RNA–Protein interactions for RNA: YFR004W

RPN11, Transcript of Metalloprotease subunit of 19S regulatory particle, yeast

Gene RPN11, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPN11	YFR004W	MPH2	P0CD99	609 aa		6	□□□□□ -1.45
RPN11	YFR004W	YAK1	P14680	807 aa		6	□□□□□ -1.45
RPN11	YFR004W	PDC5	P16467	563 aa	Known RBP	6	□□□□□ -1.45
RPN11	YFR004W	HSP60	P19882	572 aa	Known RBP	6	□□□□□ -1.45
RPN11	YFR004W	SAN1	P22470	610 aa		6	□□□□□ -1.45
RPN11	YFR004W	NDI1	P32340	513 aa		6	□□□□□ -1.45
RPN11	YFR004W	LYP1	P32487	611 aa		6	□□□□□ -1.45
RPN11	YFR004W	SPR1	P32603	445 aa		6	□□□□□ -1.45
RPN11	YFR004W	MRP8	P35719	219 aa		6	□□□□□ -1.45
RPN11	YFR004W	SRP68	P38687	599 aa	Known RBP	6	□□□□□ -1.45
RPN11	YFR004W	PFS1	P38872	237 aa		6	□□□□□ -1.45
RPN11	YFR004W	YTA6	P40328	754 aa		6	□□□□□ -1.45
RPN11	YFR004W	IRR1	P40541	1150 aa		6	□□□□□ -1.45
RPN11	YFR004W	DUG1	P43616	481 aa	Known RBP	6	□□□□□ -1.45
RPN11	YFR004W	CCT8	P47079	568 aa	Known RBP	6	□□□□□ -1.45
RPN11	YFR004W	MIG2	P53035	382 aa		6	□□□□□ -1.45
RPN11	YFR004W	TEL2	P53038	688 aa		6	□□□□□ -1.45
RPN11	YFR004W	ARI1	P53111	347 aa	Known RBP	6	□□□□□ -1.45
RPN11	YFR004W	COG2	P53271	262 aa		6	□□□□□ -1.45
RPN11	YFR004W	BUD32	P53323	261 aa		6	□□□□□ -1.45
RPN11	YFR004W	RCF2	P53721	224 aa		6	□□□□□ -1.45
RPN11	YFR004W	IST1	P53843	298 aa	Predicted RBP	6	□□□□□ -1.45
RPN11	YFR004W	YMR206W	Q03695	313 aa		6	□□□□□ -1.45
RPN11	YFR004W	YKU80	Q04437	629 aa		6	□□□□□ -1.45
RPN11	YFR004W	CDC123	Q05791	360 aa		6	□□□□□ -1.45
RPN11	YFR004W	FAR10	Q06001	478 aa		6	□□□□□ -1.45
RPN11	YFR004W	ENT4	Q07872	247 aa		6	□□□□□ -1.45
RPN11	YFR004W	SLD7	Q08457	257 aa		6	□□□□□ -1.45
RPN11	YFR004W	HOS1	Q12214	470 aa		6	□□□□□ -1.45
RPN11	YFR004W	CMR1	Q12510	522 aa	Known RBP	6	□□□□□ -1.45
RPN11	YFR004W	POL2	P21951	2222 aa	Known RBP	6	□□□□□ -1.45
RPN11	YFR004W	GCY1	P14065	312 aa	Known RBP RIP-Chip data	5.99	□□□□□ -1.45	not detected
RPN11	YFR004W	HSP26	P15992	214 aa	Known RBP RIP-Chip data	5.99	□□□□□ -1.45	not detected
RPN11	YFR004W	HRR25	P29295	494 aa	Known RBP	5.99	□□□□□ -1.45
RPN11	YFR004W	MRS6	P32864	603 aa	Known RBP	5.99	□□□□□ -1.45
RPN11	YFR004W	AST1	P35183	429 aa		5.99	□□□□□ -1.45
RPN11	YFR004W	ASK1	P35734	292 aa		5.99	□□□□□ -1.45
RPN11	YFR004W	YKR078W	P36158	585 aa	Known RBP	5.99	□□□□□ -1.45
RPN11	YFR004W	MRPL40	P36534	297 aa		5.99	□□□□□ -1.45
RPN11	YFR004W	YBR053C	P38235	358 aa		5.99	□□□□□ -1.45
RPN11	YFR004W	YHI9	P38765	294 aa		5.99	□□□□□ -1.45
RPN11	YFR004W	UME6	P39001	836 aa		5.99	□□□□□ -1.45
RPN11	YFR004W	YPS6	P40583	537 aa		5.99	□□□□□ -1.45
RPN11	YFR004W	RLP7	P40693	322 aa	Known RBP	5.99	□□□□□ -1.45
RPN11	YFR004W	ARC1	P46672	376 aa	Known RBP	5.99	□□□□□ -1.45
RPN11	YFR004W	RPS10B	P46784	105 aa	Known RBP	5.99	□□□□□ -1.45
RPN11	YFR004W	FMP33	P46998	180 aa		5.99	□□□□□ -1.45
RPN11	YFR004W	COQ5	P49017	307 aa		5.99	□□□□□ -1.45
RPN11	YFR004W	ASN2	P49090	572 aa	Known RBP	5.99	□□□□□ -1.45
RPN11	YFR004W	TAN1	P53072	289 aa	Predicted RBP	5.99	□□□□□ -1.45
RPN11	YFR004W	NPY1	P53164	384 aa		5.99	□□□□□ -1.45
RPN11	YFR004W	TIM13	P53299	105 aa		5.99	□□□□□ -1.45
RPN11	YFR004W	NRD1	P53617	575 aa	Known RBP RIP-Chip data	5.99	□□□□□ -1.45	not detected
RPN11	YFR004W	SIW14	P53965	281 aa		5.99	□□□□□ -1.45
RPN11	YFR004W	NAM8	Q00539	523 aa	Known RBP	5.99	□□□□□ -1.45
RPN11	YFR004W	CSN9	Q03981	162 aa		5.99	□□□□□ -1.45
RPN11	YFR004W	SPG3	Q04398	127 aa	Predicted RBP	5.99	□□□□□ -1.45
RPN11	YFR004W	MEU1	Q07938	337 aa	Known RBP RIP-Chip data	5.99	□□□□□ -1.45	not detected
RPN11	YFR004W	RPS10A	Q08745	105 aa	Predicted RBP	5.99	□□□□□ -1.45
RPN11	YFR004W	SNX3	Q08826	162 aa	Known RBP	5.99	□□□□□ -1.45
RPN11	YFR004W	STE2	D6VTK4	431 aa		5.98	□□□□□ -1.45
RPN11	YFR004W	RHO2	P06781	192 aa		5.98	□□□□□ -1.45
RPN11	YFR004W	SBP1	P10080	294 aa	Known RBP	5.98	□□□□□ -1.45
RPN11	YFR004W	ADY2	P25613	283 aa		5.98	□□□□□ -1.45
RPN11	YFR004W	DPH5	P32469	300 aa	Predicted RBP	5.98	□□□□□ -1.45
RPN11	YFR004W	TFC3	P34111	1160 aa		5.98	□□□□□ -1.45
RPN11	YFR004W	BET3	P36149	193 aa		5.98	□□□□□ -1.45
RPN11	YFR004W	CTP1	P38152	299 aa		5.98	□□□□□ -1.45
RPN11	YFR004W	FSH1	P38777	243 aa	Known RBP	5.98	□□□□□ -1.45
RPN11	YFR004W	BZZ1	P38822	633 aa		5.98	□□□□□ -1.45
RPN11	YFR004W	PRM9	P39551	298 aa		5.98	□□□□□ -1.45
RPN11	YFR004W	MEF2	P39677	819 aa		5.98	□□□□□ -1.45
RPN11	YFR004W	EXO1	P39875	702 aa		5.98	□□□□□ -1.45
RPN11	YFR004W	YEL028W	P39989	153 aa		5.98	□□□□□ -1.45
RPN11	YFR004W	HPM1	P40481	377 aa		5.98	□□□□□ -1.45
RPN11	YFR004W	PRM2	P40534	656 aa		5.98	□□□□□ -1.45
RPN11	YFR004W	VMA13	P41807	478 aa	Known RBP	5.98	□□□□□ -1.45
RPN11	YFR004W	SET2	P46995	733 aa	Known RBP	5.98	□□□□□ -1.45
RPN11	YFR004W	TRF5	P48561	642 aa	Known RBP	5.98	□□□□□ -1.45
RPN11	YFR004W	AIF1	P52923	378 aa		5.98	□□□□□ -1.45
RPN11	YFR004W	MAL11	P53048	616 aa		5.98	□□□□□ -1.45
RPN11	YFR004W	YMR155W	Q03795	547 aa		5.98	□□□□□ -1.45
RPN11	YFR004W	NHX1	Q04121	633 aa		5.98	□□□□□ -1.45
RPN11	YFR004W	ARA2	Q04212	335 aa		5.98	□□□□□ -1.45
RPN11	YFR004W	RSC2	Q06488	889 aa		5.98	□□□□□ -1.45
RPN11	YFR004W	ASA1	Q06822	443 aa		5.98	□□□□□ -1.45
RPN11	YFR004W	PEX15	Q08215	383 aa		5.98	□□□□□ -1.45
RPN11	YFR004W	NDD1	Q08887	554 aa		5.98	□□□□□ -1.45
RPN11	YFR004W	SVS1	Q12254	260 aa		5.98	□□□□□ -1.45
RPN11	YFR004W	ARP7	Q12406	477 aa		5.98	□□□□□ -1.45
RPN11	YFR004W	RRP36	Q12481	300 aa	Predicted RBP	5.98	□□□□□ -1.45
RPN11	YFR004W	ADF1	Q2V2Q1	113 aa		5.98	□□□□□ -1.45
RPN11	YFR004W	INO1	P11986	533 aa		5.97	□□□□□ -1.45
RPN11	YFR004W	HSC82	P15108	705 aa	Known RBP	5.97	□□□□□ -1.45
RPN11	YFR004W	ARF2	P19146	181 aa	Known RBP	5.97	□□□□□ -1.45
RPN11	YFR004W	SEC15	P22224	910 aa		5.97	□□□□□ -1.45
RPN11	YFR004W	AMD2	P22580	549 aa		5.97	□□□□□ -1.45
RPN11	YFR004W	YIH1	P25637	258 aa		5.97	□□□□□ -1.45
RPN11	YFR004W	ZIP1	P31111	875 aa		5.97	□□□□□ -1.45
RPN11	YFR004W	HEM12	P32347	362 aa	Predicted RBP	5.97	□□□□□ -1.45

Retrieved 100 of 5,963 RNA–protein pairs in 21.4 ms