RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 PWP2Q15269 919 aaKnown RBP13.98□□□□□ -0.17
SYNE1-221ENST00000472563 CCDC144BQ3MJ40 725 aa13.98□□□□□ -0.17
SYNE1-221ENST00000472563 C1orf53Q5VUE5 145 aa13.98□□□□□ -0.17
SYNE1-221ENST00000472563 ADGRF4Q8IZF3 695 aa13.98□□□□□ -0.17
SYNE1-221ENST00000472563 RGS22Q8NE09 1264 aa13.98□□□□□ -0.17
SYNE1-221ENST00000472563 MORC4Q8TE76 937 aa13.98□□□□□ -0.17
SYNE1-221ENST00000472563 LENG1Q96BZ8 264 aaPredicted RBP13.98□□□□□ -0.17
SYNE1-221ENST00000472563 GDF15Q99988 308 aa13.98□□□□□ -0.17
SYNE1-221ENST00000472563 TSEN34Q9BSV6 310 aaKnown RBP13.98□□□□□ -0.17
SYNE1-221ENST00000472563 MAF1Q9H063 256 aa13.98□□□□□ -0.17
SYNE1-221ENST00000472563 LSG1Q9H089 658 aaKnown RBP13.98□□□□□ -0.17
SYNE1-221ENST00000472563 CPVLQ9H3G5 476 aa13.98□□□□□ -0.17
SYNE1-221ENST00000472563 ADD3Q9UEY8 706 aaKnown RBP13.98□□□□□ -0.17
SYNE1-221ENST00000472563 SYNRGQ9UMZ2 1314 aa13.97□□□□□ -0.17
SYNE1-221ENST00000472563 RANBP2P49792 3224 aaKnown RBP13.97□□□□□ -0.17
SYNE1-221ENST00000472563 A0A1W2PPC1 479 aa13.97□□□□□ -0.17
SYNE1-221ENST00000472563 IFIT3O14879 490 aaKnown RBP13.97□□□□□ -0.17
SYNE1-221ENST00000472563 SYN1P17600 705 aa13.97□□□□□ -0.17
SYNE1-221ENST00000472563 SART3Q15020 963 aaKnown RBP13.97□□□□□ -0.17
SYNE1-221ENST00000472563 SNX17Q15036 470 aa13.97□□□□□ -0.17
SYNE1-221ENST00000472563 CDC37Q16543 378 aaPredicted RBP13.97□□□□□ -0.17
SYNE1-221ENST00000472563 SLC39A5Q6ZMH5 540 aa13.97□□□□□ -0.17
SYNE1-221ENST00000472563 RNF207Q6ZRF8 634 aa13.97□□□□□ -0.17
SYNE1-221ENST00000472563 STOX1Q6ZVD7 989 aa13.97□□□□□ -0.17
SYNE1-221ENST00000472563 SKAP1Q86WV1 359 aa13.97□□□□□ -0.17
SYNE1-221ENST00000472563 ERICH2A1L162 156 aa13.96□□□□□ -0.17
SYNE1-221ENST00000472563 PTPDC1A2A3K4 754 aa13.96□□□□□ -0.17
SYNE1-221ENST00000472563 KLRF2D3W0D1 207 aa13.96□□□□□ -0.17
SYNE1-221ENST00000472563 CST5P28325 142 aaPredicted RBP13.96□□□□□ -0.17
SYNE1-221ENST00000472563 BMP8BP34820 402 aa13.96□□□□□ -0.17
SYNE1-221ENST00000472563 GJA9P57773 515 aa13.96□□□□□ -0.17
SYNE1-221ENST00000472563 RTP1P59025 263 aa13.96□□□□□ -0.17
SYNE1-221ENST00000472563 NKX3-2P78367 333 aa13.96□□□□□ -0.17
SYNE1-221ENST00000472563 CCSAPQ6IQ19 270 aaPredicted RBP13.96□□□□□ -0.17
SYNE1-221ENST00000472563 MB21D2Q8IYB1 491 aaPredicted RBP13.96□□□□□ -0.17
SYNE1-221ENST00000472563 KLHDC9Q8NEP7 349 aa13.96□□□□□ -0.17
SYNE1-221ENST00000472563 FERMT2Q96AC1 680 aa13.96□□□□□ -0.17
SYNE1-221ENST00000472563 CCDC136Q96JN2 1154 aa13.96□□□□□ -0.17
SYNE1-221ENST00000472563 PURBQ96QR8 312 aaKnown RBP13.96□□□□□ -0.17
SYNE1-221ENST00000472563 UPF3AQ9H1J1 476 aaKnown RBP13.96□□□□□ -0.17
SYNE1-221ENST00000472563 JMJD4Q9H9V9 463 aa13.96□□□□□ -0.17
SYNE1-221ENST00000472563 SPC25Q9HBM1 224 aa13.96□□□□□ -0.17
SYNE1-221ENST00000472563 MYH4Q9Y623 1939 aa13.96□□□□□ -0.18
SYNE1-221ENST00000472563 ABCB11O95342 1321 aa13.95□□□□□ -0.18
SYNE1-221ENST00000472563 PALM3A6NDB9 673 aaPredicted RBP13.95□□□□□ -0.18
SYNE1-221ENST00000472563 MOXD2PA6NHM9 499 aa13.95□□□□□ -0.18
SYNE1-221ENST00000472563 ADCY6O43306 1168 aa13.95□□□□□ -0.18
SYNE1-221ENST00000472563 DHX16O60231 1041 aaKnown RBP13.95□□□□□ -0.18
SYNE1-221ENST00000472563 FXR1P51114 621 aaKnown RBP eCLIP13.95□□□□□ -0.18
SYNE1-221ENST00000472563 ACLYP53396 1101 aa13.95□□□□□ -0.18
