RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 DISC1Q9NRI5 854 aa28.52■■■□□ 2.16
SHOX2-201ENST00000389589 BCS1LQ9Y276 419 aa28.52■■■□□ 2.16
SHOX2-201ENST00000389589 ZNF280AP59817 542 aaPredicted RBP28.51■■■□□ 2.15
SHOX2-201ENST00000389589 ZNF830Q96NB3 372 aaPredicted RBP28.51■■■□□ 2.15
SHOX2-201ENST00000389589 ZBTB21Q9ULJ3 1066 aa28.51■■■□□ 2.15
SHOX2-201ENST00000389589 PCDHA1Q9Y5I3 950 aa28.51■■■□□ 2.15
SHOX2-201ENST00000389589 GTPBP6O43824 516 aaPredicted RBP28.5■■■□□ 2.15
SHOX2-201ENST00000389589 STAT6P42226 847 aa28.5■■■□□ 2.15
SHOX2-201ENST00000389589 SYDE2Q5VT97 1194 aa28.5■■■□□ 2.15
SHOX2-201ENST00000389589 A0A1W2PRG0 241 aa28.5■■■□□ 2.15
SHOX2-201ENST00000389589 TMX2Q9Y320 296 aa28.5■■■□□ 2.15
SHOX2-201ENST00000389589 NBPF9Q3BBW0 867 aa28.49■■■□□ 2.15
SHOX2-201ENST00000389589 RRAGBQ5VZM2 374 aa28.49■■■□□ 2.15
SHOX2-201ENST00000389589 NAP1L4Q99733 375 aaKnown RBP28.49■■■□□ 2.15
SHOX2-201ENST00000389589 AMNQ9BXJ7 453 aa28.49■■■□□ 2.15
SHOX2-201ENST00000389589 GOPCQ9HD26 462 aa28.49■■■□□ 2.15
SHOX2-201ENST00000389589 TMEM232C9JQI7 657 aa28.49■■■□□ 2.15
SHOX2-201ENST00000389589 ERCC5P28715 1186 aaPredicted RBP28.49■■■□□ 2.15
SHOX2-201ENST00000389589 MAP3K10Q02779 954 aa28.49■■■□□ 2.15
SHOX2-201ENST00000389589 KARSQ15046 597 aaKnown RBP28.49■■■□□ 2.15
SHOX2-201ENST00000389589 MCTP2Q6DN12 878 aa28.49■■■□□ 2.15
SHOX2-201ENST00000389589 PPP4R3AQ6IN85 833 aa28.49■■■□□ 2.15
SHOX2-201ENST00000389589 CCDC186Q7Z3E2 898 aa28.49■■■□□ 2.15
SHOX2-201ENST00000389589 PGAP2Q9UHJ9 254 aa28.49■■■□□ 2.15
SHOX2-201ENST00000389589 GOLGB1Q14789 3259 aaKnown RBP28.48■■■□□ 2.15
SHOX2-201ENST00000389589 IKQ13123 557 aaPredicted RBP28.48■■■□□ 2.15
SHOX2-201ENST00000389589 UBE2SQ16763 222 aa28.48■■■□□ 2.15
SHOX2-201ENST00000389589 RASSF8Q8NHQ8 419 aa28.48■■■□□ 2.15
SHOX2-201ENST00000389589 NUP88Q99567 741 aaPredicted RBP28.48■■■□□ 2.15
SHOX2-201ENST00000389589 CUEDC2Q9H467 287 aa28.48■■■□□ 2.15
SHOX2-201ENST00000389589 PTGS1P23219 599 aa28.47■■■□□ 2.15
SHOX2-201ENST00000389589 LMOD1P29536 600 aaPredicted RBP28.47■■■□□ 2.15
SHOX2-201ENST00000389589 CDC25AP30304 524 aa28.47■■■□□ 2.15
SHOX2-201ENST00000389589 CALCRLQ16602 461 aa28.47■■■□□ 2.15
SHOX2-201ENST00000389589 ENOX1Q8TC92 643 aaKnown RBP28.47■■■□□ 2.15
SHOX2-201ENST00000389589 MTMR9Q96QG7 549 aa28.47■■■□□ 2.15
SHOX2-201ENST00000389589 HSD3B7Q9H2F3 369 aa28.47■■■□□ 2.15
SHOX2-201ENST00000389589 ATAD5Q96QE3 1844 aa28.47■■■□□ 2.15
SHOX2-201ENST00000389589 MYL1P05976 194 aa28.47■■■□□ 2.15
SHOX2-201ENST00000389589 TNFAIP1Q13829 316 aa28.47■■■□□ 2.15
SHOX2-201ENST00000389589 POTEDQ86YR6 584 aa28.47■■■□□ 2.15
SHOX2-201ENST00000389589 SH2D4AQ9H788 454 aa28.47■■■□□ 2.15
SHOX2-201ENST00000389589 MAGEF1Q9HAY2 307 aa28.47■■■□□ 2.15
SHOX2-201ENST00000389589 GCFC2P16383 781 aaKnown RBP28.46■■■□□ 2.15
SHOX2-201ENST00000389589 CAP2P40123 477 aa28.46■■■□□ 2.15
SHOX2-201ENST00000389589 FBXO11Q86XK2 927 aa28.46■■■□□ 2.15
SHOX2-201ENST00000389589 FANCCQ00597 558 aa28.46■■■□□ 2.15
SHOX2-201ENST00000389589 TRAF1Q13077 416 aa28.46■■■□□ 2.15
SHOX2-201ENST00000389589 CABP7Q86V35 215 aa28.46■■■□□ 2.15
SHOX2-201ENST00000389589 DPF2Q92785 391 aa28.46■■■□□ 2.15
SHOX2-201ENST00000389589 KCNF1Q9H3M0 494 aa28.46■■■□□ 2.15
SHOX2-201ENST00000389589 RMND1Q9NWS8 449 aa28.46■■■□□ 2.15
SHOX2-201ENST00000389589 IFNKQ9P0W0 207 aa28.46■■■□□ 2.15
SHOX2-201ENST00000389589 PP2D1A8MPX8 630 aa28.45■■■□□ 2.14
SHOX2-201ENST00000389589 FXR2P51116 673 aaKnown RBP eCLIP28.45■■■□□ 2.14
SHOX2-201ENST00000389589 TMEM266Q2M3C6 531 aa28.45■■■□□ 2.14
SHOX2-201ENST00000389589 IGSF22Q8N9C0 903 aa28.45■■■□□ 2.14
SHOX2-201ENST00000389589 NRBP1Q9UHY1 535 aa28.45■■■□□ 2.14
SHOX2-201ENST00000389589 CBFA2T2O43439 604 aa28.44■■■□□ 2.14
SHOX2-201ENST00000389589 ECE1P42892 770 aa28.44■■■□□ 2.14
SHOX2-201ENST00000389589 MTRQ99707 1265 aa28.44■■■□□ 2.14
SHOX2-201ENST00000389589 RAB34Q9BZG1 259 aa28.44■■■□□ 2.14
SHOX2-201ENST00000389589 XPO4Q9C0E2 1151 aaKnown RBP28.44■■■□□ 2.14
SHOX2-201ENST00000389589 EDIL3O43854 480 aa28.44■■■□□ 2.14
SHOX2-201ENST00000389589 CASP1P29466 404 aa28.44■■■□□ 2.14
SHOX2-201ENST00000389589 STAT2P52630 851 aa28.44■■■□□ 2.14
SHOX2-201ENST00000389589 SEMA3FQ13275 785 aa28.44■■■□□ 2.14
SHOX2-201ENST00000389589 AP3B2Q13367 1082 aa28.44■■■□□ 2.14
SHOX2-201ENST00000389589 NAALADL2Q58DX5 795 aa28.44■■■□□ 2.14
SHOX2-201ENST00000389589 MIGA2Q7L4E1 593 aa28.44■■■□□ 2.14
SHOX2-201ENST00000389589 CDAN1Q8IWY9 1227 aa28.44■■■□□ 2.14
SHOX2-201ENST00000389589 ACER1Q8TDN7 264 aa28.44■■■□□ 2.14
SHOX2-201ENST00000389589 FANCLQ9NW38 375 aa28.44■■■□□ 2.14
SHOX2-201ENST00000389589 IMPACTQ9P2X3 320 aa28.44■■■□□ 2.14
SHOX2-201ENST00000389589 SHTN1A0MZ66 631 aa28.43■■■□□ 2.14
SHOX2-201ENST00000389589 FZD9O00144 591 aa28.43■■■□□ 2.14
SHOX2-201ENST00000389589 TDP2O95551 362 aa28.43■■■□□ 2.14
SHOX2-201ENST00000389589 TECP42680 631 aa28.43■■■□□ 2.14
SHOX2-201ENST00000389589 PTGER2P43116 358 aa28.43■■■□□ 2.14
SHOX2-201ENST00000389589 TEX2Q8IWB9 1127 aa28.43■■■□□ 2.14
SHOX2-201ENST00000389589 STAMQ92783 540 aa28.43■■■□□ 2.14
SHOX2-201ENST00000389589 ASNSP08243 561 aa28.42■■■□□ 2.14
SHOX2-201ENST00000389589 CUL4BQ13620 913 aa28.42■■■□□ 2.14
SHOX2-201ENST00000389589 PDIA5Q14554 519 aa28.42■■■□□ 2.14
SHOX2-201ENST00000389589 RASA3Q14644 834 aa28.42■■■□□ 2.14
SHOX2-201ENST00000389589 PRR12Q9ULL5 1215 aa28.42■■■□□ 2.14
SHOX2-201ENST00000389589 SLC37A4O43826 429 aa28.42■■■□□ 2.14
SHOX2-201ENST00000389589 TXKP42681 527 aa28.42■■■□□ 2.14
SHOX2-201ENST00000389589 FMR1Q06787 632 aaKnown RBP eCLIP28.42■■■□□ 2.14
SHOX2-201ENST00000389589 SPICE1Q8N0Z3 855 aa28.42■■■□□ 2.14
SHOX2-201ENST00000389589 BLZF1Q9H2G9 400 aa28.42■■■□□ 2.14
SHOX2-201ENST00000389589 USP11P51784 963 aa28.41■■■□□ 2.14
SHOX2-201ENST00000389589 VCPKMTQ9H867 229 aa28.41■■■□□ 2.14
SHOX2-201ENST00000389589 KBTBD4Q9NVX7 518 aa28.41■■■□□ 2.14
SHOX2-201ENST00000389589 DDX25Q9UHL0 483 aaKnown RBP28.41■■■□□ 2.14
SHOX2-201ENST00000389589 ATP1A3P13637 1013 aa28.41■■■□□ 2.14
SHOX2-201ENST00000389589 GMPSP49915 693 aaPredicted RBP28.41■■■□□ 2.14
SHOX2-201ENST00000389589 RASSF7Q02833 373 aa28.41■■■□□ 2.14
SHOX2-201ENST00000389589 CCDC144BQ3MJ40 725 aa28.41■■■□□ 2.14
SHOX2-201ENST00000389589 CHURC1Q8WUH1 139 aa28.41■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms