RNA–Protein interactions for RNA: YJR042W

NUP85, Transcript of Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), yeast

Gene NUP85, Length 2,235 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP85	YJR042W	SSY5	P47002	699 aa		3.78	□□□□□ -1.8
NUP85	YJR042W	ZAP1	P47043	880 aa		3.78	□□□□□ -1.8
NUP85	YJR042W	PET130	P47065	347 aa		3.78	□□□□□ -1.8
NUP85	YJR042W	PAN2	P53010	1115 aa	Predicted RBP	3.78	□□□□□ -1.8
NUP85	YJR042W	COS12	P53053	380 aa		3.78	□□□□□ -1.8
NUP85	YJR042W	RAI1	P53063	387 aa	Known RBP	3.78	□□□□□ -1.8
NUP85	YJR042W	YML037C	Q03703	340 aa		3.78	□□□□□ -1.8
NUP85	YJR042W	MRPL1	Q04599	285 aa		3.78	□□□□□ -1.8
NUP85	YJR042W	TRE1	Q08919	783 aa		3.78	□□□□□ -1.8
NUP85	YJR042W	ELG1	Q12050	791 aa		3.78	□□□□□ -1.8
NUP85	YJR042W	PNO1	Q99216	274 aa	Known RBP	3.78	□□□□□ -1.8
NUP85	YJR042W	CBP2	P03874	630 aa	Predicted RBP	3.77	□□□□□ -1.81
NUP85	YJR042W	YML003W	P0CF16	290 aa		3.77	□□□□□ -1.81
NUP85	YJR042W	RPB4	P20433	221 aa	Predicted RBP	3.77	□□□□□ -1.81
NUP85	YJR042W	RPC82	P32349	654 aa		3.77	□□□□□ -1.81
NUP85	YJR042W	TIF3	P34167	436 aa	Known RBP	3.77	□□□□□ -1.81
NUP85	YJR042W	MNL1	P38888	796 aa		3.77	□□□□□ -1.81
NUP85	YJR042W	VFA1	P40080	203 aa		3.77	□□□□□ -1.81
NUP85	YJR042W	SEC24	P40482	926 aa	Known RBP	3.77	□□□□□ -1.81
NUP85	YJR042W	YIL089W	P40500	205 aa		3.77	□□□□□ -1.81
NUP85	YJR042W	TED1	P40533	473 aa		3.77	□□□□□ -1.81
NUP85	YJR042W	MMM1	P41800	426 aa		3.77	□□□□□ -1.81
NUP85	YJR042W	GCN20	P43535	752 aa	Known RBP	3.77	□□□□□ -1.81
NUP85	YJR042W	AQR1	P53943	586 aa		3.77	□□□□□ -1.81
NUP85	YJR042W	ATG21	Q02887	496 aa		3.77	□□□□□ -1.81
NUP85	YJR042W	CDA1	Q06702	301 aa		3.77	□□□□□ -1.81
NUP85	YJR042W	NCB2	Q92317	146 aa		3.77	□□□□□ -1.81
NUP85	YJR042W	ARD1	P07347	238 aa	Predicted RBP	3.76	□□□□□ -1.81
NUP85	YJR042W	PYC1	P11154	1178 aa	Known RBP	3.76	□□□□□ -1.81
NUP85	YJR042W	UBA1	P22515	1024 aa	Known RBP	3.76	□□□□□ -1.81
NUP85	YJR042W	GEX1	P25596	615 aa		3.76	□□□□□ -1.81
NUP85	YJR042W	URK1	P27515	501 aa		3.76	□□□□□ -1.81
NUP85	YJR042W	ELM1	P32801	640 aa		3.76	□□□□□ -1.81
NUP85	YJR042W	CMC1	P36064	111 aa		3.76	□□□□□ -1.81
NUP85	YJR042W	ERC1	P38767	581 aa		3.76	□□□□□ -1.81
NUP85	YJR042W	REV7	P38927	245 aa		3.76	□□□□□ -1.81
NUP85	YJR042W	CEM1	P39525	442 aa		3.76	□□□□□ -1.81
NUP85	YJR042W	YIL108W	P40483	696 aa	Known RBP	3.76	□□□□□ -1.81
NUP85	YJR042W	AIR1	P40507	360 aa	Known RBP	3.76	□□□□□ -1.81
NUP85	YJR042W	YGL185C	P53100	379 aa		3.76	□□□□□ -1.81
NUP85	YJR042W	PNC1	P53184	216 aa	Known RBP	3.76	□□□□□ -1.81
NUP85	YJR042W	DCP2	P53550	970 aa	Known RBP	3.76	□□□□□ -1.81
NUP85	YJR042W	KTR5	P53966	522 aa	Predicted RBP	3.76	□□□□□ -1.81
NUP85	YJR042W	SEG1	Q04279	960 aa		3.76	□□□□□ -1.81
NUP85	YJR042W	YLR413W	Q06689	675 aa		3.76	□□□□□ -1.81
NUP85	YJR042W	DCI1	Q08558	271 aa		3.76	□□□□□ -1.81
NUP85	YJR042W	RBD2	Q12270	262 aa		3.76	□□□□□ -1.81
NUP85	YJR042W	GIS3	Q12418	502 aa		3.76	□□□□□ -1.81
NUP85	YJR042W	PFK27	Q12471	397 aa	Predicted RBP	3.76	□□□□□ -1.81
NUP85	YJR042W	SEC39	Q12745	709 aa		3.76	□□□□□ -1.81
NUP85	YJR042W	SWI1	P09547	1314 aa		3.76	□□□□□ -1.81
NUP85	YJR042W	GPM1	P00950	247 aa	Known RBP	3.76	□□□□□ -1.81
NUP85	YJR042W	GAL80	P04387	435 aa		3.76	□□□□□ -1.81
NUP85	YJR042W	STE3	P06783	470 aa		3.76	□□□□□ -1.81
NUP85	YJR042W	CDC42	P19073	191 aa		3.76	□□□□□ -1.81
NUP85	YJR042W	NAR1	P23503	491 aa	Known RBP	3.76	□□□□□ -1.81
NUP85	YJR042W	IDH2	P28241	369 aa	Known RBP	3.76	□□□□□ -1.81
NUP85	YJR042W	EFB1	P32471	206 aa	Known RBP	3.76	□□□□□ -1.81
NUP85	YJR042W	YBL055C	P34220	418 aa	Predicted RBP	3.76	□□□□□ -1.81
NUP85	YJR042W	PFF1	P38244	976 aa		3.76	□□□□□ -1.81
NUP85	YJR042W	STN1	P38960	494 aa		3.76	□□□□□ -1.81
NUP85	YJR042W	MNN9	P39107	395 aa	Known RBP	3.76	□□□□□ -1.81
NUP85	YJR042W	NUP60	P39705	539 aa		3.76	□□□□□ -1.81
NUP85	YJR042W	IME4	P41833	600 aa		3.76	□□□□□ -1.81
NUP85	YJR042W	PFA3	P42836	336 aa		3.76	□□□□□ -1.81
NUP85	YJR042W	VID30	P53076	958 aa		3.76	□□□□□ -1.81
NUP85	YJR042W	TNA1	P53322	534 aa		3.76	□□□□□ -1.81
NUP85	YJR042W	ARG5,6	Q01217	863 aa		3.76	□□□□□ -1.81
NUP85	YJR042W	EGD1	Q02642	157 aa	Known RBP	3.76	□□□□□ -1.81
NUP85	YJR042W	VPS64	Q03944	604 aa		3.76	□□□□□ -1.81
NUP85	YJR042W	URC2	Q04411	772 aa		3.76	□□□□□ -1.81
NUP85	YJR042W	ARR1	Q06596	294 aa		3.76	□□□□□ -1.81
NUP85	YJR042W	ETT1	Q08421	412 aa	Known RBP	3.76	□□□□□ -1.81
NUP85	YJR042W	RLM1	Q12224	676 aa		3.76	□□□□□ -1.81
NUP85	YJR042W	UTP10	P42945	1769 aa	Known RBP	3.76	□□□□□ -1.81
NUP85	YJR042W	RIM15	P43565	1770 aa		3.76	□□□□□ -1.81
NUP85	YJR042W	RSF2	P46974	1380 aa		3.76	□□□□□ -1.81
NUP85	YJR042W	PDR18	P53756	1333 aa		3.76	□□□□□ -1.81
NUP85	YJR042W	KGD1	P20967	1014 aa	Known RBP	3.75	□□□□□ -1.81
NUP85	YJR042W	YME2	P32843	850 aa		3.75	□□□□□ -1.81
NUP85	YJR042W	PGM1	P33401	570 aa	Known RBP	3.75	□□□□□ -1.81
NUP85	YJR042W	TCD2	P36101	447 aa	Known RBP	3.75	□□□□□ -1.81
NUP85	YJR042W	RPC37	P36121	282 aa		3.75	□□□□□ -1.81
NUP85	YJR042W	AAP1	P37898	856 aa	Known RBP	3.75	□□□□□ -1.81
NUP85	YJR042W	TIF5	P38431	405 aa	Known RBP	3.75	□□□□□ -1.81
NUP85	YJR042W	YHR112C	P38716	378 aa		3.75	□□□□□ -1.81
NUP85	YJR042W	CTF8	P38877	133 aa		3.75	□□□□□ -1.81
NUP85	YJR042W	YGL138C	P53122	345 aa		3.75	□□□□□ -1.81
NUP85	YJR042W	MUS81	Q04149	632 aa	Predicted RBP	3.75	□□□□□ -1.81
NUP85	YJR042W	ADE13	Q05911	482 aa	Known RBP	3.75	□□□□□ -1.81
NUP85	YJR042W	VPS38	Q05919	439 aa		3.75	□□□□□ -1.81
NUP85	YJR042W	ARR3	Q06598	404 aa		3.75	□□□□□ -1.81
NUP85	YJR042W	HBT1	Q07653	1046 aa	Known RBP	3.75	□□□□□ -1.81
NUP85	YJR042W	PUS7	Q08647	676 aa	Known RBP	3.75	□□□□□ -1.81
NUP85	YJR042W	HIP1	P06775	603 aa		3.75	□□□□□ -1.81
NUP85	YJR042W	SEC62	P21825	274 aa		3.75	□□□□□ -1.81
NUP85	YJR042W	YSP3	P25036	478 aa		3.75	□□□□□ -1.81
NUP85	YJR042W	YKL070W	P36087	169 aa		3.75	□□□□□ -1.81
NUP85	YJR042W	NUP133	P36161	1157 aa		3.75	□□□□□ -1.81
NUP85	YJR042W	TOS1	P38288	455 aa		3.75	□□□□□ -1.81

Retrieved 100 of 5,963 RNA–protein pairs in 15 ms