RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C MSO1P53604 210 aaKnown RBP2.04□□□□□ -2.08
PCF11YDR228C EFM6P53970 246 aa2.04□□□□□ -2.08
PCF11YDR228C RLI1Q03195 608 aaKnown RBP2.04□□□□□ -2.08
PCF11YDR228C GLO2Q05584 274 aa2.04□□□□□ -2.08
PCF11YDR228C ECM30Q06673 1274 aa2.04□□□□□ -2.08
PCF11YDR228C TEN1Q07921 160 aa2.04□□□□□ -2.08
PCF11YDR228C SDH5Q08230 162 aa2.04□□□□□ -2.08
PCF11YDR228C HNT3Q08702 217 aa2.04□□□□□ -2.08
PCF11YDR228C YER078W-AQ3E7A2 54 aa2.04□□□□□ -2.08
PCF11YDR228C PEP5P12868 1029 aa2.03□□□□□ -2.08
PCF11YDR228C PUP3P25451 205 aaKnown RBP2.03□□□□□ -2.08
PCF11YDR228C NUP133P36161 1157 aa2.03□□□□□ -2.08
PCF11YDR228C RRT2P38332 387 aa2.03□□□□□ -2.08
PCF11YDR228C PRE5P40302 234 aaKnown RBP2.03□□□□□ -2.08
PCF11YDR228C YJR154WP47181 346 aa2.03□□□□□ -2.08
PCF11YDR228C APT1P49435 187 aaKnown RBP2.03□□□□□ -2.08
PCF11YDR228C RIX7Q07844 837 aaKnown RBP2.03□□□□□ -2.08
PCF11YDR228C SUC2P00724 532 aa2.03□□□□□ -2.09
PCF11YDR228C KGD1P20967 1014 aaKnown RBP2.03□□□□□ -2.09
PCF11YDR228C PTH2P34222 208 aa2.03□□□□□ -2.09
PCF11YDR228C TUL1P36096 758 aa2.03□□□□□ -2.09
PCF11YDR228C AXL2P38928 823 aa2.03□□□□□ -2.09
PCF11YDR228C LYS4P49367 693 aaPredicted RBP2.03□□□□□ -2.09
PCF11YDR228C SNO4Q04902 237 aa2.03□□□□□ -2.09
PCF11YDR228C YOR365CQ08844 703 aa2.03□□□□□ -2.09
PCF11YDR228C HSP33Q08914 237 aaKnown RBP2.03□□□□□ -2.09
PCF11YDR228C HSP32Q08992 237 aa2.03□□□□□ -2.09
PCF11YDR228C SSM4P40318 1319 aa2.02□□□□□ -2.09
PCF11YDR228C VMA16P23968 213 aa2.02□□□□□ -2.09
PCF11YDR228C HXT1P32465 570 aa2.02□□□□□ -2.09
PCF11YDR228C YBL055CP34220 418 aaPredicted RBP2.02□□□□□ -2.09
PCF11YDR228C NPR2P39923 615 aa2.02□□□□□ -2.09
PCF11YDR228C HAT2P39984 401 aa2.02□□□□□ -2.09
PCF11YDR228C BUD32P53323 261 aa2.02□□□□□ -2.09
PCF11YDR228C GTR1Q00582 310 aa2.02□□□□□ -2.09
PCF11YDR228C SHR3Q02774 210 aa2.02□□□□□ -2.09
PCF11YDR228C SLD5Q03406 294 aa2.02□□□□□ -2.09
PCF11YDR228C CTF3Q12748 733 aa2.02□□□□□ -2.09
PCF11YDR228C YCR007CP25354 239 aa2.01□□□□□ -2.09
PCF11YDR228C PUT3P25502 979 aaPredicted RBP2.01□□□□□ -2.09
PCF11YDR228C RFS1P38234 210 aaKnown RBP2.01□□□□□ -2.09
PCF11YDR228C YHR210CP38893 341 aa2.01□□□□□ -2.09
PCF11YDR228C SHO1P40073 367 aa2.01□□□□□ -2.09
PCF11YDR228C SCD6P45978 349 aaKnown RBP RIP-Chip data2.01□□□□□ -2.09not detected
PCF11YDR228C YGR021WP53212 290 aa2.01□□□□□ -2.09
PCF11YDR228C BTN2P53286 410 aa2.01□□□□□ -2.09
PCF11YDR228C MRPL51Q06090 140 aaPredicted RBP2.01□□□□□ -2.09
PCF11YDR228C NBP2Q12163 236 aa2.01□□□□□ -2.09
PCF11YDR228C CAR1P00812 333 aaKnown RBP2.01□□□□□ -2.09
PCF11YDR228C LPD1P09624 499 aaKnown RBP2.01□□□□□ -2.09
PCF11YDR228C BOS1P25385 244 aa2.01□□□□□ -2.09
PCF11YDR228C YKL023WP36103 277 aaKnown RBP2.01□□□□□ -2.09
PCF11YDR228C KTR3P38130 404 aaPredicted RBP2.01□□□□□ -2.09
PCF11YDR228C FAR3P46671 204 aa2.01□□□□□ -2.09
PCF11YDR228C ARC1P46672 376 aaKnown RBP2.01□□□□□ -2.09
PCF11YDR228C SNG1P46950 547 aa2.01□□□□□ -2.09
PCF11YDR228C DSD1P53095 428 aa2.01□□□□□ -2.09
PCF11YDR228C DPB4Q04603 196 aaKnown RBP2.01□□□□□ -2.09
PCF11YDR228C RRP12Q12754 1228 aaKnown RBP2.01□□□□□ -2.09
PCF11YDR228C SPT15P13393 240 aaKnown RBP2□□□□□ -2.09
PCF11YDR228C SGF29P25554 259 aa2□□□□□ -2.09
PCF11YDR228C YIM1P28625 365 aa2□□□□□ -2.09
PCF11YDR228C YEL045CP32616 141 aa2□□□□□ -2.09
PCF11YDR228C ALG8P40351 577 aa2□□□□□ -2.09
PCF11YDR228C YGR127WP53275 312 aa2□□□□□ -2.09
PCF11YDR228C HEL2Q05580 639 aaKnown RBP2□□□□□ -2.09
PCF11YDR228C ENT4Q07872 247 aa2□□□□□ -2.09
PCF11YDR228C ERV2Q12284 196 aa2□□□□□ -2.09
PCF11YDR228C FUN19P28003 413 aaPredicted RBP1.99□□□□□ -2.09
PCF11YDR228C UTR4P32626 227 aa1.99□□□□□ -2.09
PCF11YDR228C FRE1P32791 686 aa1.99□□□□□ -2.09
PCF11YDR228C SLC1P33333 303 aa1.99□□□□□ -2.09
PCF11YDR228C WSC2P53832 503 aa1.99□□□□□ -2.09
PCF11YDR228C DUG3P53871 357 aa1.99□□□□□ -2.09
PCF11YDR228C VPS74Q06385 345 aa1.99□□□□□ -2.09
PCF11YDR228C RAD52P06778 471 aaKnown RBP1.99□□□□□ -2.09
PCF11YDR228C PEP4P07267 405 aaKnown RBP1.99□□□□□ -2.09
PCF11YDR228C IMG1P25626 169 aa1.99□□□□□ -2.09
PCF11YDR228C SSE2P32590 693 aaKnown RBP1.99□□□□□ -2.09
PCF11YDR228C SPR1P32603 445 aa1.99□□□□□ -2.09
PCF11YDR228C RPL32P38061 130 aaKnown RBP1.99□□□□□ -2.09
PCF11YDR228C MTC6P38849 526 aa1.99□□□□□ -2.09
PCF11YDR228C PTH1P38876 190 aaKnown RBP1.99□□□□□ -2.09
PCF11YDR228C KAP123P40069 1113 aaKnown RBP1.99□□□□□ -2.09
PCF11YDR228C PTR3P43606 678 aa1.99□□□□□ -2.09
PCF11YDR228C YOR387CQ08910 206 aa1.99□□□□□ -2.09
PCF11YDR228C TCO89Q08921 799 aa1.99□□□□□ -2.09
PCF11YDR228C ARD1P07347 238 aaPredicted RBP1.98□□□□□ -2.09
PCF11YDR228C RPL19AP0CX82 189 aaKnown RBP1.98□□□□□ -2.09
PCF11YDR228C RPL19BP0CX83 189 aaPredicted RBP1.98□□□□□ -2.09
PCF11YDR228C KAR3P17119 729 aa1.98□□□□□ -2.09
PCF11YDR228C ISY1P21374 235 aaPredicted RBP1.98□□□□□ -2.09
PCF11YDR228C NAM9P27929 486 aa1.98□□□□□ -2.09
PCF11YDR228C YBR144CP34215 104 aa1.98□□□□□ -2.09
PCF11YDR228C RRN3P36070 627 aa1.98□□□□□ -2.09
PCF11YDR228C AUR1P36107 401 aaPredicted RBP1.98□□□□□ -2.09
PCF11YDR228C CIN4P39110 191 aa1.98□□□□□ -2.09
PCF11YDR228C YGR126WP53274 230 aa1.98□□□□□ -2.09
PCF11YDR228C IRC15Q02733 499 aa1.98□□□□□ -2.09
PCF11YDR228C VIP1Q06685 1146 aaKnown RBP1.98□□□□□ -2.09
Retrieved 100 of 5,963 RNA–protein pairs in 15.9 ms