SYNE1-221ENST00000472563 RPS6P62753 249 aaKnown RBP13.95□□□□□ -0.18
SYNE1-221ENST00000472563 TNFAIP2Q03169 654 aa13.95□□□□□ -0.18
SYNE1-221ENST00000472563 WTAPQ15007 396 aa13.95□□□□□ -0.18
SYNE1-221ENST00000472563 QRICH1Q2TAL8 776 aa13.95□□□□□ -0.18
SYNE1-221ENST00000472563 IQSEC1Q6DN90 963 aa13.95□□□□□ -0.18
SYNE1-221ENST00000472563 SLC30A10Q6XR72 485 aa13.95□□□□□ -0.18
SYNE1-221ENST00000472563 STAG2Q8N3U4 1231 aa13.95□□□□□ -0.18
SYNE1-221ENST00000472563 IGDCC4Q8TDY8 1250 aa13.95□□□□□ -0.18
SYNE1-221ENST00000472563 MTA3Q9BTC8 594 aa13.95□□□□□ -0.18
SYNE1-221ENST00000472563 VTA1Q9NP79 307 aa13.95□□□□□ -0.18
SYNE1-221ENST00000472563 ANO2Q9NQ90 1003 aa13.95□□□□□ -0.18
SYNE1-221ENST00000472563 MAD2L2Q9UI95 211 aa13.95□□□□□ -0.18
SYNE1-221ENST00000472563 ATP11BQ9Y2G3 1177 aa13.95□□□□□ -0.18
SYNE1-221ENST00000472563 A0A1W2PQ45 241 aaPredicted RBP13.94□□□□□ -0.18
SYNE1-221ENST00000472563 A0A1W2PQY0 241 aa13.94□□□□□ -0.18
SYNE1-221ENST00000472563 C6orf222P0C671 652 aaPredicted RBP13.94□□□□□ -0.18
SYNE1-221ENST00000472563 CALML3P27482 149 aa13.94□□□□□ -0.18
SYNE1-221ENST00000472563 MAGEA10P43363 369 aaPredicted RBP13.94□□□□□ -0.18
SYNE1-221ENST00000472563 ALDH5A1P51649 535 aaPredicted RBP13.94□□□□□ -0.18
SYNE1-221ENST00000472563 ANTXR2P58335 489 aa13.94□□□□□ -0.18
SYNE1-221ENST00000472563 TROAPQ12815 778 aa13.94□□□□□ -0.18
SYNE1-221ENST00000472563 GRM4Q14833 912 aa13.94□□□□□ -0.18
SYNE1-221ENST00000472563 NECTIN1Q15223 517 aa13.94□□□□□ -0.18
SYNE1-221ENST00000472563 KCNA10Q16322 511 aa13.94□□□□□ -0.18
SYNE1-221ENST00000472563 USH1GQ495M9 461 aa13.94□□□□□ -0.18
SYNE1-221ENST00000472563 TRIM60Q495X7 471 aa13.94□□□□□ -0.18
SYNE1-221ENST00000472563 TMEM67Q5HYA8 995 aa13.94□□□□□ -0.18
SYNE1-221ENST00000472563 TAPT1Q6NXT6 567 aa13.94□□□□□ -0.18
SYNE1-221ENST00000472563 CHST3Q7LGC8 479 aa13.94□□□□□ -0.18
SYNE1-221ENST00000472563 FBXO11Q86XK2 927 aa13.94□□□□□ -0.18
SYNE1-221ENST00000472563 PCSK9Q8NBP7 692 aaKnown RBP13.94□□□□□ -0.18
SYNE1-221ENST00000472563 DNERQ8NFT8 737 aa13.94□□□□□ -0.18
SYNE1-221ENST00000472563 NUP133Q8WUM0 1156 aa13.94□□□□□ -0.18
SYNE1-221ENST00000472563 MTMR8Q96EF0 704 aa13.94□□□□□ -0.18
SYNE1-221ENST00000472563 MPHOSPH6Q99547 160 aaKnown RBP13.94□□□□□ -0.18
SYNE1-221ENST00000472563 SENP2Q9HC62 589 aa13.94□□□□□ -0.18
SYNE1-221ENST00000472563 VAT1LQ9HCJ6 419 aa13.94□□□□□ -0.18
SYNE1-221ENST00000472563 GNEQ9Y223 722 aaKnown RBP13.94□□□□□ -0.18
SYNE1-221ENST00000472563 DDX49Q9Y6V7 483 aaKnown RBP13.94□□□□□ -0.18
SYNE1-221ENST00000472563 COL11A1P12107 1806 aaPredicted RBP13.94□□□□□ -0.18
SYNE1-221ENST00000472563 MYADML2A6NDP7 307 aa13.93□□□□□ -0.18
SYNE1-221ENST00000472563 SLC27A2O14975 620 aa13.93□□□□□ -0.18
SYNE1-221ENST00000472563 CDC45O75419 566 aa13.93□□□□□ -0.18
SYNE1-221ENST00000472563 EDNRBP24530 442 aa13.93□□□□□ -0.18
SYNE1-221ENST00000472563 GNASQ5JWF2 1037 aa13.93□□□□□ -0.18
SYNE1-221ENST00000472563 CREB3L3Q68CJ9 461 aa13.93□□□□□ -0.18
SYNE1-221ENST00000472563 CASC1Q6TDU7 716 aa13.93□□□□□ -0.18
SYNE1-221ENST00000472563 NOL8Q76FK4 1167 aaKnown RBP13.93□□□□□ -0.18
SYNE1-221ENST00000472563 EEPD1Q7L9B9 569 aa13.93□□□□□ -0.18
SYNE1-221ENST00000472563 CATIPQ7Z7H3 387 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms