RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 CHRDL2Q6WN34 429 aa13.44□□□□□ -0.26
VCAN-212ENST00000515397 ARMCX2Q7L311 632 aa13.44□□□□□ -0.26
VCAN-212ENST00000515397 NCOA7Q8NI08 942 aa13.44□□□□□ -0.26
VCAN-212ENST00000515397 CLEC4DQ8WXI8 215 aa13.44□□□□□ -0.26
VCAN-212ENST00000515397 LRRC2Q9BYS8 371 aa13.44□□□□□ -0.26
VCAN-212ENST00000515397 XPNPEP3Q9NQH7 507 aa13.44□□□□□ -0.26
VCAN-212ENST00000515397 TRIOBPQ9H2D6 2365 aa13.44□□□□□ -0.26
VCAN-212ENST00000515397 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.43□□□□□ -0.26
VCAN-212ENST00000515397 ADCY6O43306 1168 aa13.43□□□□□ -0.26
VCAN-212ENST00000515397 MSCO60682 206 aa13.43□□□□□ -0.26
VCAN-212ENST00000515397 RARBP10826 455 aa13.43□□□□□ -0.26
VCAN-212ENST00000515397 CALML3P27482 149 aa13.43□□□□□ -0.26
VCAN-212ENST00000515397 ADCYAP1R1P41586 468 aa13.43□□□□□ -0.26
VCAN-212ENST00000515397 WTAPQ15007 396 aa13.43□□□□□ -0.26
VCAN-212ENST00000515397 CDC37Q16543 378 aaPredicted RBP13.43□□□□□ -0.26
VCAN-212ENST00000515397 SLC35G1Q2M3R5 365 aa13.43□□□□□ -0.26
VCAN-212ENST00000515397 MAMDC4Q6UXC1 1216 aa13.43□□□□□ -0.26
VCAN-212ENST00000515397 SLC30A10Q6XR72 485 aa13.43□□□□□ -0.26
VCAN-212ENST00000515397 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.43□□□□□ -0.26
VCAN-212ENST00000515397 RAB11FIP4Q86YS3 637 aa13.43□□□□□ -0.26
VCAN-212ENST00000515397 MB21D2Q8IYB1 491 aaPredicted RBP13.43□□□□□ -0.26
VCAN-212ENST00000515397 ARRDC4Q8NCT1 418 aa13.43□□□□□ -0.26
VCAN-212ENST00000515397 IGDCC4Q8TDY8 1250 aa13.43□□□□□ -0.26
VCAN-212ENST00000515397 PIBF1Q8WXW3 757 aa13.43□□□□□ -0.26
VCAN-212ENST00000515397 MYL10Q9BUA6 226 aa13.43□□□□□ -0.26
VCAN-212ENST00000515397 JMJD4Q9H9V9 463 aa13.43□□□□□ -0.26
VCAN-212ENST00000515397 PDGFCQ9NRA1 345 aa13.43□□□□□ -0.26
VCAN-212ENST00000515397 MAD2L2Q9UI95 211 aa13.43□□□□□ -0.26
VCAN-212ENST00000515397 FAM184BQ9ULE4 1060 aa13.43□□□□□ -0.26
VCAN-212ENST00000515397 NR2E3Q9Y5X4 410 aa13.43□□□□□ -0.26
VCAN-212ENST00000515397 ZNF236Q9UL36 1845 aa13.43□□□□□ -0.26
VCAN-212ENST00000515397 SYNGAP1Q96PV0 1343 aa13.42□□□□□ -0.26
VCAN-212ENST00000515397 LAMA4Q16363 1823 aa13.42□□□□□ -0.26
VCAN-212ENST00000515397 MYADML2A6NDP7 307 aa13.42□□□□□ -0.26
VCAN-212ENST00000515397 KLRF2D3W0D1 207 aa13.42□□□□□ -0.26
VCAN-212ENST00000515397 CAPN2P17655 700 aa13.42□□□□□ -0.26
VCAN-212ENST00000515397 NECTIN1Q15223 517 aa13.42□□□□□ -0.26
VCAN-212ENST00000515397 QRICH1Q2TAL8 776 aa13.42□□□□□ -0.26
VCAN-212ENST00000515397 CCDC144BQ3MJ40 725 aa13.42□□□□□ -0.26
VCAN-212ENST00000515397 ASPRV1Q53RT3 343 aa13.42□□□□□ -0.26
VCAN-212ENST00000515397 NOL8Q76FK4 1167 aaKnown RBP13.42□□□□□ -0.26
VCAN-212ENST00000515397 NUP133Q8WUM0 1156 aa13.42□□□□□ -0.26
VCAN-212ENST00000515397 ERICH2A1L162 156 aa13.41□□□□□ -0.26
VCAN-212ENST00000515397 KBTBD13C9JR72 458 aa13.41□□□□□ -0.26
VCAN-212ENST00000515397 DNM1LO00429 736 aa13.41□□□□□ -0.26
VCAN-212ENST00000515397 PRC1O43663 620 aa13.41□□□□□ -0.26
VCAN-212ENST00000515397 CDC45O75419 566 aa13.41□□□□□ -0.26
VCAN-212ENST00000515397 AKR1A1P14550 325 aa13.41□□□□□ -0.26
VCAN-212ENST00000515397 ZNF467Q7Z7K2 595 aaPredicted RBP13.41□□□□□ -0.26
VCAN-212ENST00000515397 FBXO16Q8IX29 292 aaPredicted RBP13.41□□□□□ -0.26
VCAN-212ENST00000515397 RASEFQ8IZ41 740 aa13.41□□□□□ -0.26
VCAN-212ENST00000515397 TCEANC2Q96MN5 208 aa13.41□□□□□ -0.26
VCAN-212ENST00000515397 KATNBL1Q9H079 304 aa13.41□□□□□ -0.26
VCAN-212ENST00000515397 PLXNA1Q9UIW2 1896 aa13.41□□□□□ -0.26
VCAN-212ENST00000515397 BAZ2BQ9UIF8 2168 aaKnown RBP13.4□□□□□ -0.26
VCAN-212ENST00000515397 PALM3A6NDB9 673 aaPredicted RBP13.4□□□□□ -0.26
VCAN-212ENST00000515397 PPP1R11O60927 126 aaPredicted RBP13.4□□□□□ -0.26
VCAN-212ENST00000515397 RXRAP19793 462 aa13.4□□□□□ -0.26
VCAN-212ENST00000515397 NT5C2P49902 561 aa13.4□□□□□ -0.26
VCAN-212ENST00000515397 RPS6P62753 249 aaKnown RBP13.4□□□□□ -0.26
VCAN-212ENST00000515397 BEX3Q00994 111 aa13.4□□□□□ -0.26
VCAN-212ENST00000515397 HABP4Q5JVS0 413 aaKnown RBP13.4□□□□□ -0.26
VCAN-212ENST00000515397 SLC39A5Q6ZMH5 540 aa13.4□□□□□ -0.26
VCAN-212ENST00000515397 RNF207Q6ZRF8 634 aa13.4□□□□□ -0.26
VCAN-212ENST00000515397 HOMER1Q86YM7 354 aa13.4□□□□□ -0.26
VCAN-212ENST00000515397 MSL3Q8N5Y2 521 aaKnown RBP13.4□□□□□ -0.26
VCAN-212ENST00000515397 ABHD16BQ9H3Z7 469 aa13.4□□□□□ -0.26
VCAN-212ENST00000515397 LY9Q9HBG7 655 aa13.4□□□□□ -0.26
VCAN-212ENST00000515397 RBM27Q9P2N5 1060 aaKnown RBP13.4□□□□□ -0.26
VCAN-212ENST00000515397 NRBP1Q9UHY1 535 aa13.4□□□□□ -0.26
VCAN-212ENST00000515397 ATP11BQ9Y2G3 1177 aa13.4□□□□□ -0.26
VCAN-212ENST00000515397 MCM3APO60318 1980 aa13.4□□□□□ -0.27
VCAN-212ENST00000515397 SYNRGQ9UMZ2 1314 aa13.39□□□□□ -0.27
VCAN-212ENST00000515397 ASB14A6NK59 587 aa13.39□□□□□ -0.27
VCAN-212ENST00000515397 ADAMTS4O75173 837 aa13.39□□□□□ -0.27
VCAN-212ENST00000515397 ALDH5A1P51649 535 aaPredicted RBP13.39□□□□□ -0.27
VCAN-212ENST00000515397 RTP1P59025 263 aa13.39□□□□□ -0.27
VCAN-212ENST00000515397 TNFAIP2Q03169 654 aa13.39□□□□□ -0.27
VCAN-212ENST00000515397 TROAPQ12815 778 aa13.39□□□□□ -0.27
VCAN-212ENST00000515397 GRM4Q14833 912 aa13.39□□□□□ -0.27
VCAN-212ENST00000515397 SART3Q15020 963 aaKnown RBP13.39□□□□□ -0.27
VCAN-212ENST00000515397 KCNA10Q16322 511 aa13.39□□□□□ -0.27
VCAN-212ENST00000515397 ADCK5Q3MIX3 580 aa13.39□□□□□ -0.27
VCAN-212ENST00000515397 CASC1Q6TDU7 716 aa13.39□□□□□ -0.27
VCAN-212ENST00000515397 NFXL1Q6ZNB6 911 aa13.39□□□□□ -0.27
VCAN-212ENST00000515397 CATIPQ7Z7H3 387 aa13.39□□□□□ -0.27
VCAN-212ENST00000515397 RNF180Q86T96 592 aa13.39□□□□□ -0.27
VCAN-212ENST00000515397 FBXO11Q86XK2 927 aa13.39□□□□□ -0.27
VCAN-212ENST00000515397 CMTR1Q8N1G2 835 aaKnown RBP13.39□□□□□ -0.27
VCAN-212ENST00000515397 TAAR1Q96RJ0 339 aa13.39□□□□□ -0.27
VCAN-212ENST00000515397 PIGSQ96S52 555 aa13.39□□□□□ -0.27
VCAN-212ENST00000515397 RANBP2P49792 3224 aaKnown RBP13.39□□□□□ -0.27
VCAN-212ENST00000515397 ALPK3Q96L96 1907 aa13.39□□□□□ -0.27
VCAN-212ENST00000515397 WDR19Q8NEZ3 1342 aa13.39□□□□□ -0.27
VCAN-212ENST00000515397 DNAH12Q6ZR08 3092 aa13.38□□□□□ -0.27
VCAN-212ENST00000515397 SH2B2O14492 632 aaPredicted RBP13.38□□□□□ -0.27
VCAN-212ENST00000515397 DYNC1LI2O43237 492 aaPredicted RBP13.38□□□□□ -0.27
VCAN-212ENST00000515397 CYTH3O43739 400 aa13.38□□□□□ -0.27
VCAN-212ENST00000515397 C6orf222P0C671 652 aaPredicted RBP13.38□□□□□ -0.27
VCAN-212ENST00000515397 CPA1P15085 419 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms