RNA–Protein interactions for RNA: YJL154C

VPS35, Transcript of Endosomal subunit of membrane-associated retromer complex, yeastyeast

Gene VPS35, Length 2,835 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS35YJL154C TEN1Q07921 160 aa2.23□□□□□ -2.05
VPS35YJL154C CDC45Q08032 650 aa2.23□□□□□ -2.05
VPS35YJL154C FRE7Q12333 620 aa2.23□□□□□ -2.05
VPS35YJL154C HSH49Q99181 213 aaPredicted RBP2.23□□□□□ -2.05
VPS35YJL154C FOB1O13329 566 aa2.22□□□□□ -2.05
VPS35YJL154C RED1P14291 827 aa2.22□□□□□ -2.05
VPS35YJL154C MET8P15807 274 aa2.22□□□□□ -2.05
VPS35YJL154C CNA1P23287 553 aa2.22□□□□□ -2.05
VPS35YJL154C SNU114P36048 1008 aaKnown RBP2.22□□□□□ -2.05
VPS35YJL154C MUM2P38236 366 aa2.22□□□□□ -2.05
VPS35YJL154C YMR124WP39523 943 aaKnown RBP2.22□□□□□ -2.05
VPS35YJL154C NET1P47035 1189 aa2.22□□□□□ -2.05
VPS35YJL154C SGF73P53165 657 aa2.22□□□□□ -2.05
VPS35YJL154C IPI3P53877 555 aa2.22□□□□□ -2.05
VPS35YJL154C YDR239CQ03780 787 aa2.22□□□□□ -2.05
VPS35YJL154C ARP10Q04549 284 aa2.22□□□□□ -2.05
VPS35YJL154C POS5Q06892 414 aa2.22□□□□□ -2.05
VPS35YJL154C SDH5Q08230 162 aa2.22□□□□□ -2.05
VPS35YJL154C RDR1Q08904 546 aa2.22□□□□□ -2.05
VPS35YJL154C RIM20Q12033 661 aa2.22□□□□□ -2.05
VPS35YJL154C NUP159P40477 1460 aa2.22□□□□□ -2.05
VPS35YJL154C TY1B-HO13535 1793 aa2.22□□□□□ -2.05
VPS35YJL154C TY1B-DR5P0C2I2 1755 aa2.22□□□□□ -2.05
VPS35YJL154C TY1B-DR6P0C2I3 1755 aa2.22□□□□□ -2.05
VPS35YJL154C TY1B-LR2P0C2I5 1755 aa2.22□□□□□ -2.05
VPS35YJL154C TY1B-LR3P0C2I6 1755 aaKnown RBP2.22□□□□□ -2.05
VPS35YJL154C TY1B-PR1P0C2I9 1755 aaKnown RBP2.22□□□□□ -2.05
VPS35YJL154C TY1B-PR2P0C2J0 1756 aa2.22□□□□□ -2.05
VPS35YJL154C TY1B-PR3P0C2J1 1755 aaKnown RBP2.22□□□□□ -2.05
VPS35YJL154C TY1B-JR1P47098 1755 aa2.22□□□□□ -2.05
VPS35YJL154C TY1B-ML2Q03434 1755 aaKnown RBP2.22□□□□□ -2.05
VPS35YJL154C TY1B-ER1Q03612 1755 aa2.22□□□□□ -2.05
VPS35YJL154C TY1B-ML1Q04711 1755 aaKnown RBP2.22□□□□□ -2.05
VPS35YJL154C TY1B-GR2Q12269 1755 aa2.22□□□□□ -2.05
VPS35YJL154C TY1B-OLQ12273 1755 aa2.22□□□□□ -2.05
VPS35YJL154C TY1B-PLQ12414 1755 aaKnown RBP2.22□□□□□ -2.05
VPS35YJL154C ARG3P05150 338 aa2.22□□□□□ -2.05
VPS35YJL154C CST26P38226 397 aa2.22□□□□□ -2.05
VPS35YJL154C TOM71P38825 639 aaKnown RBP2.22□□□□□ -2.05
VPS35YJL154C ELO1P39540 310 aa2.22□□□□□ -2.05
VPS35YJL154C CDC1P40986 491 aa2.22□□□□□ -2.05
VPS35YJL154C LYS4P49367 693 aaPredicted RBP2.22□□□□□ -2.05
VPS35YJL154C YTP1P53584 459 aa2.22□□□□□ -2.05
VPS35YJL154C VTC3Q02725 835 aa2.22□□□□□ -2.05
VPS35YJL154C VPS38Q05919 439 aa2.22□□□□□ -2.05
VPS35YJL154C PIG1Q06216 648 aa2.22□□□□□ -2.05
VPS35YJL154C BUD7Q08754 746 aa2.22□□□□□ -2.05
VPS35YJL154C FRE3Q08905 711 aa2.22□□□□□ -2.05
VPS35YJL154C TOP2P06786 1428 aaKnown RBP2.21□□□□□ -2.06
VPS35YJL154C DFR1P07807 211 aaKnown RBP RIP-Chip data2.21□□□□□ -2.06not detected
VPS35YJL154C CHO1P08456 276 aa2.21□□□□□ -2.06
VPS35YJL154C SSE2P32590 693 aaKnown RBP2.21□□□□□ -2.06
VPS35YJL154C YME1P32795 747 aa2.21□□□□□ -2.06
VPS35YJL154C YBR144CP34215 104 aa2.21□□□□□ -2.06
VPS35YJL154C MNN2P38069 597 aa2.21□□□□□ -2.06
VPS35YJL154C ROT2P38138 954 aa2.21□□□□□ -2.06
VPS35YJL154C SRO77P38163 1010 aa2.21□□□□□ -2.06
VPS35YJL154C RGI2P40188 164 aa2.21□□□□□ -2.06
VPS35YJL154C CFD1P40558 293 aa2.21□□□□□ -2.06
VPS35YJL154C SGM1P47166 707 aa2.21□□□□□ -2.06
VPS35YJL154C ERG26P53199 349 aaKnown RBP2.21□□□□□ -2.06
VPS35YJL154C SYF1Q04048 859 aaPredicted RBP2.21□□□□□ -2.06
VPS35YJL154C YKU80Q04437 629 aa2.21□□□□□ -2.06
VPS35YJL154C MRPL1Q04599 285 aa2.21□□□□□ -2.06
VPS35YJL154C IMH1Q06704 911 aaKnown RBP2.21□□□□□ -2.06
VPS35YJL154C ATG9Q12142 997 aa2.21□□□□□ -2.06
VPS35YJL154C AVL9Q12500 764 aa2.21□□□□□ -2.06
VPS35YJL154C YPT6Q99260 215 aa2.21□□□□□ -2.06
VPS35YJL154C GAL80P04387 435 aa2.21□□□□□ -2.06
VPS35YJL154C PDA1P16387 420 aaKnown RBP2.21□□□□□ -2.06
VPS35YJL154C KAR3P17119 729 aa2.21□□□□□ -2.06
VPS35YJL154C PAP1P29468 568 aaKnown RBP2.21□□□□□ -2.06
VPS35YJL154C ANS1P38832 159 aa2.21□□□□□ -2.06
VPS35YJL154C EFM6P53970 246 aa2.21□□□□□ -2.06
VPS35YJL154C RSM23Q01163 450 aa2.21□□□□□ -2.06
VPS35YJL154C CTL1Q03220 320 aaKnown RBP2.21□□□□□ -2.06
VPS35YJL154C YDL218WQ07629 317 aa2.21□□□□□ -2.06
VPS35YJL154C CIR2Q08822 631 aa2.21□□□□□ -2.06
VPS35YJL154C SFI1Q12369 946 aa2.21□□□□□ -2.06
VPS35YJL154C BUD3P25558 1636 aa2.21□□□□□ -2.06
VPS35YJL154C CKA1P15790 372 aa2.2□□□□□ -2.06
VPS35YJL154C STE50P25344 346 aa2.2□□□□□ -2.06
VPS35YJL154C YKL100CP34248 587 aa2.2□□□□□ -2.06
VPS35YJL154C RPL32P38061 130 aaKnown RBP2.2□□□□□ -2.06
VPS35YJL154C RRP3P38712 501 aaKnown RBP2.2□□□□□ -2.06
VPS35YJL154C NPR2P39923 615 aa2.2□□□□□ -2.06
VPS35YJL154C SPO22P40511 975 aa2.2□□□□□ -2.06
VPS35YJL154C VTC2P43585 828 aa2.2□□□□□ -2.06
VPS35YJL154C ECI1Q05871 280 aa2.2□□□□□ -2.06
VPS35YJL154C ETT1Q08421 412 aaKnown RBP2.2□□□□□ -2.06
VPS35YJL154C RRG1Q12167 365 aaPredicted RBP2.2□□□□□ -2.06
VPS35YJL154C RPO21P04050 1733 aaKnown RBP2.2□□□□□ -2.06
VPS35YJL154C TY2B-LR1P0C2J3 1770 aa2.2□□□□□ -2.06
VPS35YJL154C TY2B-FP0CX63 1770 aa2.2□□□□□ -2.06
VPS35YJL154C TY2B-GR2P0CX64 1770 aa2.2□□□□□ -2.06
VPS35YJL154C TY2B-CP25384 1770 aa2.2□□□□□ -2.06
VPS35YJL154C TY2B-DR2Q03494 1770 aa2.2□□□□□ -2.06
VPS35YJL154C TY1B-DR1Q03855 1755 aa2.2□□□□□ -2.06
VPS35YJL154C TY2B-DR3Q07791 1770 aaKnown RBP2.2□□□□□ -2.06
VPS35YJL154C TY2B-OR1Q12113 1770 aa2.2□□□□□ -2.06
Retrieved 100 of 5,963 RNA–protein pairs in 16.7 ms