RNA–Protein interactions for RNA: YNL288W

CAF40, Transcript of Component of the CCR4-NOT transcriptional complex, yeastyeast

Gene CAF40, Length 1,122 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF40YNL288W SET2P46995 733 aaKnown RBP6.09□□□□□ -1.43
CAF40YNL288W NPY1P53164 384 aa6.09□□□□□ -1.43
CAF40YNL288W AQR1P53943 586 aa6.09□□□□□ -1.43
CAF40YNL288W RNT1Q02555 471 aa6.09□□□□□ -1.43
CAF40YNL288W RPN9Q04062 393 aaKnown RBP6.09□□□□□ -1.43
CAF40YNL288W MFB1Q04922 465 aa6.09□□□□□ -1.43
CAF40YNL288W CIA1Q05583 330 aa6.09□□□□□ -1.43
CAF40YNL288W RSA3Q05942 220 aaKnown RBP6.09□□□□□ -1.43
CAF40YNL288W STE23Q06010 1027 aa6.09□□□□□ -1.43
CAF40YNL288W HBT1Q07653 1046 aaKnown RBP6.09□□□□□ -1.43
CAF40YNL288W FAB1P34756 2278 aa6.08□□□□□ -1.44
CAF40YNL288W HEM13P11353 328 aaKnown RBP6.08□□□□□ -1.44
CAF40YNL288W GAL11P19659 1081 aa6.08□□□□□ -1.44
CAF40YNL288W ILV6P25605 309 aaKnown RBP6.08□□□□□ -1.44
CAF40YNL288W TOM20P35180 183 aa6.08□□□□□ -1.44
CAF40YNL288W SRP72P38688 640 aaKnown RBP6.08□□□□□ -1.44
CAF40YNL288W GND1P38720 489 aaKnown RBP6.08□□□□□ -1.44
CAF40YNL288W BAT1P38891 393 aaKnown RBP6.08□□□□□ -1.44
CAF40YNL288W CCT2P39076 527 aaKnown RBP6.08□□□□□ -1.44
CAF40YNL288W SEC28P40509 296 aaKnown RBP6.08□□□□□ -1.44
CAF40YNL288W IME4P41833 600 aa6.08□□□□□ -1.44
CAF40YNL288W YFR018CP43599 363 aa6.08□□□□□ -1.44
CAF40YNL288W URB2P47108 1174 aa6.08□□□□□ -1.44
CAF40YNL288W SWC4P53201 476 aa6.08□□□□□ -1.44
CAF40YNL288W LSC1P53598 329 aaKnown RBP6.08□□□□□ -1.44
CAF40YNL288W VAC7P53950 1165 aa6.08□□□□□ -1.44
CAF40YNL288W TGL2P54857 326 aa6.08□□□□□ -1.44
CAF40YNL288W TFB2Q02939 513 aa6.08□□□□□ -1.44
CAF40YNL288W YDR131CQ03899 556 aa6.08□□□□□ -1.44
CAF40YNL288W RPC11Q04307 110 aaPredicted RBP6.08□□□□□ -1.44
CAF40YNL288W RRP15Q06511 250 aaPredicted RBP6.08□□□□□ -1.44
CAF40YNL288W HRK1Q08732 759 aaKnown RBP6.08□□□□□ -1.44
CAF40YNL288W SEM1O94742 89 aa6.07□□□□□ -1.44
CAF40YNL288W ARG4P04076 463 aaPredicted RBP6.07□□□□□ -1.44
CAF40YNL288W ILV2P07342 687 aaKnown RBP6.07□□□□□ -1.44
CAF40YNL288W MPH2P0CD99 609 aa6.07□□□□□ -1.44
CAF40YNL288W APA1P16550 321 aaKnown RBP6.07□□□□□ -1.44
CAF40YNL288W MF(ALPHA)2P32435 120 aa6.07□□□□□ -1.44
CAF40YNL288W SPS19P32573 292 aaKnown RBP6.07□□□□□ -1.44
CAF40YNL288W GDA1P32621 518 aa6.07□□□□□ -1.44
CAF40YNL288W BEM3P32873 1128 aa6.07□□□□□ -1.44
CAF40YNL288W PHO11P35842 467 aa6.07□□□□□ -1.44
CAF40YNL288W SRX1P36077 127 aa6.07□□□□□ -1.44
CAF40YNL288W MUD2P36084 527 aaKnown RBP6.07□□□□□ -1.44
CAF40YNL288W ETR1P38071 380 aa6.07□□□□□ -1.44
CAF40YNL288W YBR259WP38338 688 aa6.07□□□□□ -1.44
CAF40YNL288W PHO12P38693 467 aa6.07□□□□□ -1.44
CAF40YNL288W DBP8P38719 431 aa6.07□□□□□ -1.44
CAF40YNL288W YHI9P38765 294 aa6.07□□□□□ -1.44
CAF40YNL288W SPC97P38863 823 aa6.07□□□□□ -1.44
CAF40YNL288W MEF2P39677 819 aa6.07□□□□□ -1.44
CAF40YNL288W SSP120P39931 234 aaKnown RBP6.07□□□□□ -1.44
CAF40YNL288W ALG8P40351 577 aa6.07□□□□□ -1.44
CAF40YNL288W YGL108CP53139 140 aa6.07□□□□□ -1.44
CAF40YNL288W YNL058CP53947 316 aa6.07□□□□□ -1.44
CAF40YNL288W CCE1Q03702 353 aa6.07□□□□□ -1.44
CAF40YNL288W SPR28Q04921 423 aa6.07□□□□□ -1.44
CAF40YNL288W JIP5Q06214 492 aaPredicted RBP6.07□□□□□ -1.44
CAF40YNL288W BUD7Q08754 746 aa6.07□□□□□ -1.44
CAF40YNL288W SAM4Q08985 325 aaKnown RBP6.07□□□□□ -1.44
CAF40YNL288W GNT1Q12096 491 aa6.07□□□□□ -1.44
CAF40YNL288W GTT2Q12390 233 aa6.07□□□□□ -1.44
CAF40YNL288W NOP58Q12499 511 aaKnown RBP6.07□□□□□ -1.44
CAF40YNL288W SUC2P00724 532 aa6.06□□□□□ -1.44
CAF40YNL288W YKR104WP0CE69 306 aa6.06□□□□□ -1.44
CAF40YNL288W NSP1P14907 823 aaKnown RBP6.06□□□□□ -1.44
CAF40YNL288W HSP26P15992 214 aaKnown RBP RIP-Chip data6.06□□□□□ -1.44not detected
CAF40YNL288W AMD2P22580 549 aa6.06□□□□□ -1.44
CAF40YNL288W HRR25P29295 494 aaKnown RBP6.06□□□□□ -1.44
CAF40YNL288W BEM1P29366 551 aa6.06□□□□□ -1.44
CAF40YNL288W RML2P32611 393 aa6.06□□□□□ -1.44
CAF40YNL288W SET3P36124 751 aa6.06□□□□□ -1.44
CAF40YNL288W IML3P38265 245 aa6.06□□□□□ -1.44
CAF40YNL288W TAE1P38340 232 aa6.06□□□□□ -1.44
CAF40YNL288W CCT6P39079 546 aa6.06□□□□□ -1.44
CAF40YNL288W MNN1P39106 762 aa6.06□□□□□ -1.44
CAF40YNL288W GIP4P39732 760 aa6.06□□□□□ -1.44
CAF40YNL288W HAT2P39984 401 aa6.06□□□□□ -1.44
CAF40YNL288W YJL070CP40361 888 aa6.06□□□□□ -1.44
CAF40YNL288W GTS1P40956 396 aa6.06□□□□□ -1.44
CAF40YNL288W PET130P47065 347 aa6.06□□□□□ -1.44
CAF40YNL288W NPL3Q01560 414 aaKnown RBP RIP-Chip data6.06□□□□□ -1.44 RIP-Chip
CAF40YNL288W SPP2Q02521 185 aa6.06□□□□□ -1.44
CAF40YNL288W YPL113CQ02961 396 aa6.06□□□□□ -1.44
CAF40YNL288W SSY1Q03770 852 aa6.06□□□□□ -1.44
CAF40YNL288W BLS1Q06071 122 aa6.06□□□□□ -1.44
CAF40YNL288W VTA1Q06263 330 aa6.06□□□□□ -1.44
CAF40YNL288W YET3Q07451 203 aa6.06□□□□□ -1.44
CAF40YNL288W VHS3Q08438 674 aa6.06□□□□□ -1.44
CAF40YNL288W KCS1Q12494 1050 aa6.06□□□□□ -1.44
CAF40YNL288W RMD5Q12508 421 aa6.06□□□□□ -1.44
CAF40YNL288W CPA1P07258 411 aaKnown RBP6.05□□□□□ -1.44
CAF40YNL288W SSC1P0CS90 654 aaKnown RBP6.05□□□□□ -1.44
CAF40YNL288W GCY1P14065 312 aaKnown RBP RIP-Chip data6.05□□□□□ -1.44not detected
CAF40YNL288W AMD1P15274 810 aaKnown RBP6.05□□□□□ -1.44
CAF40YNL288W EPT1P22140 391 aa6.05□□□□□ -1.44
CAF40YNL288W PRO1P32264 428 aa6.05□□□□□ -1.44
CAF40YNL288W LTV1P34078 463 aa6.05□□□□□ -1.44
CAF40YNL288W SEA4P38164 1038 aa6.05□□□□□ -1.44
CAF40YNL288W IRR1P40541 1150 aa6.05□□□□□ -1.44
Retrieved 100 of 5,963 RNA–protein pairs in 51.8 ms