RNA–Protein interactions for RNA: YML029W

USA1, Transcript of Scaffold subunit of the Hrd1p ubiquitin ligase, yeastyeast

Gene USA1, Length 2,517 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USA1YML029W CLB1P24868 471 aa3.83□□□□□ -1.8
USA1YML029W ERG6P25087 383 aaKnown RBP3.83□□□□□ -1.8
USA1YML029W BEM1P29366 551 aa3.83□□□□□ -1.8
USA1YML029W MCM5P29496 775 aaKnown RBP3.83□□□□□ -1.8
USA1YML029W NUD1P32336 851 aa3.83□□□□□ -1.8
USA1YML029W SKT5P34226 696 aa3.83□□□□□ -1.8
USA1YML029W RIM2P38127 377 aa3.83□□□□□ -1.8
USA1YML029W YHR020WP38708 688 aaKnown RBP3.83□□□□□ -1.8
USA1YML029W MUP3P38734 546 aa3.83□□□□□ -1.8
USA1YML029W YEN1P40028 759 aa3.83□□□□□ -1.8
USA1YML029W SER33P40510 469 aa3.83□□□□□ -1.8
USA1YML029W MID1P41821 548 aa3.83□□□□□ -1.8
USA1YML029W MET12P46151 657 aa3.83□□□□□ -1.8
USA1YML029W SHY1P53266 389 aa3.83□□□□□ -1.8
USA1YML029W CWC24P53769 259 aa3.83□□□□□ -1.8
USA1YML029W SHE9Q04172 456 aa3.83□□□□□ -1.8
USA1YML029W HPT1Q04178 221 aaKnown RBP3.83□□□□□ -1.8
USA1YML029W CMR1Q12510 522 aaKnown RBP3.83□□□□□ -1.8
USA1YML029W NOT5Q12514 560 aaPredicted RBP3.83□□□□□ -1.8
USA1YML029W YGR161W-CQ3E744 92 aa3.83□□□□□ -1.8
USA1YML029W Q0182Q9ZZW1 134 aa3.83□□□□□ -1.8
USA1YML029W TY1A-DR4O74302 440 aa3.83□□□□□ -1.8
USA1YML029W TY1A-HP0C2I4 478 aaKnown RBP3.83□□□□□ -1.8
USA1YML029W YMR085WP0CF18 432 aa3.83□□□□□ -1.8
USA1YML029W TY1A-AP0CX57 440 aa3.83□□□□□ -1.8
USA1YML029W TY1A-PR1P0CX58 440 aa3.83□□□□□ -1.8
USA1YML029W TY1A-ORP0CX59 440 aa3.83□□□□□ -1.8
USA1YML029W TY1A-PR2P0CX60 440 aa3.83□□□□□ -1.8
USA1YML029W TY1A-DR5P0CX65 440 aa3.83□□□□□ -1.8
USA1YML029W TY1A-ER2P0CX66 440 aa3.83□□□□□ -1.8
USA1YML029W TY1A-GR3P0CX67 440 aa3.83□□□□□ -1.8
USA1YML029W TY1A-LR1P0CX68 440 aa3.83□□□□□ -1.8
USA1YML029W TY1A-MR2P0CX69 440 aa3.83□□□□□ -1.8
USA1YML029W LAT1P12695 482 aaKnown RBP3.83□□□□□ -1.8
USA1YML029W GLN4P13188 809 aaKnown RBP3.83□□□□□ -1.8
USA1YML029W NSP1P14907 823 aaKnown RBP3.83□□□□□ -1.8
USA1YML029W YCR090CP25654 182 aaKnown RBP3.83□□□□□ -1.8
USA1YML029W GCD11P32481 527 aaKnown RBP3.83□□□□□ -1.8
USA1YML029W NIP1P32497 812 aaKnown RBP3.83□□□□□ -1.8
USA1YML029W MRE11P32829 692 aa3.83□□□□□ -1.8
USA1YML029W FTH1P38310 465 aa3.83□□□□□ -1.8
USA1YML029W PHO89P38361 574 aa3.83□□□□□ -1.8
USA1YML029W MPT5P39016 859 aaKnown RBP RIP-Chip data3.83□□□□□ -1.8not detected
USA1YML029W GIM4P40005 111 aaKnown RBP3.83□□□□□ -1.8
USA1YML029W MRX1P40050 688 aa3.83□□□□□ -1.8
USA1YML029W HOS4P40480 1083 aa3.83□□□□□ -1.8
USA1YML029W TES1P41903 349 aaKnown RBP3.83□□□□□ -1.8
USA1YML029W FAR3P46671 204 aa3.83□□□□□ -1.8
USA1YML029W NUP85P46673 744 aa3.83□□□□□ -1.8
USA1YML029W TY1A-JR2P47099 440 aa3.83□□□□□ -1.8
USA1YML029W NAS6P50086 228 aa3.83□□□□□ -1.8
USA1YML029W AQR1P53943 586 aa3.83□□□□□ -1.8
USA1YML029W RHO3Q00245 231 aaKnown RBP3.83□□□□□ -1.8
USA1YML029W SMA1Q02651 245 aa3.83□□□□□ -1.8
USA1YML029W RNY1Q02933 434 aaKnown RBP3.83□□□□□ -1.8
USA1YML029W TY1A-DR1Q03856 440 aa3.83□□□□□ -1.8
USA1YML029W SPO20Q04359 397 aa3.83□□□□□ -1.8
USA1YML029W TY1A-ML1Q04706 440 aaKnown RBP3.83□□□□□ -1.8
USA1YML029W ARG7Q04728 441 aa3.83□□□□□ -1.8
USA1YML029W TY1A-BRQ12217 440 aa3.83□□□□□ -1.8
USA1YML029W ICT1Q12385 394 aa3.83□□□□□ -1.8
USA1YML029W TY1A-NL2Q12470 440 aa3.83□□□□□ -1.8
USA1YML029W TY1A-GR2Q12485 440 aa3.83□□□□□ -1.8
USA1YML029W SPT15P13393 240 aaKnown RBP3.82□□□□□ -1.8
USA1YML029W AMD1P15274 810 aaKnown RBP3.82□□□□□ -1.8
USA1YML029W SEC2P17065 759 aa3.82□□□□□ -1.8
USA1YML029W DEP1P31385 405 aa3.82□□□□□ -1.8
USA1YML029W SSH4P32343 579 aa3.82□□□□□ -1.8
USA1YML029W RPS1AP33442 255 aaKnown RBP3.82□□□□□ -1.8
USA1YML029W YKL069WP36088 180 aa3.82□□□□□ -1.8
USA1YML029W HSM3P38348 480 aa3.82□□□□□ -1.8
USA1YML029W WSC4P38739 605 aa3.82□□□□□ -1.8
USA1YML029W PCL5P38794 229 aa3.82□□□□□ -1.8
USA1YML029W IRR1P40541 1150 aa3.82□□□□□ -1.8
USA1YML029W RPA14P50106 137 aa3.82□□□□□ -1.8
USA1YML029W BNI4P53858 892 aa3.82□□□□□ -1.8
USA1YML029W TLG1Q03322 224 aa3.82□□□□□ -1.8
USA1YML029W YPR097WQ06839 1073 aa3.82□□□□□ -1.8
USA1YML029W XYL2Q07993 356 aa3.82□□□□□ -1.8
USA1YML029W STE2D6VTK4 431 aa3.82□□□□□ -1.8
USA1YML029W YPR089WO13585 888 aa3.82□□□□□ -1.8
USA1YML029W YAR066WP0CX18 203 aa3.82□□□□□ -1.8
USA1YML029W YHR214WP0CX19 203 aa3.82□□□□□ -1.8
USA1YML029W RPA135P22138 1203 aaKnown RBP3.82□□□□□ -1.8
USA1YML029W SEC15P22224 910 aa3.82□□□□□ -1.8
USA1YML029W YCR099CP25657 155 aa3.82□□□□□ -1.8
USA1YML029W SPT16P32558 1035 aaKnown RBP3.82□□□□□ -1.8
USA1YML029W ISC10P32645 267 aa3.82□□□□□ -1.8
USA1YML029W PET112P33893 541 aa3.82□□□□□ -1.8
USA1YML029W LRG1P35688 1017 aa3.82□□□□□ -1.8
USA1YML029W TCD2P36101 447 aaKnown RBP3.82□□□□□ -1.8
USA1YML029W PIM1P36775 1133 aa3.82□□□□□ -1.8
USA1YML029W PFS1P38872 237 aa3.82□□□□□ -1.8
USA1YML029W ELO1P39540 310 aa3.82□□□□□ -1.8
USA1YML029W YEL073CP39974 107 aa3.82□□□□□ -1.8
USA1YML029W EMP65P40085 556 aa3.82□□□□□ -1.8
USA1YML029W AXL1P40851 1208 aa3.82□□□□□ -1.8
USA1YML029W MDM34P53083 459 aa3.82□□□□□ -1.8
USA1YML029W SWS2P53937 143 aa3.82□□□□□ -1.8
USA1YML029W TRM82Q03774 444 aa3.82□□□□□ -1.8
Retrieved 100 of 5,963 RNA–protein pairs in 12.5 ms