RNA–Protein interactions for RNA: YDL112W

TRM3, Transcript of 2'-O-ribose methyltransferase, yeastyeast

Gene TRM3, Length 4,311 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
TRM3YDL112W VPS9P54787 451 aa1.71□□□□□ -2.14
TRM3YDL112W SMA1Q02651 245 aa1.71□□□□□ -2.14
TRM3YDL112W EBS1Q03466 884 aaKnown RBP1.71□□□□□ -2.14
TRM3YDL112W SPG3Q04398 127 aaPredicted RBP1.71□□□□□ -2.14
TRM3YDL112W GFD1Q04839 188 aaKnown RBP1.71□□□□□ -2.14
TRM3YDL112W YDR222WQ04925 415 aa1.71□□□□□ -2.14
TRM3YDL112W YPR078CQ06813 372 aa1.71□□□□□ -2.14
TRM3YDL112W CMS1Q07897 291 aaKnown RBP1.71□□□□□ -2.14
TRM3YDL112W YPL216WQ08964 1102 aa1.71□□□□□ -2.14
TRM3YDL112W NEW1Q08972 1196 aaKnown RBP1.71□□□□□ -2.14
TRM3YDL112W LAS17Q12446 633 aa1.71□□□□□ -2.14
TRM3YDL112W NAG1Q8TGN9 163 aa1.71□□□□□ -2.14
TRM3YDL112W CDC33P07260 213 aaKnown RBP1.71□□□□□ -2.14
TRM3YDL112W YKR104WP0CE69 306 aa1.71□□□□□ -2.14
TRM3YDL112W CIN8P27895 1000 aa1.71□□□□□ -2.14
TRM3YDL112W TDP1P38319 544 aa1.71□□□□□ -2.14
TRM3YDL112W MIP6P38760 659 aaKnown RBP1.71□□□□□ -2.14
TRM3YDL112W ELO1P39540 310 aa1.71□□□□□ -2.14
TRM3YDL112W RPS10BP46784 105 aaKnown RBP1.71□□□□□ -2.14
TRM3YDL112W MPS3P47069 682 aa1.71□□□□□ -2.14
TRM3YDL112W NOP9P47077 666 aaKnown RBP1.71□□□□□ -2.14
TRM3YDL112W RHO3Q00245 231 aaKnown RBP1.71□□□□□ -2.14
TRM3YDL112W SLU7Q02775 382 aaKnown RBP1.71□□□□□ -2.14
TRM3YDL112W YMR160WQ03823 816 aa1.71□□□□□ -2.14
TRM3YDL112W SIL1Q08199 421 aa1.71□□□□□ -2.14
TRM3YDL112W THI20Q08224 551 aa1.71□□□□□ -2.14
TRM3YDL112W RPS10AQ08745 105 aaPredicted RBP1.71□□□□□ -2.14
TRM3YDL112W VPS68Q12016 184 aa1.71□□□□□ -2.14
TRM3YDL112W PEX11Q12462 236 aa1.71□□□□□ -2.14
TRM3YDL112W SKM1Q12469 655 aa1.71□□□□□ -2.14
TRM3YDL112W PRP6P19735 899 aaPredicted RBP1.7□□□□□ -2.14
TRM3YDL112W NUP1P20676 1076 aa1.7□□□□□ -2.14
TRM3YDL112W MRC1P25588 1096 aa1.7□□□□□ -2.14
TRM3YDL112W SEC1P30619 724 aaKnown RBP1.7□□□□□ -2.14
TRM3YDL112W NTH1P32356 751 aa1.7□□□□□ -2.14
TRM3YDL112W TAF14P35189 244 aa1.7□□□□□ -2.14
TRM3YDL112W IML3P38265 245 aa1.7□□□□□ -2.14
TRM3YDL112W HRB1P38922 454 aaKnown RBP RIP-Chip data1.7□□□□□ -2.14not detected
TRM3YDL112W PTI1P39927 425 aaPredicted RBP1.7□□□□□ -2.14
TRM3YDL112W TIF34P40217 347 aaKnown RBP1.7□□□□□ -2.14
TRM3YDL112W YFR018CP43599 363 aa1.7□□□□□ -2.14
TRM3YDL112W SIP4P46954 829 aa1.7□□□□□ -2.14
TRM3YDL112W YGL108CP53139 140 aa1.7□□□□□ -2.14
TRM3YDL112W YGR266WP53326 701 aa1.7□□□□□ -2.14
TRM3YDL112W YNL143CP53908 130 aa1.7□□□□□ -2.14
TRM3YDL112W KTR6P54070 446 aa1.7□□□□□ -2.14
TRM3YDL112W YML096WQ04489 525 aa1.7□□□□□ -2.14
TRM3YDL112W GPA1P08539 472 aa1.7□□□□□ -2.14
TRM3YDL112W SST2P11972 698 aaKnown RBP1.7□□□□□ -2.14
TRM3YDL112W GSY2P27472 705 aa1.7□□□□□ -2.14
TRM3YDL112W BRF1P29056 596 aa1.7□□□□□ -2.14
TRM3YDL112W MRPL9P31334 269 aa1.7□□□□□ -2.14
TRM3YDL112W AIM18P38884 321 aa1.7□□□□□ -2.14
TRM3YDL112W STN1P38960 494 aa1.7□□□□□ -2.14
TRM3YDL112W UBP7P40453 1071 aa1.7□□□□□ -2.14
TRM3YDL112W ASK10P48361 1146 aa1.7□□□□□ -2.14
TRM3YDL112W YGR111WP53265 400 aa1.7□□□□□ -2.14
TRM3YDL112W GND2P53319 492 aa1.7□□□□□ -2.14
TRM3YDL112W AQR1P53943 586 aa1.7□□□□□ -2.14
TRM3YDL112W YPR114WQ06107 315 aa1.7□□□□□ -2.14
TRM3YDL112W YKL033W-AQ86ZR7 236 aa1.7□□□□□ -2.14
TRM3YDL112W HIS1P00498 297 aaKnown RBP1.7□□□□□ -2.14
TRM3YDL112W RPL1AP0CX43 217 aaKnown RBP1.7□□□□□ -2.14
TRM3YDL112W RPL1BP0CX44 217 aaKnown RBP1.7□□□□□ -2.14
TRM3YDL112W MRS6P32864 603 aaKnown RBP1.7□□□□□ -2.14
TRM3YDL112W PIM1P36775 1133 aa1.7□□□□□ -2.14
TRM3YDL112W PCA1P38360 1216 aa1.7□□□□□ -2.14
TRM3YDL112W SRP68P38687 599 aaKnown RBP1.7□□□□□ -2.14
TRM3YDL112W STL1P39932 569 aa1.7□□□□□ -2.14
TRM3YDL112W RAD26P40352 1085 aa1.7□□□□□ -2.14
TRM3YDL112W TFG2P41896 400 aaPredicted RBP1.7□□□□□ -2.14
TRM3YDL112W STU2P46675 888 aa1.7□□□□□ -2.14
TRM3YDL112W YJL043WP47053 257 aa1.7□□□□□ -2.14
TRM3YDL112W YGR250CP53316 781 aaKnown RBP1.7□□□□□ -2.14
TRM3YDL112W EGD1Q02642 157 aaKnown RBP1.7□□□□□ -2.14
TRM3YDL112W ENT5Q03769 411 aaKnown RBP1.7□□□□□ -2.14
TRM3YDL112W YFT2Q06676 274 aa1.7□□□□□ -2.14
TRM3YDL112W PLB3Q08108 686 aa1.7□□□□□ -2.14
TRM3YDL112W GTT2Q12390 233 aa1.7□□□□□ -2.14
TRM3YDL112W SEC39Q12745 709 aa1.7□□□□□ -2.14
TRM3YDL112W EFG1Q3E705 233 aaKnown RBP1.7□□□□□ -2.14
TRM3YDL112W IZH4Q99393 312 aa1.7□□□□□ -2.14
TRM3YDL112W AI5_ALPHAQ9ZZX1 630 aa1.7□□□□□ -2.14
TRM3YDL112W NUM1Q00402 2748 aa1.7□□□□□ -2.14
TRM3YDL112W PCT1P13259 424 aa1.7□□□□□ -2.14
TRM3YDL112W ARF2P19146 181 aaKnown RBP1.7□□□□□ -2.14
TRM3YDL112W LDB16P25587 256 aa1.7□□□□□ -2.14
TRM3YDL112W CAP1P28495 268 aaKnown RBP1.7□□□□□ -2.14
TRM3YDL112W BEM1P29366 551 aa1.7□□□□□ -2.14
TRM3YDL112W PSO2P30620 661 aa1.7□□□□□ -2.14
TRM3YDL112W SRP72P38688 640 aaKnown RBP1.7□□□□□ -2.14
TRM3YDL112W YER130CP39959 443 aa1.7□□□□□ -2.14
TRM3YDL112W DUG1P43616 481 aaKnown RBP1.7□□□□□ -2.14
TRM3YDL112W MNT2P53059 558 aa1.7□□□□□ -2.14
TRM3YDL112W PEX8P53248 589 aa1.7□□□□□ -2.14
TRM3YDL112W YGR151CP53287 111 aa1.7□□□□□ -2.14
TRM3YDL112W SSL2Q00578 843 aa1.7□□□□□ -2.14
TRM3YDL112W TIM44Q01852 431 aa1.7□□□□□ -2.14
TRM3YDL112W ATG16Q03818 150 aa1.7□□□□□ -2.14
TRM3YDL112W NTO1Q12311 748 aa1.7□□□□□ -2.14
Retrieved 100 of 5,963 RNA–protein pairs in 32.5 ms