RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 MORC4Q8TE76 937 aa17.76■□□□□ 0.43
CLIP3-202ENST00000585466 UBAC1Q9BSL1 405 aa17.76■□□□□ 0.43
CLIP3-202ENST00000585466 SENP6Q9GZR1 1112 aaPredicted RBP17.76■□□□□ 0.43
CLIP3-202ENST00000585466 BAZ2BQ9UIF8 2168 aaKnown RBP17.75■□□□□ 0.43
CLIP3-202ENST00000585466 PGK1P00558 417 aa17.75■□□□□ 0.43
CLIP3-202ENST00000585466 RARBP10826 455 aa17.75■□□□□ 0.43
CLIP3-202ENST00000585466 ACVR2BQ13705 512 aa17.75■□□□□ 0.43
CLIP3-202ENST00000585466 SNX17Q15036 470 aa17.75■□□□□ 0.43
CLIP3-202ENST00000585466 IFIT1BQ5T764 474 aaKnown RBP17.75■□□□□ 0.43
CLIP3-202ENST00000585466 CCSAPQ6IQ19 270 aaPredicted RBP17.75■□□□□ 0.43
CLIP3-202ENST00000585466 CHRDL2Q6WN34 429 aa17.75■□□□□ 0.43
CLIP3-202ENST00000585466 SLC30A10Q6XR72 485 aa17.75■□□□□ 0.43
CLIP3-202ENST00000585466 ADGRF4Q8IZF3 695 aa17.75■□□□□ 0.43
CLIP3-202ENST00000585466 ABHD16BQ9H3Z7 469 aa17.75■□□□□ 0.43
CLIP3-202ENST00000585466 XPNPEP3Q9NQH7 507 aa17.75■□□□□ 0.43
CLIP3-202ENST00000585466 MAD2L2Q9UI95 211 aa17.75■□□□□ 0.43
CLIP3-202ENST00000585466 LTBP2Q14767 1821 aa17.75■□□□□ 0.43
CLIP3-202ENST00000585466 SYNRGQ9UMZ2 1314 aa17.74■□□□□ 0.43
CLIP3-202ENST00000585466 LAMA3Q16787 3333 aa17.74■□□□□ 0.43
CLIP3-202ENST00000585466 MYADML2A6NDP7 307 aa17.74■□□□□ 0.43
CLIP3-202ENST00000585466 CTAGE5O15320 804 aa17.74■□□□□ 0.43
CLIP3-202ENST00000585466 IRX5P78411 483 aaPredicted RBP17.74■□□□□ 0.43
CLIP3-202ENST00000585466 BAATQ14032 418 aaPredicted RBP17.74■□□□□ 0.43
CLIP3-202ENST00000585466 NECTIN1Q15223 517 aa17.74■□□□□ 0.43
CLIP3-202ENST00000585466 CDC37Q16543 378 aaPredicted RBP17.74■□□□□ 0.43
CLIP3-202ENST00000585466 NSMFQ6X4W1 530 aa17.74■□□□□ 0.43
CLIP3-202ENST00000585466 CHST3Q7LGC8 479 aa17.74■□□□□ 0.43
CLIP3-202ENST00000585466 KLHDC9Q8NEP7 349 aa17.74■□□□□ 0.43
CLIP3-202ENST00000585466 NCOA7Q8NI08 942 aa17.74■□□□□ 0.43
CLIP3-202ENST00000585466 IGDCC4Q8TDY8 1250 aa17.74■□□□□ 0.43
CLIP3-202ENST00000585466 MTMR8Q96EF0 704 aa17.74■□□□□ 0.43
CLIP3-202ENST00000585466 JMJD4Q9H9V9 463 aa17.74■□□□□ 0.43
CLIP3-202ENST00000585466 RBM27Q9P2N5 1060 aaKnown RBP17.74■□□□□ 0.43
CLIP3-202ENST00000585466 ZHX1Q9UKY1 873 aaPredicted RBP17.74■□□□□ 0.43
CLIP3-202ENST00000585466 PHF24Q9UPV7 400 aa17.74■□□□□ 0.43
CLIP3-202ENST00000585466 PALM3A6NDB9 673 aaPredicted RBP17.73■□□□□ 0.43
CLIP3-202ENST00000585466 SLC27A2O14975 620 aa17.73■□□□□ 0.43
CLIP3-202ENST00000585466 PARP1P09874 1014 aaKnown RBP17.73■□□□□ 0.43
CLIP3-202ENST00000585466 TROAPQ12815 778 aa17.73■□□□□ 0.43
CLIP3-202ENST00000585466 CCDC144BQ3MJ40 725 aa17.73■□□□□ 0.43
CLIP3-202ENST00000585466 GDF15Q99988 308 aa17.73■□□□□ 0.43
CLIP3-202ENST00000585466 UPF3AQ9H1J1 476 aaKnown RBP17.73■□□□□ 0.43
CLIP3-202ENST00000585466 GPHNQ9NQX3 736 aaPredicted RBP17.73■□□□□ 0.43
CLIP3-202ENST00000585466 FAM184BQ9ULE4 1060 aa17.73■□□□□ 0.43
CLIP3-202ENST00000585466 ZMYND8Q9ULU4 1186 aaPredicted RBP17.73■□□□□ 0.43
CLIP3-202ENST00000585466 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.72■□□□□ 0.43
CLIP3-202ENST00000585466 KBTBD13C9JR72 458 aa17.72■□□□□ 0.43
CLIP3-202ENST00000585466 DUSP11O75319 330 aaKnown RBP17.72■□□□□ 0.43
CLIP3-202ENST00000585466 SYN1P17600 705 aa17.72■□□□□ 0.43
CLIP3-202ENST00000585466 PTGS1P23219 599 aa17.72■□□□□ 0.43
CLIP3-202ENST00000585466 CST5P28325 142 aaPredicted RBP17.72■□□□□ 0.43
CLIP3-202ENST00000585466 ADCYAP1R1P41586 468 aa17.72■□□□□ 0.43
CLIP3-202ENST00000585466 ATN1P54259 1190 aaPredicted RBP17.72■□□□□ 0.43
CLIP3-202ENST00000585466 NKX3-2P78367 333 aa17.72■□□□□ 0.43
CLIP3-202ENST00000585466 TRDNQ13061 729 aa17.72■□□□□ 0.43
CLIP3-202ENST00000585466 GRM4Q14833 912 aa17.72■□□□□ 0.43
CLIP3-202ENST00000585466 QRICH1Q2TAL8 776 aa17.72■□□□□ 0.43
CLIP3-202ENST00000585466 TAPT1Q6NXT6 567 aa17.72■□□□□ 0.43
CLIP3-202ENST00000585466 CCDC136Q96JN2 1154 aa17.72■□□□□ 0.43
CLIP3-202ENST00000585466 ASB14A6NK59 587 aa17.71■□□□□ 0.43
CLIP3-202ENST00000585466 OPLAHO14841 1288 aa17.71■□□□□ 0.43
CLIP3-202ENST00000585466 IFIT3O14879 490 aaKnown RBP17.71■□□□□ 0.43
CLIP3-202ENST00000585466 PPP1R11O60927 126 aaPredicted RBP17.71■□□□□ 0.43
CLIP3-202ENST00000585466 ALDH5A1P51649 535 aaPredicted RBP17.71■□□□□ 0.43
CLIP3-202ENST00000585466 RTP1P59025 263 aa17.71■□□□□ 0.43
CLIP3-202ENST00000585466 RPS6P62753 249 aaKnown RBP17.71■□□□□ 0.43
CLIP3-202ENST00000585466 TMEM63BQ5T3F8 832 aa17.71■□□□□ 0.43
CLIP3-202ENST00000585466 C1orf53Q5VUE5 145 aa17.71■□□□□ 0.43
CLIP3-202ENST00000585466 CREB3L3Q68CJ9 461 aa17.71■□□□□ 0.43
CLIP3-202ENST00000585466 SLC39A5Q6ZMH5 540 aa17.71■□□□□ 0.43
CLIP3-202ENST00000585466 RALYLQ86SE5 291 aaKnown RBP17.71■□□□□ 0.43
CLIP3-202ENST00000585466 TBC1D5Q92609 795 aa17.71■□□□□ 0.43
CLIP3-202ENST00000585466 LY9Q9HBG7 655 aa17.71■□□□□ 0.43
CLIP3-202ENST00000585466 PNMA2Q9UL42 364 aa17.71■□□□□ 0.43
CLIP3-202ENST00000585466 GNEQ9Y223 722 aaKnown RBP17.71■□□□□ 0.43
CLIP3-202ENST00000585466 SZT2Q5T011 3432 aa17.71■□□□□ 0.43
CLIP3-202ENST00000585466 KLRF2D3W0D1 207 aa17.7■□□□□ 0.42
CLIP3-202ENST00000585466 CYTH3O43739 400 aa17.7■□□□□ 0.42
CLIP3-202ENST00000585466 EDNRBP24530 442 aa17.7■□□□□ 0.42
CLIP3-202ENST00000585466 FXR1P51114 621 aaKnown RBP eCLIP17.7■□□□□ 0.42
CLIP3-202ENST00000585466 GJA9P57773 515 aa17.7■□□□□ 0.42
CLIP3-202ENST00000585466 USH1GQ495M9 461 aa17.7■□□□□ 0.42
CLIP3-202ENST00000585466 KIAA1211Q6ZU35 1233 aa17.7■□□□□ 0.42
CLIP3-202ENST00000585466 FBXO16Q8IX29 292 aaPredicted RBP17.7■□□□□ 0.42
CLIP3-202ENST00000585466 RGS22Q8NE09 1264 aa17.7■□□□□ 0.42
CLIP3-202ENST00000585466 FERMT2Q96AC1 680 aa17.7■□□□□ 0.42
CLIP3-202ENST00000585466 ANO2Q9NQ90 1003 aa17.7■□□□□ 0.42
CLIP3-202ENST00000585466 PDGFCQ9NRA1 345 aa17.7■□□□□ 0.42
CLIP3-202ENST00000585466 COL20A1Q9P218 1284 aa17.7■□□□□ 0.42
CLIP3-202ENST00000585466 LOC102724159A0A0B4J2E5 919 aa17.69■□□□□ 0.42
CLIP3-202ENST00000585466 A0A1W2PQ45 241 aaPredicted RBP17.69■□□□□ 0.42
CLIP3-202ENST00000585466 A0A1W2PQY0 241 aa17.69■□□□□ 0.42
CLIP3-202ENST00000585466 PTPDC1A2A3K4 754 aa17.69■□□□□ 0.42
CLIP3-202ENST00000585466 CDC45O75419 566 aa17.69■□□□□ 0.42
CLIP3-202ENST00000585466 WTAPQ15007 396 aa17.69■□□□□ 0.42
CLIP3-202ENST00000585466 PWP2Q15269 919 aaKnown RBP17.69■□□□□ 0.42
CLIP3-202ENST00000585466 TMEM67Q5HYA8 995 aa17.69■□□□□ 0.42
CLIP3-202ENST00000585466 RNF207Q6ZRF8 634 aa17.69■□□□□ 0.42
CLIP3-202ENST00000585466 RNF180Q86T96 592 aa17.69■□□□□ 0.42
CLIP3-202ENST00000585466 TSEN34Q9BSV6 310 aaKnown RBP17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms