMD2	P38697	523 aa	Known RBP	4.91	□□□□□ -1.62
CAF16	YFL028C	ALG5	P40350	334 aa		4.91	□□□□□ -1.62
CAF16	YFL028C	IMD4	P50094	524 aa	Known RBP	4.91	□□□□□ -1.62
CAF16	YFL028C	IMD3	P50095	523 aa	Known RBP	4.91	□□□□□ -1.62
CAF16	YFL028C	JJJ1	P53863	590 aa		4.91	□□□□□ -1.62
CAF16	YFL028C	UBX2	Q04228	584 aa		4.91	□□□□□ -1.62
CAF16	YFL028C	RPC11	Q04307	110 aa	Predicted RBP	4.91	□□□□□ -1.62
CAF16	YFL028C	YLR049C	Q12110	428 aa		4.91	□□□□□ -1.62
CAF16	YFL028C	AVL9	Q12500	764 aa		4.91	□□□□□ -1.62
CAF16	YFL028C	POM152	P39685	1337 aa		4.91	□□□□□ -1.62
CAF16	YFL028C	MSS51	P32335	436 aa		4.9	□□□□□ -1.63
CAF16	YFL028C	SSE2	P32590	693 aa	Known RBP	4.9	□□□□□ -1.63
CAF16	YFL028C	PEX5	P35056	612 aa		4.9	□□□□□ -1.63
CAF16	YFL028C	TCD2	P36101	447 aa	Known RBP	4.9	□□□□□ -1.63
CAF16	YFL028C	ELO1	P39540	310 aa		4.9	□□□□□ -1.63
CAF16	YFL028C	ERV46	P39727	415 aa		4.9	□□□□□ -1.63
CAF16	YFL028C	STU2	P46675	888 aa		4.9	□□□□□ -1.63
CAF16	YFL028C	PET130	P47065	347 aa		4.9	□□□□□ -1.63
CAF16	YFL028C	EFM6	P53970	246 aa		4.9	□□□□□ -1.63
CAF16	YFL028C	IRC4	Q03036	179 aa		4.9	□□□□□ -1.63
CAF16	YFL028C	YLR352W	Q06479	807 aa		4.9	□□□□□ -1.63
CAF16	YFL028C	LEU9	Q12166	604 aa	Known RBP	4.9	□□□□□ -1.63
CAF16	YFL028C	RLM1	Q12224	676 aa		4.9	□□□□□ -1.63
CAF16	YFL028C	RDL1	Q12305	139 aa	Known RBP	4.9	□□□□□ -1.63
CAF16	YFL028C	ISA2	Q12425	185 aa		4.9	□□□□□ -1.63
CAF16	YFL028C	CHO1	P08456	276 aa		4.89	□□□□□ -1.63
CAF16	YFL028C	RAP1	P11938	827 aa		4.89	□□□□□ -1.63
CAF16	YFL028C	MRP13	P12686	339 aa		4.89	□□□□□ -1.63
CAF16	YFL028C	PDA1	P16387	420 aa	Known RBP	4.89	□□□□□ -1.63
CAF16	YFL028C	CLB3	P24870	427 aa		4.89	□□□□□ -1.63
CAF16	YFL028C	YCR006C	P25350	157 aa		4.89	□□□□□ -1.63
CAF16	YFL028C	IMG1	P25626	169 aa		4.89	□□□□□ -1.63
CAF16	YFL028C	GSY2	P27472	705 aa		4.89	□□□□□ -1.63
CAF16	YFL028C	TIF3	P34167	436 aa	Known RBP	4.89	□□□□□ -1.63
CAF16	YFL028C	YBR144C	P34215	104 aa		4.89	□□□□□ -1.63
CAF16	YFL028C	PAC2	P39937	518 aa		4.89	□□□□□ -1.63
CAF16	YFL028C	LTP1	P40347	161 aa		4.89	□□□□□ -1.63
CAF16	YFL028C	PTR3	P43606	678 aa		4.89	□□□□□ -1.63
CAF16	YFL028C	FAR3	P46671	204 aa		4.89	□□□□□ -1.63
CAF16	YFL028C	SNU56	Q03782	492 aa	Known RBP	4.89	□□□□□ -1.63
CAF16	YFL028C	SXM1	Q04175	944 aa	Known RBP	4.89	□□□□□ -1.63
CAF16	YFL028C	MRD1	Q06106	887 aa	Known RBP	4.89	□□□□□ -1.63
CAF16	YFL028C	ATG29	Q12092	213 aa		4.89	□□□□□ -1.63
CAF16	YFL028C	NCB2	Q92317	146 aa		4.89	□□□□□ -1.63
CAF16	YFL028C	FLO11	P08640	1367 aa		4.89	□□□□□ -1.63
CAF16	YFL028C	YER145C-A	A0A023PYF4	145 aa		4.88	□□□□□ -1.63
CAF16	YFL028C	MAK32	P23060	363 aa		4.88	□□□□□ -1.63
CAF16	YFL028C	SYN8	P31377	255 aa		4.88	□□□□□ -1.63
CAF16	YFL028C	WBP1	P33767	430 aa	Known RBP	4.88	□□□□□ -1.63
CAF16	YFL028C	RFC1	P38630	861 aa	Known RBP	4.88	□□□□□ -1.63
CAF16	YFL028C	YJL068C	P40363	299 aa		4.88	□□□□□ -1.63
CAF16	YFL028C	CDC1	P40986	491 aa		4.88	□□□□□ -1.63
CAF16	YFL028C	SSU1	P41930	458 aa		4.88	□□□□□ -1.63
CAF16	YFL028C	HOS2	P53096	452 aa	Predicted RBP	4.88	□□□□□ -1.63
CAF16	YFL028C	YGR127W	P53275	312 aa		4.88	□□□□□ -1.63
CAF16	YFL028C	YDR131C	Q03899	556 aa		4.88	□□□□□ -1.63
CAF16	YFL028C	YLR455W	Q06188	304 aa		4.88	□□□□□ -1.63
CAF16	YFL028C	TEN1	Q07921	160 aa		4.88	□□□□□ -1.63
CAF16	YFL028C	SLK19	Q08581	821 aa	Known RBP	4.88	□□□□□ -1.63
CAF16	YFL028C	APL4	Q12028	832 aa		4.88	□□□□□ -1.63
CAF16	YFL028C	YLR278C	Q05854	1341 aa		4.88	□□□□□ -1.63
CAF16	YFL028C	TOM1	Q03280	3268 aa		4.87	□□□□□ -1.63
CAF16	YFL028C	TKL1	P23254	680 aa	Known RBP	4.87	□□□□□ -1.63
CAF16	YFL028C	PUP3	P25451	205 aa	Known RBP	4.87	□□□□□ -1.63
CAF16	YFL028C	ADY2	P25613	283 aa		4.87	□□□□□ -1.63
CAF16	YFL028C	SWI3	P32591	825 aa		4.87	□□□□□ -1.63
CAF16	YFL028C	PMT1	P33775	817 aa		4.87	□□□□□ -1.63
CAF16	YFL028C	STV1	P37296	890 aa		4.87	□□□□□ -1.63
CAF16	YFL028C	APD1	P38281	316 aa		4.87	□□□□□ -1.63
CAF16	YFL028C	ICS2	P38284	255 aa		4.87	□□□□□ -1.63
CAF16	YFL028C	CIN1	P40987	1014 aa		4.87	□□□□□ -1.63
CAF16	YFL028C	TAX4	P47030	604 aa		4.87	□□□□□ -1.63
CAF16	YFL028C	SMC3	P47037	1230 aa		4.87	□□□□□ -1.63
CAF16	YFL028C	ORC5	P50874	479 aa		4.87	□□□□□ -1.63
CAF16	YFL028C	YML6	P51998	286 aa		4.87	□□□□□ -1.63
CAF16	YFL028C	YGL242C	P53066	181 aa		4.87	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 20.3 ms