RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 MSCO60682 206 aa9.78□□□□□ -0.84
PDGFC-205ENST00000506880 STAM2O75886 525 aa9.78□□□□□ -0.84
PDGFC-205ENST00000506880 FMNL1O95466 1100 aaPredicted RBP9.78□□□□□ -0.84
PDGFC-205ENST00000506880 SEC24BO95487 1268 aa9.78□□□□□ -0.84
PDGFC-205ENST00000506880 FOSP01100 380 aaPredicted RBP9.78□□□□□ -0.84
PDGFC-205ENST00000506880 ERCC3P19447 782 aa9.78□□□□□ -0.84
PDGFC-205ENST00000506880 LBX1P52954 281 aa9.78□□□□□ -0.84
PDGFC-205ENST00000506880 CDC37Q16543 378 aaPredicted RBP9.78□□□□□ -0.84
PDGFC-205ENST00000506880 MAMDC4Q6UXC1 1216 aa9.78□□□□□ -0.84
PDGFC-205ENST00000506880 CHRDL2Q6WN34 429 aa9.78□□□□□ -0.84
PDGFC-205ENST00000506880 OTOP1Q7RTM1 612 aa9.78□□□□□ -0.84
PDGFC-205ENST00000506880 NUP133Q8WUM0 1156 aa9.78□□□□□ -0.84
PDGFC-205ENST00000506880 TRIM47Q96LD4 638 aa9.78□□□□□ -0.84
PDGFC-205ENST00000506880 IWS1Q96ST2 819 aa9.78□□□□□ -0.84
PDGFC-205ENST00000506880 NUP88Q99567 741 aaPredicted RBP9.78□□□□□ -0.84
PDGFC-205ENST00000506880 KIF2CQ99661 725 aa9.78□□□□□ -0.84
PDGFC-205ENST00000506880 PAGR1Q9BTK6 254 aa9.78□□□□□ -0.84
PDGFC-205ENST00000506880 EHMT1Q9H9B1 1298 aa9.78□□□□□ -0.84
PDGFC-205ENST00000506880 GPCPD1Q9NPB8 672 aa9.78□□□□□ -0.84
PDGFC-205ENST00000506880 FBXO28Q9NVF7 368 aa9.78□□□□□ -0.84
PDGFC-205ENST00000506880 GJD2Q9UKL4 321 aa9.78□□□□□ -0.84
PDGFC-205ENST00000506880 SMCHD1A6NHR9 2005 aa9.78□□□□□ -0.84
PDGFC-205ENST00000506880 SYNGAP1Q96PV0 1343 aa9.78□□□□□ -0.84
PDGFC-205ENST00000506880 ASB14A6NK59 587 aa9.77□□□□□ -0.85
PDGFC-205ENST00000506880 DEXIO95424 95 aa9.77□□□□□ -0.85
PDGFC-205ENST00000506880 CALML3P27482 149 aa9.77□□□□□ -0.85
PDGFC-205ENST00000506880 GNA11P29992 359 aa9.77□□□□□ -0.85
PDGFC-205ENST00000506880 FUT2Q10981 343 aa9.77□□□□□ -0.85
PDGFC-205ENST00000506880 CHST3Q7LGC8 479 aa9.77□□□□□ -0.85
PDGFC-205ENST00000506880 NCAPG2Q86XI2 1143 aa9.77□□□□□ -0.85
PDGFC-205ENST00000506880 GTF3C6Q969F1 213 aa9.77□□□□□ -0.85
PDGFC-205ENST00000506880 SNX21Q969T3 373 aa9.77□□□□□ -0.85
PDGFC-205ENST00000506880 TRERF1Q96PN7 1200 aa9.77□□□□□ -0.85
PDGFC-205ENST00000506880 MMP19Q99542 508 aa9.77□□□□□ -0.85
PDGFC-205ENST00000506880 UPF3BQ9BZI7 483 aaKnown RBP9.77□□□□□ -0.85
PDGFC-205ENST00000506880 RNF146Q9NTX7 359 aa9.77□□□□□ -0.85
PDGFC-205ENST00000506880 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.77□□□□□ -0.85
PDGFC-205ENST00000506880 BRPF3Q9ULD4 1205 aa9.77□□□□□ -0.85
PDGFC-205ENST00000506880 ISY1Q9ULR0 285 aaKnown RBP9.77□□□□□ -0.85
PDGFC-205ENST00000506880 HPS5Q9UPZ3 1129 aa9.77□□□□□ -0.85
PDGFC-205ENST00000506880 PTPN22Q9Y2R2 807 aa9.77□□□□□ -0.85
PDGFC-205ENST00000506880 FRMPD2Q68DX3 1309 aaPredicted RBP9.77□□□□□ -0.85
PDGFC-205ENST00000506880 CNTNAP5Q8WYK1 1306 aa9.77□□□□□ -0.85
PDGFC-205ENST00000506880 KIAA0100Q14667 2235 aaKnown RBP9.76□□□□□ -0.85
PDGFC-205ENST00000506880 CYTH3O43739 400 aa9.76□□□□□ -0.85
PDGFC-205ENST00000506880 IGHA2P01877 340 aa9.76□□□□□ -0.85
PDGFC-205ENST00000506880 HMGCRP04035 888 aa9.76□□□□□ -0.85
PDGFC-205ENST00000506880 HSD17B4P51659 736 aa9.76□□□□□ -0.85
PDGFC-205ENST00000506880 AK2P54819 239 aa9.76□□□□□ -0.85
PDGFC-205ENST00000506880 UBXN2AP68543 259 aa9.76□□□□□ -0.85
PDGFC-205ENST00000506880 SSRP1Q08945 709 aaKnown RBP9.76□□□□□ -0.85
PDGFC-205ENST00000506880 APOBRQ0VD83 1088 aa9.76□□□□□ -0.85
PDGFC-205ENST00000506880 AP3B2Q13367 1082 aa9.76□□□□□ -0.85
PDGFC-205ENST00000506880 PLS1Q14651 629 aa9.76□□□□□ -0.85
PDGFC-205ENST00000506880 NTRK3Q16288 839 aa9.76□□□□□ -0.85
PDGFC-205ENST00000506880 PFKFB3Q16875 520 aaPredicted RBP9.76□□□□□ -0.85
PDGFC-205ENST00000506880 QRICH1Q2TAL8 776 aa9.76□□□□□ -0.85
PDGFC-205ENST00000506880 Q3C1V9 767 aa9.76□□□□□ -0.85
PDGFC-205ENST00000506880 TTBK2Q6IQ55 1244 aa9.76□□□□□ -0.85
PDGFC-205ENST00000506880 POTEEQ6S8J3 1075 aa9.76□□□□□ -0.85
PDGFC-205ENST00000506880 STAG2Q8N3U4 1231 aa9.76□□□□□ -0.85
PDGFC-205ENST00000506880 SRBD1Q8N5C6 995 aaKnown RBP9.76□□□□□ -0.85
PDGFC-205ENST00000506880 NKX2-3Q8TAU0 364 aa9.76□□□□□ -0.85
PDGFC-205ENST00000506880 CD99L2Q8TCZ2 262 aa9.76□□□□□ -0.85
PDGFC-205ENST00000506880 RAET1EQ8TD07 263 aa9.76□□□□□ -0.85
PDGFC-205ENST00000506880 MORC4Q8TE76 937 aa9.76□□□□□ -0.85
PDGFC-205ENST00000506880 CUL5Q93034 780 aa9.76□□□□□ -0.85
PDGFC-205ENST00000506880 ARMC5Q96C12 935 aa9.76□□□□□ -0.85
PDGFC-205ENST00000506880 DDX11Q96FC9 970 aa9.76□□□□□ -0.85
PDGFC-205ENST00000506880 INTS4Q96HW7 963 aaKnown RBP9.76□□□□□ -0.85
PDGFC-205ENST00000506880 FAM217BQ9NTX9 383 aaPredicted RBP9.76□□□□□ -0.85
PDGFC-205ENST00000506880 BARHL2Q9NY43 387 aa9.76□□□□□ -0.85
PDGFC-205ENST00000506880 PCDHA1Q9Y5I3 950 aa9.76□□□□□ -0.85
PDGFC-205ENST00000506880 SCG2P13521 617 aa9.75□□□□□ -0.85
PDGFC-205ENST00000506880 ADORA2AP29274 412 aa9.75□□□□□ -0.85
PDGFC-205ENST00000506880 DGKZQ13574 1117 aa9.75□□□□□ -0.85
PDGFC-205ENST00000506880 ZNF792Q3KQV3 632 aa9.75□□□□□ -0.85
PDGFC-205ENST00000506880 MFSD14CQ5VZR4 134 aa9.75□□□□□ -0.85
PDGFC-205ENST00000506880 KCNV1Q6PIU1 500 aa9.75□□□□□ -0.85
PDGFC-205ENST00000506880 DPP9Q86TI2 863 aa9.75□□□□□ -0.85
PDGFC-205ENST00000506880 ANKRD35Q8N283 1001 aa9.75□□□□□ -0.85
PDGFC-205ENST00000506880 FAM133AQ8N9E0 248 aa9.75□□□□□ -0.85
PDGFC-205ENST00000506880 LRRC2Q9BYS8 371 aa9.75□□□□□ -0.85
PDGFC-205ENST00000506880 ZMYND12Q9H0C1 365 aa9.75□□□□□ -0.85
PDGFC-205ENST00000506880 PORCNQ9H237 461 aa9.75□□□□□ -0.85
PDGFC-205ENST00000506880 R3HDMLQ9H3Y0 253 aa9.75□□□□□ -0.85
PDGFC-205ENST00000506880 SENP2Q9HC62 589 aa9.75□□□□□ -0.85
PDGFC-205ENST00000506880 RAVER2Q9HCJ3 691 aaKnown RBP9.75□□□□□ -0.85
PDGFC-205ENST00000506880 CYP39A1Q9NYL5 469 aa9.75□□□□□ -0.85
PDGFC-205ENST00000506880 TRIM17Q9Y577 477 aa9.75□□□□□ -0.85
PDGFC-205ENST00000506880 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.75□□□□□ -0.85
PDGFC-205ENST00000506880 FRMPD4Q14CM0 1322 aa9.75□□□□□ -0.85
PDGFC-205ENST00000506880 KIAA1217Q5T5P2 1943 aa9.74□□□□□ -0.85
PDGFC-205ENST00000506880 POTEB2H3BUK9 544 aa9.74□□□□□ -0.85
PDGFC-205ENST00000506880 GCOM1H8Y6P7 765 aaPredicted RBP9.74□□□□□ -0.85
PDGFC-205ENST00000506880 MAFGO15525 162 aa9.74□□□□□ -0.85
PDGFC-205ENST00000506880 POLR2MP0CAP2 368 aa9.74□□□□□ -0.85
PDGFC-205ENST00000506880 GOLGA8HP0CJ92 632 aa9.74□□□□□ -0.85
PDGFC-205ENST00000506880 TGFB3P10600 412 aa9.74□□□□□ -0.85
PDGFC-205ENST00000506880 ALAS1P13196 640 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms