RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 KLRF2D3W0D1 207 aa24.04■■□□□ 1.44
CCDC88C-210ENST00000555995 PRC1O43663 620 aa24.04■■□□□ 1.44
CCDC88C-210ENST00000555995 DDAH1O94760 285 aa24.04■■□□□ 1.44
CCDC88C-210ENST00000555995 REC8O95072 547 aa24.04■■□□□ 1.44
CCDC88C-210ENST00000555995 ANTXR2P58335 489 aa24.04■■□□□ 1.44
CCDC88C-210ENST00000555995 GRM4Q14833 912 aa24.04■■□□□ 1.44
CCDC88C-210ENST00000555995 ARMCX2Q7L311 632 aa24.04■■□□□ 1.44
CCDC88C-210ENST00000555995 CDKN2AIPQ9NXV6 580 aaPredicted RBP24.04■■□□□ 1.44
CCDC88C-210ENST00000555995 ZHX1Q9UKY1 873 aaPredicted RBP24.04■■□□□ 1.44
CCDC88C-210ENST00000555995 FAM184BQ9ULE4 1060 aa24.04■■□□□ 1.44
CCDC88C-210ENST00000555995 SMCHD1A6NHR9 2005 aa24.04■■□□□ 1.44
CCDC88C-210ENST00000555995 ZNF865P0CJ78 1059 aaPredicted RBP24.03■■□□□ 1.44
CCDC88C-210ENST00000555995 KIF5BP33176 963 aa24.03■■□□□ 1.44
CCDC88C-210ENST00000555995 CNTN2Q02246 1040 aa24.03■■□□□ 1.44
CCDC88C-210ENST00000555995 PRAMEF19Q5SWL8 479 aa24.03■■□□□ 1.44
CCDC88C-210ENST00000555995 RGS22Q8NE09 1264 aa24.03■■□□□ 1.44
CCDC88C-210ENST00000555995 IGDCC4Q8TDY8 1250 aa24.03■■□□□ 1.44
CCDC88C-210ENST00000555995 MAD2L2Q9UI95 211 aa24.03■■□□□ 1.44
CCDC88C-210ENST00000555995 LCTP09848 1927 aa24.03■■□□□ 1.44
CCDC88C-210ENST00000555995 LRRC37A2A6NM11 1700 aa24.03■■□□□ 1.44
CCDC88C-210ENST00000555995 PTPDC1A2A3K4 754 aa24.02■■□□□ 1.44
CCDC88C-210ENST00000555995 PALM3A6NDB9 673 aaPredicted RBP24.02■■□□□ 1.44
CCDC88C-210ENST00000555995 B4DLN1 442 aa24.02■■□□□ 1.44
CCDC88C-210ENST00000555995 EVI5O60447 810 aa24.02■■□□□ 1.44
CCDC88C-210ENST00000555995 SNAI1O95863 264 aaPredicted RBP24.02■■□□□ 1.44
CCDC88C-210ENST00000555995 COL6A1P12109 1028 aa24.02■■□□□ 1.44
CCDC88C-210ENST00000555995 LIFRP42702 1097 aa24.02■■□□□ 1.44
CCDC88C-210ENST00000555995 MNX1P50219 401 aaPredicted RBP24.02■■□□□ 1.44
CCDC88C-210ENST00000555995 MRPL12P52815 198 aaKnown RBP24.02■■□□□ 1.44
CCDC88C-210ENST00000555995 ACVR2BQ13705 512 aa24.02■■□□□ 1.44
CCDC88C-210ENST00000555995 TSGA10IPQ3SY00 556 aa24.02■■□□□ 1.44
CCDC88C-210ENST00000555995 RNF207Q6ZRF8 634 aa24.02■■□□□ 1.44
CCDC88C-210ENST00000555995 CHST3Q7LGC8 479 aa24.02■■□□□ 1.44
CCDC88C-210ENST00000555995 CCDC144CPQ8IYA2 1237 aa24.02■■□□□ 1.44
CCDC88C-210ENST00000555995 CTCFLQ8NI51 663 aaPredicted RBP24.02■■□□□ 1.44
CCDC88C-210ENST00000555995 FGD4Q96M96 766 aa24.02■■□□□ 1.44
CCDC88C-210ENST00000555995 XPNPEP3Q9NQH7 507 aa24.02■■□□□ 1.44
CCDC88C-210ENST00000555995 ALPK3Q96L96 1907 aa24.02■■□□□ 1.44
CCDC88C-210ENST00000555995 CCDC69A6NI79 296 aa24.01■■□□□ 1.43
CCDC88C-210ENST00000555995 NFIBO00712 420 aa24.01■■□□□ 1.43
CCDC88C-210ENST00000555995 EPB41L2O43491 1005 aaKnown RBP24.01■■□□□ 1.43
CCDC88C-210ENST00000555995 CALM1P0DP23 149 aa24.01■■□□□ 1.43
CCDC88C-210ENST00000555995 CALM2P0DP24 149 aa24.01■■□□□ 1.43
CCDC88C-210ENST00000555995 CALM3P0DP25 149 aa24.01■■□□□ 1.43
CCDC88C-210ENST00000555995 TROAPQ12815 778 aa24.01■■□□□ 1.43
CCDC88C-210ENST00000555995 QRICH1Q2TAL8 776 aa24.01■■□□□ 1.43
CCDC88C-210ENST00000555995 USH1GQ495M9 461 aa24.01■■□□□ 1.43
CCDC88C-210ENST00000555995 NFXL1Q6ZNB6 911 aa24.01■■□□□ 1.43
CCDC88C-210ENST00000555995 RNF180Q86T96 592 aa24.01■■□□□ 1.43
CCDC88C-210ENST00000555995 FBXO11Q86XK2 927 aa24.01■■□□□ 1.43
CCDC88C-210ENST00000555995 MCF2L2Q86YR7 1114 aa24.01■■□□□ 1.43
CCDC88C-210ENST00000555995 AMNQ9BXJ7 453 aa24.01■■□□□ 1.43
CCDC88C-210ENST00000555995 JMJD4Q9H9V9 463 aa24.01■■□□□ 1.43
CCDC88C-210ENST00000555995 LY9Q9HBG7 655 aa24.01■■□□□ 1.43
CCDC88C-210ENST00000555995 MRPL11Q9Y3B7 192 aaKnown RBP24.01■■□□□ 1.43
CCDC88C-210ENST00000555995 SH2B2O14492 632 aaPredicted RBP24■■□□□ 1.43
CCDC88C-210ENST00000555995 HMGB1P09429 215 aaKnown RBP24■■□□□ 1.43
CCDC88C-210ENST00000555995 BAATQ14032 418 aaPredicted RBP24■■□□□ 1.43
CCDC88C-210ENST00000555995 ZNF654Q8IZM8 581 aa24■■□□□ 1.43
CCDC88C-210ENST00000555995 STAG2Q8N3U4 1231 aa24■■□□□ 1.43
CCDC88C-210ENST00000555995 DNERQ8NFT8 737 aa24■■□□□ 1.43
CCDC88C-210ENST00000555995 CLEC4DQ8WXI8 215 aa24■■□□□ 1.43
CCDC88C-210ENST00000555995 NEK1Q96PY6 1258 aa24■■□□□ 1.43
CCDC88C-210ENST00000555995 CPVLQ9H3G5 476 aa24■■□□□ 1.43
CCDC88C-210ENST00000555995 SPC25Q9HBM1 224 aa24■■□□□ 1.43
CCDC88C-210ENST00000555995 SOWAHBA6NEL2 793 aa23.99■■□□□ 1.43
CCDC88C-210ENST00000555995 ZBTB5O15062 677 aa23.99■■□□□ 1.43
CCDC88C-210ENST00000555995 TAL1P17542 331 aaPredicted RBP23.99■■□□□ 1.43
CCDC88C-210ENST00000555995 GNAQP50148 359 aa23.99■■□□□ 1.43
CCDC88C-210ENST00000555995 DUSP11O75319 330 aaKnown RBP23.98■■□□□ 1.43
CCDC88C-210ENST00000555995 ANO1Q5XXA6 986 aa23.98■■□□□ 1.43
CCDC88C-210ENST00000555995 SAMD3Q8N6K7 520 aa23.98■■□□□ 1.43
CCDC88C-210ENST00000555995 MORC4Q8TE76 937 aa23.98■■□□□ 1.43
CCDC88C-210ENST00000555995 NUP133Q8WUM0 1156 aa23.98■■□□□ 1.43
CCDC88C-210ENST00000555995 MTMR8Q96EF0 704 aa23.98■■□□□ 1.43
CCDC88C-210ENST00000555995 LZTS2Q9BRK4 669 aa23.98■■□□□ 1.43
CCDC88C-210ENST00000555995 VAT1LQ9HCJ6 419 aa23.98■■□□□ 1.43
CCDC88C-210ENST00000555995 VTA1Q9NP79 307 aa23.98■■□□□ 1.43
CCDC88C-210ENST00000555995 CALML3P27482 149 aa23.97■■□□□ 1.43
CCDC88C-210ENST00000555995 SMARCA1P28370 1054 aa23.97■■□□□ 1.43
CCDC88C-210ENST00000555995 ALDH5A1P51649 535 aaPredicted RBP23.97■■□□□ 1.43
CCDC88C-210ENST00000555995 RPS6P62753 249 aaKnown RBP23.97■■□□□ 1.43
CCDC88C-210ENST00000555995 LRRC41Q15345 812 aa23.97■■□□□ 1.43
CCDC88C-210ENST00000555995 GJC2Q5T442 439 aaPredicted RBP23.97■■□□□ 1.43
CCDC88C-210ENST00000555995 SYNE3Q6ZMZ3 975 aa23.97■■□□□ 1.43
CCDC88C-210ENST00000555995 RIOX1Q9H6W3 641 aa23.97■■□□□ 1.43
CCDC88C-210ENST00000555995 CCDC144BQ3MJ40 725 aa23.96■■□□□ 1.43
CCDC88C-210ENST00000555995 SLC30A10Q6XR72 485 aa23.96■■□□□ 1.43
CCDC88C-210ENST00000555995 TSEN34Q9BSV6 310 aaKnown RBP23.96■■□□□ 1.43
CCDC88C-210ENST00000555995 SPZ1Q9BXG8 430 aa23.96■■□□□ 1.43
CCDC88C-210ENST00000555995 SENP6Q9GZR1 1112 aaPredicted RBP23.96■■□□□ 1.43
CCDC88C-210ENST00000555995 SENP2Q9HC62 589 aa23.96■■□□□ 1.43
CCDC88C-210ENST00000555995 MAP3K20Q9NYL2 800 aaKnown RBP23.96■■□□□ 1.43
CCDC88C-210ENST00000555995 SLC12A7Q9Y666 1083 aa23.96■■□□□ 1.43
CCDC88C-210ENST00000555995 MYCNP04198 464 aaPredicted RBP23.95■■□□□ 1.42
CCDC88C-210ENST00000555995 DHX32Q7L7V1 743 aaKnown RBP23.95■■□□□ 1.42
CCDC88C-210ENST00000555995 SGMS1Q86VZ5 419 aa23.95■■□□□ 1.42
CCDC88C-210ENST00000555995 KATNBL1Q9H079 304 aa23.95■■□□□ 1.42
CCDC88C-210ENST00000555995 ASTN1O14525 1302 aa23.94■■□□□ 1.42
CCDC88C-210ENST00000555995 SYNRGQ9UMZ2 1314 aa23.94■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms