RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 MTMR9Q96QG7 549 aa22.71■■□□□ 1.23
USP39-204ENST00000409766 TRIM34Q9BYJ4 488 aa22.71■■□□□ 1.23
USP39-204ENST00000409766 A0A1B0GTH6 734 aa22.7■■□□□ 1.23
USP39-204ENST00000409766 CLK2P49760 499 aaKnown RBP22.7■■□□□ 1.23
USP39-204ENST00000409766 GRIPAP1Q4V328 841 aa22.7■■□□□ 1.23
USP39-204ENST00000409766 CABP7Q86V35 215 aa22.7■■□□□ 1.23
USP39-204ENST00000409766 POTEDQ86YR6 584 aa22.7■■□□□ 1.23
USP39-204ENST00000409766 IGSF22Q8N9C0 903 aa22.7■■□□□ 1.23
USP39-204ENST00000409766 DCAF4Q8WV16 495 aa22.7■■□□□ 1.23
USP39-204ENST00000409766 TMX1Q9H3N1 280 aa22.7■■□□□ 1.23
USP39-204ENST00000409766 CUEDC2Q9H467 287 aa22.7■■□□□ 1.23
USP39-204ENST00000409766 DYNC1I1O14576 645 aa22.7■■□□□ 1.22
USP39-204ENST00000409766 GTF2F1P35269 517 aaKnown RBP eCLIP22.7■■□□□ 1.22
USP39-204ENST00000409766 SEPT2Q15019 361 aa22.7■■□□□ 1.22
USP39-204ENST00000409766 NYAP1Q6ZVC0 841 aa22.7■■□□□ 1.22
USP39-204ENST00000409766 TMEM179Q6ZVK1 233 aa22.7■■□□□ 1.22
USP39-204ENST00000409766 TTLL6Q8N841 843 aa22.7■■□□□ 1.22
USP39-204ENST00000409766 CTNND2Q9UQB3 1225 aa22.7■■□□□ 1.22
USP39-204ENST00000409766 COL2A1P02458 1487 aaPredicted RBP22.7■■□□□ 1.22
USP39-204ENST00000409766 NRDCO43847 1150 aa22.69■■□□□ 1.22
USP39-204ENST00000409766 TECP42680 631 aa22.69■■□□□ 1.22
USP39-204ENST00000409766 E4F1Q66K89 784 aaPredicted RBP22.69■■□□□ 1.22
USP39-204ENST00000409766 SPECC1LQ69YQ0 1117 aa22.69■■□□□ 1.22
USP39-204ENST00000409766 PLIN2Q99541 437 aa22.69■■□□□ 1.22
USP39-204ENST00000409766 MAGEF1Q9HAY2 307 aa22.69■■□□□ 1.22
USP39-204ENST00000409766 RWDD2AQ9UIY3 292 aa22.69■■□□□ 1.22
USP39-204ENST00000409766 PLCG1P19174 1290 aa22.69■■□□□ 1.22
USP39-204ENST00000409766 SLC1A4P43007 532 aa22.69■■□□□ 1.22
USP39-204ENST00000409766 KCNB1Q14721 858 aa22.69■■□□□ 1.22
USP39-204ENST00000409766 SLFN13Q68D06 897 aa22.69■■□□□ 1.22
USP39-204ENST00000409766 CCDC112Q8NEF3 446 aa22.69■■□□□ 1.22
USP39-204ENST00000409766 CUL5Q93034 780 aa22.69■■□□□ 1.22
USP39-204ENST00000409766 TRMT1Q9NXH9 659 aaKnown RBP22.69■■□□□ 1.22
USP39-204ENST00000409766 ARFGEF1Q9Y6D6 1849 aa22.68■■□□□ 1.22
USP39-204ENST00000409766 KLRC4O43908 158 aa22.68■■□□□ 1.22
USP39-204ENST00000409766 ICA1Q05084 483 aa22.68■■□□□ 1.22
USP39-204ENST00000409766 UBE2SQ16763 222 aa22.68■■□□□ 1.22
USP39-204ENST00000409766 CCDC93Q567U6 631 aa22.68■■□□□ 1.22
USP39-204ENST00000409766 RTKN2Q8IZC4 609 aa22.68■■□□□ 1.22
USP39-204ENST00000409766 MMTAG2Q9BU76 263 aaKnown RBP22.68■■□□□ 1.22
USP39-204ENST00000409766 SLC37A4O43826 429 aa22.67■■□□□ 1.22
USP39-204ENST00000409766 TDP2O95551 362 aa22.67■■□□□ 1.22
USP39-204ENST00000409766 MRPL12P52815 198 aaKnown RBP22.67■■□□□ 1.22
USP39-204ENST00000409766 PAK1Q13153 545 aa22.67■■□□□ 1.22
USP39-204ENST00000409766 SEMA3FQ13275 785 aa22.67■■□□□ 1.22
USP39-204ENST00000409766 CALCRLQ16602 461 aa22.67■■□□□ 1.22
USP39-204ENST00000409766 ABCB5Q2M3G0 1257 aa22.67■■□□□ 1.22
USP39-204ENST00000409766 PSMD1Q99460 953 aa22.67■■□□□ 1.22
USP39-204ENST00000409766 GDAQ9Y2T3 454 aa22.67■■□□□ 1.22
USP39-204ENST00000409766 GDF11O95390 407 aa22.67■■□□□ 1.22
USP39-204ENST00000409766 TXKP42681 527 aa22.67■■□□□ 1.22
USP39-204ENST00000409766 PRCPP42785 496 aa22.67■■□□□ 1.22
USP39-204ENST00000409766 PSTPIP2Q9H939 334 aa22.67■■□□□ 1.22
USP39-204ENST00000409766 ADD3Q9UEY8 706 aaKnown RBP22.67■■□□□ 1.22
USP39-204ENST00000409766 MYH7BA7E2Y1 1941 aa22.67■■□□□ 1.22
USP39-204ENST00000409766 PSDA5PKW4 1024 aaPredicted RBP22.66■■□□□ 1.22
USP39-204ENST00000409766 RAD21O60216 631 aa22.66■■□□□ 1.22
USP39-204ENST00000409766 TNNI2P48788 182 aa22.66■■□□□ 1.22
USP39-204ENST00000409766 FXR2P51116 673 aaKnown RBP eCLIP22.66■■□□□ 1.22
USP39-204ENST00000409766 PTPN14Q15678 1187 aa22.66■■□□□ 1.22
USP39-204ENST00000409766 KMT5BQ4FZB7 885 aa22.66■■□□□ 1.22
USP39-204ENST00000409766 PPP4R3AQ6IN85 833 aa22.66■■□□□ 1.22
USP39-204ENST00000409766 RSBN1LQ6PCB5 846 aaPredicted RBP22.66■■□□□ 1.22
USP39-204ENST00000409766 GMCL1P1Q8NEA9 526 aa22.66■■□□□ 1.22
USP39-204ENST00000409766 CTAGE1Q96RT6 745 aa22.66■■□□□ 1.22
USP39-204ENST00000409766 RIOK3O14730 519 aaKnown RBP22.65■■□□□ 1.22
USP39-204ENST00000409766 RHOBTB3O94955 611 aa22.65■■□□□ 1.22
USP39-204ENST00000409766 KCNA3P22001 575 aa22.65■■□□□ 1.22
USP39-204ENST00000409766 GOLGA8FQ08AF8 430 aa22.65■■□□□ 1.22
USP39-204ENST00000409766 GOLGA8DPQ0D2H9 430 aa22.65■■□□□ 1.22
USP39-204ENST00000409766 QRICH1Q2TAL8 776 aa22.65■■□□□ 1.22
USP39-204ENST00000409766 NELFBQ8WX92 580 aa22.65■■□□□ 1.22
USP39-204ENST00000409766 F5H6K3 240 aa22.65■■□□□ 1.22
USP39-204ENST00000409766 JAG1P78504 1218 aa22.65■■□□□ 1.22
USP39-204ENST00000409766 KLRC3Q07444 240 aa22.65■■□□□ 1.22
USP39-204ENST00000409766 CEP135Q66GS9 1140 aa22.65■■□□□ 1.22
USP39-204ENST00000409766 TMEM139Q8IV31 216 aa22.65■■□□□ 1.22
USP39-204ENST00000409766 ADSSL1Q8N142 457 aa22.65■■□□□ 1.22
USP39-204ENST00000409766 CSRNP1Q96S65 589 aa22.65■■□□□ 1.22
USP39-204ENST00000409766 GMLQ99445 158 aa22.65■■□□□ 1.22
USP39-204ENST00000409766 ATF5Q9Y2D1 282 aaPredicted RBP22.65■■□□□ 1.22
USP39-204ENST00000409766 PAXBP1Q9Y5B6 917 aa22.65■■□□□ 1.22
USP39-204ENST00000409766 SPDYE2BA6NHP3 402 aa22.64■■□□□ 1.22
USP39-204ENST00000409766 TEX33O43247 280 aa22.64■■□□□ 1.22
USP39-204ENST00000409766 COBLO75128 1261 aa22.64■■□□□ 1.22
USP39-204ENST00000409766 VIL1P09327 827 aaKnown RBP22.64■■□□□ 1.22
USP39-204ENST00000409766 SPDYE6P0CI01 402 aa22.64■■□□□ 1.22
USP39-204ENST00000409766 GMCL1Q96IK5 515 aa22.64■■□□□ 1.22
USP39-204ENST00000409766 COL4A5P29400 1685 aa22.64■■□□□ 1.21
USP39-204ENST00000409766 LRRC10BA6NIK2 292 aa22.64■■□□□ 1.21
USP39-204ENST00000409766 PBX1P40424 430 aa22.64■■□□□ 1.21
USP39-204ENST00000409766 PDIA5Q14554 519 aa22.64■■□□□ 1.21
USP39-204ENST00000409766 RRP1BQ14684 758 aaKnown RBP22.64■■□□□ 1.21
USP39-204ENST00000409766 CDC37Q16543 378 aaPredicted RBP22.64■■□□□ 1.21
USP39-204ENST00000409766 TC2NQ8N9U0 490 aa22.64■■□□□ 1.21
USP39-204ENST00000409766 GIMAP8Q8ND71 665 aaPredicted RBP22.64■■□□□ 1.21
USP39-204ENST00000409766 PPP1R13BQ96KQ4 1090 aa22.64■■□□□ 1.21
USP39-204ENST00000409766 TRIM9Q9C026 710 aa22.64■■□□□ 1.21
USP39-204ENST00000409766 GLT8D2Q9H1C3 349 aa22.64■■□□□ 1.21
USP39-204ENST00000409766 LRWD1Q9UFC0 647 aa22.64■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms