RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 MSL3Q8N5Y2 521 aaKnown RBP17.58■□□□□ 0.4
VPS39-210ENST00000568357 FAM133AQ8N9E0 248 aa17.58■□□□□ 0.4
VPS39-210ENST00000568357 IGDCC4Q8TDY8 1250 aa17.58■□□□□ 0.4
VPS39-210ENST00000568357 NRBP1Q9UHY1 535 aa17.58■□□□□ 0.4
VPS39-210ENST00000568357 SOWAHBA6NEL2 793 aa17.57■□□□□ 0.4
VPS39-210ENST00000568357 MSCO60682 206 aa17.57■□□□□ 0.4
VPS39-210ENST00000568357 LRIT3Q3SXY7 679 aa17.57■□□□□ 0.4
VPS39-210ENST00000568357 ASPRV1Q53RT3 343 aa17.57■□□□□ 0.4
VPS39-210ENST00000568357 ERICH6BQ5W0A0 696 aa17.57■□□□□ 0.4
VPS39-210ENST00000568357 ADGRF4Q8IZF3 695 aa17.57■□□□□ 0.4
VPS39-210ENST00000568357 CLEC4DQ8WXI8 215 aa17.57■□□□□ 0.4
VPS39-210ENST00000568357 PURBQ96QR8 312 aaKnown RBP17.57■□□□□ 0.4
VPS39-210ENST00000568357 GPHNQ9NQX3 736 aaPredicted RBP17.57■□□□□ 0.4
VPS39-210ENST00000568357 SPTBN5Q9NRC6 3674 aaKnown RBP17.57■□□□□ 0.4
VPS39-210ENST00000568357 VCANP13611 3396 aa17.56■□□□□ 0.4
VPS39-210ENST00000568357 SYNGAP1Q96PV0 1343 aa17.56■□□□□ 0.4
VPS39-210ENST00000568357 POTEB2H3BUK9 544 aa17.56■□□□□ 0.4
VPS39-210ENST00000568357 NFIBO00712 420 aa17.56■□□□□ 0.4
VPS39-210ENST00000568357 COL6A1P12109 1028 aa17.56■□□□□ 0.4
VPS39-210ENST00000568357 SYN1P17600 705 aa17.56■□□□□ 0.4
VPS39-210ENST00000568357 TMEM67Q5HYA8 995 aa17.56■□□□□ 0.4
VPS39-210ENST00000568357 CASC1Q6TDU7 716 aa17.56■□□□□ 0.4
VPS39-210ENST00000568357 NSMFQ6X4W1 530 aa17.56■□□□□ 0.4
VPS39-210ENST00000568357 C11orf49Q9H6J7 331 aa17.56■□□□□ 0.4
VPS39-210ENST00000568357 JMJD4Q9H9V9 463 aa17.56■□□□□ 0.4
VPS39-210ENST00000568357 VAT1LQ9HCJ6 419 aa17.56■□□□□ 0.4
VPS39-210ENST00000568357 CYP39A1Q9NYL5 469 aa17.56■□□□□ 0.4
VPS39-210ENST00000568357 MAD2L2Q9UI95 211 aa17.56■□□□□ 0.4
VPS39-210ENST00000568357 CNPY2Q9Y2B0 182 aa17.56■□□□□ 0.4
VPS39-210ENST00000568357 ASTN1O14525 1302 aa17.55■□□□□ 0.4
VPS39-210ENST00000568357 ERICH2A1L162 156 aa17.55■□□□□ 0.4
VPS39-210ENST00000568357 PALM3A6NDB9 673 aaPredicted RBP17.55■□□□□ 0.4
VPS39-210ENST00000568357 BAATQ14032 418 aaPredicted RBP17.55■□□□□ 0.4
VPS39-210ENST00000568357 WTAPQ15007 396 aa17.55■□□□□ 0.4
VPS39-210ENST00000568357 DDX49Q9Y6V7 483 aaKnown RBP17.55■□□□□ 0.4
VPS39-210ENST00000568357 ZNFX1Q9P2E3 1918 aaKnown RBP17.55■□□□□ 0.4
VPS39-210ENST00000568357 PFASO15067 1338 aa17.54■□□□□ 0.4
VPS39-210ENST00000568357 WDR19Q8NEZ3 1342 aa17.54■□□□□ 0.4
VPS39-210ENST00000568357 KLRF2D3W0D1 207 aa17.54■□□□□ 0.4
VPS39-210ENST00000568357 PRC1O43663 620 aa17.54■□□□□ 0.4
VPS39-210ENST00000568357 MAGEA10P43363 369 aaPredicted RBP17.54■□□□□ 0.4
VPS39-210ENST00000568357 TROAPQ12815 778 aa17.54■□□□□ 0.4
VPS39-210ENST00000568357 SART3Q15020 963 aaKnown RBP17.54■□□□□ 0.4
VPS39-210ENST00000568357 CDC37Q16543 378 aaPredicted RBP17.54■□□□□ 0.4
VPS39-210ENST00000568357 GJC2Q5T442 439 aaPredicted RBP17.54■□□□□ 0.4
VPS39-210ENST00000568357 ARMCX2Q7L311 632 aa17.54■□□□□ 0.4
VPS39-210ENST00000568357 CCDC144CPQ8IYA2 1237 aa17.54■□□□□ 0.4
VPS39-210ENST00000568357 RASEFQ8IZ41 740 aa17.54■□□□□ 0.4
VPS39-210ENST00000568357 TDHQ8IZJ6 230 aa17.54■□□□□ 0.4
VPS39-210ENST00000568357 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.54■□□□□ 0.4
VPS39-210ENST00000568357 PNMA2Q9UL42 364 aa17.54■□□□□ 0.4
VPS39-210ENST00000568357 MCM5P33992 734 aa17.53■□□□□ 0.4
VPS39-210ENST00000568357 ACVR2BQ13705 512 aa17.53■□□□□ 0.4
VPS39-210ENST00000568357 GRM4Q14833 912 aa17.53■□□□□ 0.4
VPS39-210ENST00000568357 SLC35G1Q2M3R5 365 aa17.53■□□□□ 0.4
VPS39-210ENST00000568357 QRICH1Q2TAL8 776 aa17.53■□□□□ 0.4
VPS39-210ENST00000568357 USH1GQ495M9 461 aa17.53■□□□□ 0.4
VPS39-210ENST00000568357 ARRDC4Q8NCT1 418 aa17.53■□□□□ 0.4
VPS39-210ENST00000568357 KATNBL1Q9H079 304 aa17.53■□□□□ 0.4
VPS39-210ENST00000568357 LY9Q9HBG7 655 aa17.53■□□□□ 0.4
VPS39-210ENST00000568357 DNM1LO00429 736 aa17.52■□□□□ 0.4
VPS39-210ENST00000568357 DHX16O60231 1041 aaKnown RBP17.52■□□□□ 0.4
VPS39-210ENST00000568357 RNF20Q5VTR2 975 aa17.52■□□□□ 0.4
VPS39-210ENST00000568357 LENG1Q96BZ8 264 aaPredicted RBP17.52■□□□□ 0.4
VPS39-210ENST00000568357 MTA3Q9BTC8 594 aa17.52■□□□□ 0.4
VPS39-210ENST00000568357 ABHD16BQ9H3Z7 469 aa17.52■□□□□ 0.4
VPS39-210ENST00000568357 ZHX1Q9UKY1 873 aaPredicted RBP17.52■□□□□ 0.4
VPS39-210ENST00000568357 PTPDC1A2A3K4 754 aa17.51■□□□□ 0.39
VPS39-210ENST00000568357 SH2B2O14492 632 aaPredicted RBP17.51■□□□□ 0.39
VPS39-210ENST00000568357 PGK1P00558 417 aa17.51■□□□□ 0.39
VPS39-210ENST00000568357 MYCNP04198 464 aaPredicted RBP17.51■□□□□ 0.39
VPS39-210ENST00000568357 RARBP10826 455 aa17.51■□□□□ 0.39
VPS39-210ENST00000568357 AKR1A1P14550 325 aa17.51■□□□□ 0.39
VPS39-210ENST00000568357 LRRC41Q15345 812 aa17.51■□□□□ 0.39
VPS39-210ENST00000568357 TSGA10IPQ3SY00 556 aa17.51■□□□□ 0.39
VPS39-210ENST00000568357 SLC30A10Q6XR72 485 aa17.51■□□□□ 0.39
VPS39-210ENST00000568357 RNF207Q6ZRF8 634 aa17.51■□□□□ 0.39
VPS39-210ENST00000568357 CATIPQ7Z7H3 387 aa17.51■□□□□ 0.39
VPS39-210ENST00000568357 TBC1D5Q92609 795 aa17.51■□□□□ 0.39
VPS39-210ENST00000568357 MTMR8Q96EF0 704 aa17.51■□□□□ 0.39
VPS39-210ENST00000568357 GUCD1Q96NT3 240 aa17.51■□□□□ 0.39
VPS39-210ENST00000568357 MYL10Q9BUA6 226 aa17.51■□□□□ 0.39
VPS39-210ENST00000568357 LRRC2Q9BYS8 371 aa17.51■□□□□ 0.39
VPS39-210ENST00000568357 SENP6Q9GZR1 1112 aaPredicted RBP17.51■□□□□ 0.39
VPS39-210ENST00000568357 XPNPEP3Q9NQH7 507 aa17.51■□□□□ 0.39
VPS39-210ENST00000568357 FAM184BQ9ULE4 1060 aa17.51■□□□□ 0.39
VPS39-210ENST00000568357 ASB14A6NK59 587 aa17.5■□□□□ 0.39
VPS39-210ENST00000568357 ADCY6O43306 1168 aa17.5■□□□□ 0.39
VPS39-210ENST00000568357 CALML3P27482 149 aa17.5■□□□□ 0.39
VPS39-210ENST00000568357 RPS6P62753 249 aaKnown RBP17.5■□□□□ 0.39
VPS39-210ENST00000568357 ADCK5Q3MIX3 580 aa17.5■□□□□ 0.39
VPS39-210ENST00000568357 CCDC144BQ3MJ40 725 aa17.5■□□□□ 0.39
VPS39-210ENST00000568357 FBXO11Q86XK2 927 aa17.5■□□□□ 0.39
VPS39-210ENST00000568357 ZNF654Q8IZM8 581 aa17.5■□□□□ 0.39
VPS39-210ENST00000568357 RGS22Q8NE09 1264 aa17.5■□□□□ 0.39
VPS39-210ENST00000568357 NUP133Q8WUM0 1156 aa17.5■□□□□ 0.39
VPS39-210ENST00000568357 TMEM87BQ96K49 555 aa17.5■□□□□ 0.39
VPS39-210ENST00000568357 NEK1Q96PY6 1258 aa17.5■□□□□ 0.39
VPS39-210ENST00000568357 RIOX1Q9H6W3 641 aa17.5■□□□□ 0.39
VPS39-210ENST00000568357 EYSQ5T1H1 3165 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms