RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 SNX21Q969T3 373 aa7.87□□□□□ -1.15
USP48-208ENST00000479177 GMCL1Q96IK5 515 aa7.87□□□□□ -1.15
USP48-208ENST00000479177 ZBED3Q96IU2 234 aaPredicted RBP7.87□□□□□ -1.15
USP48-208ENST00000479177 RNF181Q9P0P0 153 aa7.87□□□□□ -1.15
USP48-208ENST00000479177 ARPP21Q9UBL0 812 aaPredicted RBP7.87□□□□□ -1.15
USP48-208ENST00000479177 ANAPC4Q9UJX5 808 aa7.87□□□□□ -1.15
USP48-208ENST00000479177 HDAC9Q9UKV0 1011 aa7.87□□□□□ -1.15
USP48-208ENST00000479177 ZMIZ1Q9ULJ6 1067 aa7.87□□□□□ -1.15
USP48-208ENST00000479177 COL2A1P02458 1487 aaPredicted RBP7.87□□□□□ -1.15
USP48-208ENST00000479177 NEDD4P46934 1319 aa7.86□□□□□ -1.15
USP48-208ENST00000479177 CYP2D7A0A087X1C5 515 aa7.86□□□□□ -1.15
USP48-208ENST00000479177 SHTN1A0MZ66 631 aa7.86□□□□□ -1.15
USP48-208ENST00000479177 E7EWF7 191 aa7.86□□□□□ -1.15
USP48-208ENST00000479177 M0R2N6 131 aa7.86□□□□□ -1.15
USP48-208ENST00000479177 ZNF213O14771 459 aa7.86□□□□□ -1.15
USP48-208ENST00000479177 OIP5O43482 229 aa7.86□□□□□ -1.15
USP48-208ENST00000479177 CYP2D6P10635 497 aa7.86□□□□□ -1.15
USP48-208ENST00000479177 CPA1P15085 419 aa7.86□□□□□ -1.15
USP48-208ENST00000479177 PSMA5P28066 241 aa7.86□□□□□ -1.15
USP48-208ENST00000479177 MMP14P50281 582 aa7.86□□□□□ -1.15
USP48-208ENST00000479177 NEK4P51957 841 aa7.86□□□□□ -1.15
USP48-208ENST00000479177 RBM5P52756 815 aaKnown RBP eCLIP7.86□□□□□ -1.15
USP48-208ENST00000479177 GPR162Q16538 588 aa7.86□□□□□ -1.15
USP48-208ENST00000479177 C9orf131Q5VYM1 1079 aa7.86□□□□□ -1.15
USP48-208ENST00000479177 FOXR1Q6PIV2 292 aa7.86□□□□□ -1.15
USP48-208ENST00000479177 BLOC1S2Q6QNY1 142 aa7.86□□□□□ -1.15
USP48-208ENST00000479177 MAPKAPK5Q8IW41 473 aa7.86□□□□□ -1.15
USP48-208ENST00000479177 STK32AQ8WU08 396 aa7.86□□□□□ -1.15
USP48-208ENST00000479177 TGFBRAP1Q8WUH2 860 aa7.86□□□□□ -1.15
USP48-208ENST00000479177 STAG1Q8WVM7 1258 aa7.86□□□□□ -1.15
USP48-208ENST00000479177 DPF2Q92785 391 aa7.86□□□□□ -1.15
USP48-208ENST00000479177 TTC14Q96N46 770 aa7.86□□□□□ -1.15
USP48-208ENST00000479177 NUCKS1Q9H1E3 243 aaKnown RBP7.86□□□□□ -1.15
USP48-208ENST00000479177 DDX4Q9NQI0 724 aaKnown RBP7.86□□□□□ -1.15
USP48-208ENST00000479177 USP40Q9NVE5 1235 aa7.86□□□□□ -1.15
USP48-208ENST00000479177 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.86□□□□□ -1.15
USP48-208ENST00000479177 TACC3Q9Y6A5 838 aa7.86□□□□□ -1.15
USP48-208ENST00000479177 UTRNP46939 3433 aa7.85□□□□□ -1.15
USP48-208ENST00000479177 SHISA8B8ZZ34 492 aa7.85□□□□□ -1.15
USP48-208ENST00000479177 SMIM22K7EJ46 135 aa7.85□□□□□ -1.15
USP48-208ENST00000479177 GRIN3BO60391 1043 aa7.85□□□□□ -1.15
USP48-208ENST00000479177 RPS6KB1P23443 525 aa7.85□□□□□ -1.15
USP48-208ENST00000479177 NOS2P35228 1153 aa7.85□□□□□ -1.15
USP48-208ENST00000479177 NFIAQ12857 509 aa7.85□□□□□ -1.15
USP48-208ENST00000479177 UBAP2LQ14157 1087 aaKnown RBP7.85□□□□□ -1.15
USP48-208ENST00000479177 DLGAP5Q15398 846 aa7.85□□□□□ -1.15
USP48-208ENST00000479177 AKNAD1Q5T1N1 836 aa7.85□□□□□ -1.15
USP48-208ENST00000479177 C12orf60Q5U649 245 aa7.85□□□□□ -1.15
USP48-208ENST00000479177 C1orf229Q6ZS94 237 aaPredicted RBP7.85□□□□□ -1.15
USP48-208ENST00000479177 RUFY3Q7L099 469 aa7.85□□□□□ -1.15
USP48-208ENST00000479177 HSCBQ8IWL3 235 aa7.85□□□□□ -1.15
USP48-208ENST00000479177 MB21D2Q8IYB1 491 aaPredicted RBP7.85□□□□□ -1.15
USP48-208ENST00000479177 GPC2Q8N158 579 aa7.85□□□□□ -1.15
USP48-208ENST00000479177 SCG3Q8WXD2 468 aaKnown RBP7.85□□□□□ -1.15
USP48-208ENST00000479177 IPO9Q96P70 1041 aaKnown RBP7.85□□□□□ -1.15
USP48-208ENST00000479177 NEK1Q96PY6 1258 aa7.85□□□□□ -1.15
USP48-208ENST00000479177 HINFPQ9BQA5 517 aa7.85□□□□□ -1.15
USP48-208ENST00000479177 IDI2Q9BXS1 227 aa7.85□□□□□ -1.15
USP48-208ENST00000479177 OSBPL5Q9H0X9 879 aaPredicted RBP7.85□□□□□ -1.15
USP48-208ENST00000479177 MCM9Q9NXL9 1143 aa7.85□□□□□ -1.15
USP48-208ENST00000479177 SAP30BPQ9UHR5 308 aaKnown RBP7.85□□□□□ -1.15
USP48-208ENST00000479177 NOVA2Q9UNW9 492 aaKnown RBP7.85□□□□□ -1.15
USP48-208ENST00000479177 ZNF232Q9UNY5 417 aa7.85□□□□□ -1.15
USP48-208ENST00000479177 CYP46A1Q9Y6A2 500 aa7.85□□□□□ -1.15
USP48-208ENST00000479177 GJA3Q9Y6H8 435 aa7.85□□□□□ -1.15
USP48-208ENST00000479177 MYH8P13535 1937 aa7.85□□□□□ -1.15
USP48-208ENST00000479177 WDR19Q8NEZ3 1342 aa7.84□□□□□ -1.15
USP48-208ENST00000479177 MINDY4BA8MYZ0 360 aa7.84□□□□□ -1.15
USP48-208ENST00000479177 EML1O00423 815 aa7.84□□□□□ -1.15
USP48-208ENST00000479177 ORC4O43929 436 aa7.84□□□□□ -1.15
USP48-208ENST00000479177 HMGB1P09429 215 aaKnown RBP7.84□□□□□ -1.15
USP48-208ENST00000479177 FGRP09769 529 aa7.84□□□□□ -1.15
USP48-208ENST00000479177 PCP11498 1178 aaKnown RBP7.84□□□□□ -1.15
USP48-208ENST00000479177 MX2P20592 715 aa7.84□□□□□ -1.15
USP48-208ENST00000479177 CACNB3P54284 484 aa7.84□□□□□ -1.15
USP48-208ENST00000479177 ANTXR2P58335 489 aa7.84□□□□□ -1.15
USP48-208ENST00000479177 EXOSC10Q01780 885 aaKnown RBP7.84□□□□□ -1.15
USP48-208ENST00000479177 PICALMQ13492 652 aa7.84□□□□□ -1.15
USP48-208ENST00000479177 BECN1Q14457 450 aa7.84□□□□□ -1.15
USP48-208ENST00000479177 TEAD4Q15561 434 aa7.84□□□□□ -1.15
USP48-208ENST00000479177 RALYLQ86SE5 291 aaKnown RBP7.84□□□□□ -1.15
USP48-208ENST00000479177 NCOA7Q8NI08 942 aa7.84□□□□□ -1.15
USP48-208ENST00000479177 PRMT6Q96LA8 375 aaPredicted RBP7.84□□□□□ -1.15
USP48-208ENST00000479177 TCEANC2Q96MN5 208 aa7.84□□□□□ -1.15
USP48-208ENST00000479177 RNF41Q9H4P4 317 aaPredicted RBP7.84□□□□□ -1.15
USP48-208ENST00000479177 TDRD3Q9H7E2 651 aaKnown RBP7.84□□□□□ -1.15
USP48-208ENST00000479177 CNNM2Q9H8M5 875 aa7.84□□□□□ -1.15
USP48-208ENST00000479177 MYOZ2Q9NPC6 264 aa7.84□□□□□ -1.15
USP48-208ENST00000479177 PDRG1Q9NUG6 133 aa7.84□□□□□ -1.15
USP48-208ENST00000479177 GPRC5DQ9NZD1 345 aa7.84□□□□□ -1.15
USP48-208ENST00000479177 ZNF70Q9UC06 446 aaPredicted RBP7.84□□□□□ -1.15
USP48-208ENST00000479177 HCN4Q9Y3Q4 1203 aa7.84□□□□□ -1.15
USP48-208ENST00000479177 CNTNAP1P78357 1384 aa7.84□□□□□ -1.16
USP48-208ENST00000479177 ATRNL1Q5VV63 1379 aa7.84□□□□□ -1.16
USP48-208ENST00000479177 GREB1LQ9C091 1923 aaPredicted RBP7.84□□□□□ -1.16
USP48-208ENST00000479177 CLRN2A0PK11 232 aa7.83□□□□□ -1.16
USP48-208ENST00000479177 B4E1Z4 1266 aa7.83□□□□□ -1.16
USP48-208ENST00000479177 PRC1O43663 620 aa7.83□□□□□ -1.16
USP48-208ENST00000479177 PPP1R12BO60237 982 aaPredicted RBP7.83□□□□□ -1.16
USP48-208ENST00000479177 ENTPD3O75355 529 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms