RNA–Protein interactions for RNA: ENST00000340437.8

CPSF7-201, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 1 (best) BASIC

Gene CPSF7, Length 3,695 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-201ENST00000340437 USP17L2Q6R6M4 530 aa16.08■□□□□ 0.17
CPSF7-201ENST00000340437 TBC1D7Q9P0N9 293 aa16.08■□□□□ 0.17
CPSF7-201ENST00000340437 RAB21Q9UL25 225 aa16.08■□□□□ 0.17
CPSF7-201ENST00000340437 ITIH6Q6UXX5 1313 aa16.08■□□□□ 0.16
CPSF7-201ENST00000340437 BAZ2AQ9UIF9 1905 aaKnown RBP16.08■□□□□ 0.16
CPSF7-201ENST00000340437 MOCS3O95396 460 aa16.08■□□□□ 0.16
CPSF7-201ENST00000340437 MYBL2P10244 700 aa16.08■□□□□ 0.16
CPSF7-201ENST00000340437 RPS8P62241 208 aaKnown RBP16.08■□□□□ 0.16
CPSF7-201ENST00000340437 FAM98CQ17RN3 349 aaKnown RBP16.08■□□□□ 0.16
CPSF7-201ENST00000340437 CCDC181Q5TID7 509 aa16.08■□□□□ 0.16
CPSF7-201ENST00000340437 PCDHA6Q9UN73 950 aa16.08■□□□□ 0.16
CPSF7-201ENST00000340437 PCDHA8Q9Y5H6 950 aa16.08■□□□□ 0.16
CPSF7-201ENST00000340437 BUB1O43683 1085 aa16.08■□□□□ 0.16
CPSF7-201ENST00000340437 RCAN1P53805 252 aa16.08■□□□□ 0.16
CPSF7-201ENST00000340437 TDRD12Q587J7 1177 aaKnown RBP16.08■□□□□ 0.16
CPSF7-201ENST00000340437 NBPF5PQ86XG9 351 aaPredicted RBP16.08■□□□□ 0.16
CPSF7-201ENST00000340437 SH3RF3Q8TEJ3 882 aaPredicted RBP16.08■□□□□ 0.16
CPSF7-201ENST00000340437 CDK5RAP3Q96JB5 506 aa16.08■□□□□ 0.16
CPSF7-201ENST00000340437 RASSF4Q9H2L5 321 aa16.08■□□□□ 0.16
CPSF7-201ENST00000340437 ZHX3Q9H4I2 956 aa16.08■□□□□ 0.16
CPSF7-201ENST00000340437 ADAMTSL3P82987 1691 aa16.08■□□□□ 0.16
CPSF7-201ENST00000340437 PDE2AO00408 941 aaPredicted RBP16.07■□□□□ 0.16
CPSF7-201ENST00000340437 NCK2O43639 380 aa16.07■□□□□ 0.16
CPSF7-201ENST00000340437 RCSD1Q6JBY9 416 aa16.07■□□□□ 0.16
CPSF7-201ENST00000340437 SND1Q7KZF4 910 aaKnown RBP eCLIP16.07■□□□□ 0.16
CPSF7-201ENST00000340437 LRRC15Q8TF66 581 aa16.07■□□□□ 0.16
CPSF7-201ENST00000340437 GJA10Q969M2 543 aa16.07■□□□□ 0.16
CPSF7-201ENST00000340437 NLRC4Q9NPP4 1024 aa16.07■□□□□ 0.16
CPSF7-201ENST00000340437 IL17RBQ9NRM6 502 aa16.07■□□□□ 0.16
CPSF7-201ENST00000340437 LRRC10BA6NIK2 292 aa16.07■□□□□ 0.16
CPSF7-201ENST00000340437 GGCXP38435 758 aa16.07■□□□□ 0.16
CPSF7-201ENST00000340437 DNM2P50570 870 aa16.07■□□□□ 0.16
CPSF7-201ENST00000340437 USP14P54578 494 aa16.07■□□□□ 0.16
CPSF7-201ENST00000340437 CCDC155Q8N6L0 562 aa16.07■□□□□ 0.16
CPSF7-201ENST00000340437 KLRF2D3W0D1 207 aa16.07■□□□□ 0.16
CPSF7-201ENST00000340437 CT47A1Q5JQC4 288 aaPredicted RBP16.07■□□□□ 0.16
CPSF7-201ENST00000340437 SOGA3Q5TF21 947 aa16.07■□□□□ 0.16
CPSF7-201ENST00000340437 RRAGAQ7L523 313 aa16.07■□□□□ 0.16
CPSF7-201ENST00000340437 AFAP1L1Q8TED9 768 aa16.07■□□□□ 0.16
CPSF7-201ENST00000340437 HNRNPLLQ8WVV9 542 aaKnown RBP16.07■□□□□ 0.16
CPSF7-201ENST00000340437 SECISBP2LQ93073 1101 aaKnown RBP16.07■□□□□ 0.16
CPSF7-201ENST00000340437 SMCO2A6NFE2 343 aa16.06■□□□□ 0.16
CPSF7-201ENST00000340437 AMPD2Q01433 879 aa16.06■□□□□ 0.16
CPSF7-201ENST00000340437 AMOTL1Q8IY63 956 aa16.06■□□□□ 0.16
CPSF7-201ENST00000340437 HDAC7Q8WUI4 952 aa16.06■□□□□ 0.16
CPSF7-201ENST00000340437 MTA3Q9BTC8 594 aa16.06■□□□□ 0.16
CPSF7-201ENST00000340437 BSDC1Q9NW68 430 aaPredicted RBP16.06■□□□□ 0.16
CPSF7-201ENST00000340437 TMEM260Q9NX78 707 aa16.06■□□□□ 0.16
CPSF7-201ENST00000340437 TRAPPC11Q7Z392 1133 aa16.06■□□□□ 0.16
CPSF7-201ENST00000340437 TMC4Q7Z404 712 aa16.06■□□□□ 0.16
CPSF7-201ENST00000340437 P2RX5Q93086 422 aa16.06■□□□□ 0.16
CPSF7-201ENST00000340437 PYM1Q9BRP8 204 aaKnown RBP16.06■□□□□ 0.16
CPSF7-201ENST00000340437 CAPN11Q9UMQ6 739 aa16.06■□□□□ 0.16
CPSF7-201ENST00000340437 F8W031 263 aaPredicted RBP16.06■□□□□ 0.16
CPSF7-201ENST00000340437 TRAPPC10P48553 1259 aa16.06■□□□□ 0.16
CPSF7-201ENST00000340437 TBC1D9BQ66K14 1250 aa16.06■□□□□ 0.16
CPSF7-201ENST00000340437 NLRP3Q96P20 1036 aa16.06■□□□□ 0.16
CPSF7-201ENST00000340437 IFIH1Q9BYX4 1025 aaKnown RBP16.06■□□□□ 0.16
CPSF7-201ENST00000340437 FRMPD2Q68DX3 1309 aaPredicted RBP16.05■□□□□ 0.16
CPSF7-201ENST00000340437 CYTH3O43739 400 aa16.05■□□□□ 0.16
CPSF7-201ENST00000340437 TUBB2AQ13885 445 aa16.05■□□□□ 0.16
CPSF7-201ENST00000340437 CCDC70Q6NSX1 233 aa16.05■□□□□ 0.16
CPSF7-201ENST00000340437 CACNA2D4Q7Z3S7 1137 aa16.05■□□□□ 0.16
CPSF7-201ENST00000340437 C4orf32Q8N8J7 132 aa16.05■□□□□ 0.16
CPSF7-201ENST00000340437 FAM71BQ8TC56 605 aa16.05■□□□□ 0.16
CPSF7-201ENST00000340437 TUBB2BQ9BVA1 445 aa16.05■□□□□ 0.16
CPSF7-201ENST00000340437 MAP9Q49MG5 647 aa16.05■□□□□ 0.16
CPSF7-201ENST00000340437 NFRKBQ6P4R8 1299 aa16.05■□□□□ 0.16
CPSF7-201ENST00000340437 COG1Q8WTW3 980 aa16.05■□□□□ 0.16
CPSF7-201ENST00000340437 DUSP9Q99956 384 aaKnown RBP16.05■□□□□ 0.16
CPSF7-201ENST00000340437 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.05■□□□□ 0.16
CPSF7-201ENST00000340437 COL1A1P02452 1464 aaPredicted RBP16.05■□□□□ 0.16
CPSF7-201ENST00000340437 PLEKHG2Q9H7P9 1386 aa16.05■□□□□ 0.16
CPSF7-201ENST00000340437 EEF1GP26641 437 aaKnown RBP16.05■□□□□ 0.16
CPSF7-201ENST00000340437 GRIK5Q16478 980 aa16.05■□□□□ 0.16
CPSF7-201ENST00000340437 MYO1AQ9UBC5 1043 aa16.05■□□□□ 0.16
CPSF7-201ENST00000340437 G3V3G9 751 aa16.04■□□□□ 0.16
CPSF7-201ENST00000340437 DCAF8Q5TAQ9 597 aa16.04■□□□□ 0.16
CPSF7-201ENST00000340437 ARL6IP4Q66PJ3 421 aaKnown RBP16.04■□□□□ 0.16
CPSF7-201ENST00000340437 EHD4Q9H223 541 aa16.04■□□□□ 0.16
CPSF7-201ENST00000340437 ARPP21Q9UBL0 812 aaPredicted RBP16.04■□□□□ 0.16
CPSF7-201ENST00000340437 EPHB6O15197 1021 aa16.04■□□□□ 0.16
CPSF7-201ENST00000340437 KLRC4O43908 158 aa16.04■□□□□ 0.16
CPSF7-201ENST00000340437 LDHBP07195 334 aaKnown RBP16.04■□□□□ 0.16
CPSF7-201ENST00000340437 EIF4A3P38919 411 aaKnown RBP16.04■□□□□ 0.16
CPSF7-201ENST00000340437 CACNB1Q02641 598 aaPredicted RBP16.04■□□□□ 0.16
CPSF7-201ENST00000340437 TTI2Q6NXR4 508 aa16.04■□□□□ 0.16
CPSF7-201ENST00000340437 RRP36Q96EU6 259 aaKnown RBP16.04■□□□□ 0.16
CPSF7-201ENST00000340437 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.04■□□□□ 0.16
CPSF7-201ENST00000340437 SELENOOQ9BVL4 669 aa16.04■□□□□ 0.16
CPSF7-201ENST00000340437 ATP8A2Q9NTI2 1148 aa16.04■□□□□ 0.16
CPSF7-201ENST00000340437 ECM29Q5VYK3 1845 aa16.04■□□□□ 0.16
CPSF7-201ENST00000340437 MYH6P13533 1939 aa16.04■□□□□ 0.16
CPSF7-201ENST00000340437 NID2Q14112 1375 aa16.04■□□□□ 0.16
CPSF7-201ENST00000340437 USO1O60763 962 aaKnown RBP16.04■□□□□ 0.16
CPSF7-201ENST00000340437 IFT81Q8WYA0 676 aa16.04■□□□□ 0.16
CPSF7-201ENST00000340437 TMEM47Q9BQJ4 181 aa16.04■□□□□ 0.16
CPSF7-201ENST00000340437 LRRC1Q9BTT6 524 aa16.04■□□□□ 0.16
CPSF7-201ENST00000340437 CAPN6Q9Y6Q1 641 aa16.04■□□□□ 0.16
CPSF7-201ENST00000340437 SRLQ86TD4 932 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms