RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 ADAMTS4O75173 837 aa24.28■■□□□ 1.48
CLN3-219ENST00000565778 MDM2Q00987 491 aaPredicted RBP24.28■■□□□ 1.48
CLN3-219ENST00000565778 TSEN34Q9BSV6 310 aaKnown RBP24.28■■□□□ 1.48
CLN3-219ENST00000565778 PTPDC1A2A3K4 754 aa24.27■■□□□ 1.48
CLN3-219ENST00000565778 KCNA10Q16322 511 aa24.27■■□□□ 1.48
CLN3-219ENST00000565778 TRIM60Q495X7 471 aa24.27■■□□□ 1.48
CLN3-219ENST00000565778 NOL8Q76FK4 1167 aaKnown RBP24.27■■□□□ 1.48
CLN3-219ENST00000565778 PURBQ96QR8 312 aaKnown RBP24.27■■□□□ 1.48
CLN3-219ENST00000565778 CPVLQ9H3G5 476 aa24.27■■□□□ 1.48
CLN3-219ENST00000565778 SYNRGQ9UMZ2 1314 aa24.27■■□□□ 1.48
CLN3-219ENST00000565778 NFIBO00712 420 aa24.26■■□□□ 1.47
CLN3-219ENST00000565778 SGSM2O43147 1006 aa24.26■■□□□ 1.47
CLN3-219ENST00000565778 C6orf222P0C671 652 aaPredicted RBP24.26■■□□□ 1.47
CLN3-219ENST00000565778 ACLYP53396 1101 aa24.26■■□□□ 1.47
CLN3-219ENST00000565778 TNFAIP2Q03169 654 aa24.26■■□□□ 1.47
CLN3-219ENST00000565778 IFIT1BQ5T764 474 aaKnown RBP24.26■■□□□ 1.47
CLN3-219ENST00000565778 KLHDC9Q8NEP7 349 aa24.26■■□□□ 1.47
CLN3-219ENST00000565778 NUP133Q8WUM0 1156 aa24.26■■□□□ 1.47
CLN3-219ENST00000565778 KATNBL1Q9H079 304 aa24.26■■□□□ 1.47
CLN3-219ENST00000565778 A0A1W2PQ45 241 aaPredicted RBP24.25■■□□□ 1.47
CLN3-219ENST00000565778 A0A1W2PQY0 241 aa24.25■■□□□ 1.47
CLN3-219ENST00000565778 CYP21A2P08686 494 aa24.25■■□□□ 1.47
CLN3-219ENST00000565778 SNX17Q15036 470 aa24.25■■□□□ 1.47
CLN3-219ENST00000565778 C1orf53Q5VUE5 145 aa24.25■■□□□ 1.47
CLN3-219ENST00000565778 CYB5R4Q7L1T6 521 aa24.25■■□□□ 1.47
CLN3-219ENST00000565778 EEPD1Q7L9B9 569 aa24.25■■□□□ 1.47
CLN3-219ENST00000565778 PRDM5Q9NQX1 630 aaPredicted RBP24.25■■□□□ 1.47
CLN3-219ENST00000565778 ADD3Q9UEY8 706 aaKnown RBP24.25■■□□□ 1.47
CLN3-219ENST00000565778 DDX49Q9Y6V7 483 aaKnown RBP24.25■■□□□ 1.47
CLN3-219ENST00000565778 TRIOBPQ9H2D6 2365 aa24.25■■□□□ 1.47
CLN3-219ENST00000565778 DNAH12Q6ZR08 3092 aa24.25■■□□□ 1.47
CLN3-219ENST00000565778 ADCY6O43306 1168 aa24.24■■□□□ 1.47
CLN3-219ENST00000565778 DHX16O60231 1041 aaKnown RBP24.24■■□□□ 1.47
CLN3-219ENST00000565778 PARP1P09874 1014 aaKnown RBP24.24■■□□□ 1.47
CLN3-219ENST00000565778 CALML3P27482 149 aa24.24■■□□□ 1.47
CLN3-219ENST00000565778 IRX5P78411 483 aaPredicted RBP24.24■■□□□ 1.47
CLN3-219ENST00000565778 USH1GQ495M9 461 aa24.24■■□□□ 1.47
CLN3-219ENST00000565778 ASPRV1Q53RT3 343 aa24.24■■□□□ 1.47
CLN3-219ENST00000565778 GNASQ5JWF2 1037 aa24.24■■□□□ 1.47
CLN3-219ENST00000565778 RNF207Q6ZRF8 634 aa24.24■■□□□ 1.47
CLN3-219ENST00000565778 ADGRF4Q8IZF3 695 aa24.24■■□□□ 1.47
CLN3-219ENST00000565778 CLEC4DQ8WXI8 215 aa24.24■■□□□ 1.47
CLN3-219ENST00000565778 VTI1AQ96AJ9 217 aa24.24■■□□□ 1.47
CLN3-219ENST00000565778 VAT1LQ9HCJ6 419 aa24.24■■□□□ 1.47
CLN3-219ENST00000565778 ASTN1O14525 1302 aa24.24■■□□□ 1.47
CLN3-219ENST00000565778 C11orf97A0A1B0GVM6 126 aaPredicted RBP24.23■■□□□ 1.47
CLN3-219ENST00000565778 MOXD2PA6NHM9 499 aa24.23■■□□□ 1.47
CLN3-219ENST00000565778 GJA9P57773 515 aa24.23■■□□□ 1.47
CLN3-219ENST00000565778 TLE2Q04725 743 aa24.23■■□□□ 1.47
CLN3-219ENST00000565778 KIAA1211Q6ZU35 1233 aa24.23■■□□□ 1.47
CLN3-219ENST00000565778 TDHQ8IZJ6 230 aa24.23■■□□□ 1.47
CLN3-219ENST00000565778 PCSK9Q8NBP7 692 aaKnown RBP24.23■■□□□ 1.47
CLN3-219ENST00000565778 STARD7Q9NQZ5 370 aa24.23■■□□□ 1.47
CLN3-219ENST00000565778 WDR19Q8NEZ3 1342 aa24.23■■□□□ 1.47
CLN3-219ENST00000565778 MYADML2A6NDP7 307 aa24.22■■□□□ 1.47
CLN3-219ENST00000565778 IQSEC1Q6DN90 963 aa24.22■■□□□ 1.47
CLN3-219ENST00000565778 CCSAPQ6IQ19 270 aaPredicted RBP24.22■■□□□ 1.47
CLN3-219ENST00000565778 RALYLQ86SE5 291 aaKnown RBP24.22■■□□□ 1.47
CLN3-219ENST00000565778 MAP4K1Q92918 833 aa24.22■■□□□ 1.47
CLN3-219ENST00000565778 PDGFCQ9NRA1 345 aa24.22■■□□□ 1.47
CLN3-219ENST00000565778 ERICH2A1L162 156 aa24.21■■□□□ 1.47
CLN3-219ENST00000565778 IFIT3O14879 490 aaKnown RBP24.21■■□□□ 1.47
CLN3-219ENST00000565778 ASGR1P07306 291 aa24.21■■□□□ 1.47
CLN3-219ENST00000565778 CST5P28325 142 aaPredicted RBP24.21■■□□□ 1.47
CLN3-219ENST00000565778 ALDH5A1P51649 535 aaPredicted RBP24.21■■□□□ 1.47
CLN3-219ENST00000565778 SEC23AQ15436 765 aa24.21■■□□□ 1.47
CLN3-219ENST00000565778 CDC37Q16543 378 aaPredicted RBP24.21■■□□□ 1.47
CLN3-219ENST00000565778 SLC30A10Q6XR72 485 aa24.21■■□□□ 1.47
CLN3-219ENST00000565778 FBXO16Q8IX29 292 aaPredicted RBP24.21■■□□□ 1.47
CLN3-219ENST00000565778 NCOA7Q8NI08 942 aa24.21■■□□□ 1.47
CLN3-219ENST00000565778 GLT1D1Q96MS3 346 aa24.21■■□□□ 1.47
CLN3-219ENST00000565778 AP5M1Q9H0R1 490 aa24.21■■□□□ 1.47
CLN3-219ENST00000565778 UPF3AQ9H1J1 476 aaKnown RBP24.21■■□□□ 1.47
CLN3-219ENST00000565778 LAMA4Q16363 1823 aa24.21■■□□□ 1.47
CLN3-219ENST00000565778 RANBP2P49792 3224 aaKnown RBP24.21■■□□□ 1.47
CLN3-219ENST00000565778 E7EWF7 191 aa24.2■■□□□ 1.46
CLN3-219ENST00000565778 DYNC1LI2O43237 492 aaPredicted RBP24.2■■□□□ 1.46
CLN3-219ENST00000565778 PQBP1O60828 265 aaKnown RBP24.2■■□□□ 1.46
CLN3-219ENST00000565778 RPS6P62753 249 aaKnown RBP24.2■■□□□ 1.46
CLN3-219ENST00000565778 TAPT1Q6NXT6 567 aa24.2■■□□□ 1.46
CLN3-219ENST00000565778 CENPQQ7L2Z9 268 aaPredicted RBP24.2■■□□□ 1.46
CLN3-219ENST00000565778 SH3RF1Q7Z6J0 888 aa24.2■■□□□ 1.46
CLN3-219ENST00000565778 MORC4Q8TE76 937 aa24.2■■□□□ 1.46
CLN3-219ENST00000565778 VTA1Q9NP79 307 aa24.2■■□□□ 1.46
CLN3-219ENST00000565778 SOX1O00570 391 aaPredicted RBP24.19■■□□□ 1.46
CLN3-219ENST00000565778 SMPD1P17405 629 aa24.19■■□□□ 1.46
CLN3-219ENST00000565778 BEX3Q00994 111 aa24.19■■□□□ 1.46
CLN3-219ENST00000565778 STAG2Q8N3U4 1231 aa24.19■■□□□ 1.46
CLN3-219ENST00000565778 MPHOSPH6Q99547 160 aaKnown RBP24.19■■□□□ 1.46
CLN3-219ENST00000565778 PDLIM7Q9NR12 457 aa24.19■■□□□ 1.46
CLN3-219ENST00000565778 GNEQ9Y223 722 aaKnown RBP24.19■■□□□ 1.46
CLN3-219ENST00000565778 RBM8AQ9Y5S9 174 aaKnown RBP24.19■■□□□ 1.46
CLN3-219ENST00000565778 TAF6LQ9Y6J9 622 aa24.19■■□□□ 1.46
CLN3-219ENST00000565778 ELP1O95163 1332 aa24.18■■□□□ 1.46
CLN3-219ENST00000565778 LOC102724159A0A0B4J2E5 919 aa24.18■■□□□ 1.46
CLN3-219ENST00000565778 TRIM43BA6NCK2 446 aa24.18■■□□□ 1.46
CLN3-219ENST00000565778 DCDC2CA8MYV0 355 aa24.18■■□□□ 1.46
CLN3-219ENST00000565778 KLRF2D3W0D1 207 aa24.18■■□□□ 1.46
CLN3-219ENST00000565778 CLTBP09497 229 aa24.18■■□□□ 1.46
CLN3-219ENST00000565778 SART3Q15020 963 aaKnown RBP24.18■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms