RNA–Protein interactions for RNA: YFL001W

DEG1, Transcript of tRNA:pseudouridine synthase, yeast

Gene DEG1, Length 1,329 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEG1	YFL001W	TY2B-OR2	Q12501	1770 aa		4.91	□□□□□ -1.62
DEG1	YFL001W	MDH1	P17505	334 aa	Known RBP RIP-Chip data	4.91	□□□□□ -1.62	not detected
DEG1	YFL001W	CLC1	P17891	233 aa		4.91	□□□□□ -1.62
DEG1	YFL001W	ART10	P18634	518 aa	Known RBP	4.91	□□□□□ -1.62
DEG1	YFL001W	CDC43	P18898	376 aa		4.91	□□□□□ -1.62
DEG1	YFL001W	APN1	P22936	367 aa		4.91	□□□□□ -1.62
DEG1	YFL001W	MNE1	P24720	663 aa		4.91	□□□□□ -1.62
DEG1	YFL001W	ANP1	P32629	500 aa		4.91	□□□□□ -1.62
DEG1	YFL001W	RPS0A	P32905	252 aa	Known RBP	4.91	□□□□□ -1.62
DEG1	YFL001W	SEC3	P33332	1336 aa	Known RBP	4.91	□□□□□ -1.62
DEG1	YFL001W	NUP133	P36161	1157 aa		4.91	□□□□□ -1.62
DEG1	YFL001W	APE3	P37302	537 aa	Known RBP	4.91	□□□□□ -1.62
DEG1	YFL001W	SPP41	P38904	1435 aa		4.91	□□□□□ -1.62
DEG1	YFL001W	ZIM17	P42844	174 aa		4.91	□□□□□ -1.62
DEG1	YFL001W	BUD27	P43573	796 aa	Known RBP RIP-Chip data	4.91	□□□□□ -1.62	not detected
DEG1	YFL001W	YPR003C	P53394	754 aa		4.91	□□□□□ -1.62
DEG1	YFL001W	YNL058C	P53947	316 aa		4.91	□□□□□ -1.62
DEG1	YFL001W	ROY1	Q04847	553 aa		4.91	□□□□□ -1.62
DEG1	YFL001W	VTA1	Q06263	330 aa		4.91	□□□□□ -1.62
DEG1	YFL001W	IRC3	Q06683	689 aa		4.91	□□□□□ -1.62
DEG1	YFL001W	YOL159C	Q08300	171 aa		4.91	□□□□□ -1.62
DEG1	YFL001W	PDH1	Q12428	516 aa	Known RBP	4.91	□□□□□ -1.62
DEG1	YFL001W	MYO4	P32492	1471 aa		4.9	□□□□□ -1.63
DEG1	YFL001W	HEM1	P09950	548 aa	Predicted RBP	4.9	□□□□□ -1.63
DEG1	YFL001W	KRS1	P15180	591 aa	Known RBP	4.9	□□□□□ -1.63
DEG1	YFL001W	SPE2	P21182	396 aa		4.9	□□□□□ -1.63
DEG1	YFL001W	CPR2	P23285	205 aa		4.9	□□□□□ -1.63
DEG1	YFL001W	SAT4	P25333	603 aa	Known RBP	4.9	□□□□□ -1.63
DEG1	YFL001W	SNT1	P25357	1226 aa		4.9	□□□□□ -1.63
DEG1	YFL001W	AAD3	P25612	363 aa		4.9	□□□□□ -1.63
DEG1	YFL001W	IMG1	P25626	169 aa		4.9	□□□□□ -1.63
DEG1	YFL001W	DPH2	P32461	534 aa		4.9	□□□□□ -1.63
DEG1	YFL001W	UGP1	P32861	499 aa	Known RBP	4.9	□□□□□ -1.63
DEG1	YFL001W	GDI1	P39958	451 aa	Known RBP	4.9	□□□□□ -1.63
DEG1	YFL001W	LCB2	P40970	561 aa		4.9	□□□□□ -1.63
DEG1	YFL001W	CDC1	P40986	491 aa		4.9	□□□□□ -1.63
DEG1	YFL001W	VMA13	P41807	478 aa	Known RBP	4.9	□□□□□ -1.63
DEG1	YFL001W	TCB2	P48231	1178 aa		4.9	□□□□□ -1.63
DEG1	YFL001W	OAZ1	Q02803	292 aa		4.9	□□□□□ -1.63
DEG1	YFL001W	SOV1	Q04748	898 aa		4.9	□□□□□ -1.63
DEG1	YFL001W	RBS1	Q05672	457 aa	Known RBP	4.9	□□□□□ -1.63
DEG1	YFL001W	ARO10	Q06408	635 aa		4.9	□□□□□ -1.63
DEG1	YFL001W	THI3	Q07471	609 aa		4.9	□□□□□ -1.63
DEG1	YFL001W	AFI1	Q99222	893 aa		4.9	□□□□□ -1.63
DEG1	YFL001W	TRM732	Q03496	1420 aa		4.89	□□□□□ -1.63
DEG1	YFL001W	CHO1	P08456	276 aa		4.89	□□□□□ -1.63
DEG1	YFL001W	MRP2	P10663	115 aa	Predicted RBP	4.89	□□□□□ -1.63
DEG1	YFL001W	PUP2	P32379	260 aa		4.89	□□□□□ -1.63
DEG1	YFL001W	EMP70	P32802	667 aa		4.89	□□□□□ -1.63
DEG1	YFL001W	RPC34	P32910	317 aa		4.89	□□□□□ -1.63
DEG1	YFL001W	YBL055C	P34220	418 aa	Predicted RBP	4.89	□□□□□ -1.63
DEG1	YFL001W	TSC10	P38342	320 aa		4.89	□□□□□ -1.63
DEG1	YFL001W	SEC28	P40509	296 aa	Known RBP	4.89	□□□□□ -1.63
DEG1	YFL001W	SAE2	P46946	345 aa		4.89	□□□□□ -1.63
DEG1	YFL001W	FMP45	Q07651	309 aa		4.89	□□□□□ -1.63
DEG1	YFL001W	APL4	Q12028	832 aa		4.89	□□□□□ -1.63
DEG1	YFL001W	ULA1	Q12059	462 aa		4.89	□□□□□ -1.63
DEG1	YFL001W	MRH1	Q12117	320 aa	Predicted RBP	4.89	□□□□□ -1.63
DEG1	YFL001W	MAK32	P23060	363 aa		4.88	□□□□□ -1.63
DEG1	YFL001W	BOS1	P25385	244 aa		4.88	□□□□□ -1.63
DEG1	YFL001W	KRR1	P25586	316 aa	Predicted RBP	4.88	□□□□□ -1.63
DEG1	YFL001W	GSY2	P27472	705 aa		4.88	□□□□□ -1.63
DEG1	YFL001W	ERV1	P27882	189 aa		4.88	□□□□□ -1.63
DEG1	YFL001W	HXT3	P32466	567 aa	Known RBP	4.88	□□□□□ -1.63
DEG1	YFL001W	YKL100C	P34248	587 aa		4.88	□□□□□ -1.63
DEG1	YFL001W	PTR3	P43606	678 aa		4.88	□□□□□ -1.63
DEG1	YFL001W	STB2	P46679	850 aa		4.88	□□□□□ -1.63
DEG1	YFL001W	YJL055W	P47044	245 aa		4.88	□□□□□ -1.63
DEG1	YFL001W	MEH1	Q02205	184 aa		4.88	□□□□□ -1.63
DEG1	YFL001W	KAP120	Q02932	1032 aa		4.88	□□□□□ -1.63
DEG1	YFL001W	YMR178W	Q03219	274 aa	Known RBP	4.88	□□□□□ -1.63
DEG1	YFL001W	YLR455W	Q06188	304 aa		4.88	□□□□□ -1.63
DEG1	YFL001W	TEN1	Q07921	160 aa		4.88	□□□□□ -1.63
DEG1	YFL001W	YDL007C-A	Q2V2Q0	85 aa		4.88	□□□□□ -1.63
DEG1	YFL001W	TSC11	P40061	1430 aa		4.87	□□□□□ -1.63
DEG1	YFL001W	MET5	P47169	1442 aa		4.87	□□□□□ -1.63
DEG1	YFL001W	STH1	P32597	1359 aa		4.87	□□□□□ -1.63
DEG1	YFL001W	AQY1	P0CD91	305 aa		4.87	□□□□□ -1.63
DEG1	YFL001W	BUD5	P25300	642 aa	Predicted RBP	4.87	□□□□□ -1.63
DEG1	YFL001W	YMC1	P32331	307 aa		4.87	□□□□□ -1.63
DEG1	YFL001W	OAR1	P35731	278 aa		4.87	□□□□□ -1.63
DEG1	YFL001W	MOH1	P38191	138 aa		4.87	□□□□□ -1.63
DEG1	YFL001W	ICS2	P38284	255 aa		4.87	□□□□□ -1.63
DEG1	YFL001W	MSR1	P38714	643 aa		4.87	□□□□□ -1.63
DEG1	YFL001W	CAK1	P43568	368 aa	Predicted RBP	4.87	□□□□□ -1.63
DEG1	YFL001W	MRK1	P50873	501 aa		4.87	□□□□□ -1.63
DEG1	YFL001W	ERG26	P53199	349 aa	Known RBP	4.87	□□□□□ -1.63
DEG1	YFL001W	GND2	P53319	492 aa		4.87	□□□□□ -1.63
DEG1	YFL001W	PEX25	Q02969	394 aa		4.87	□□□□□ -1.63
DEG1	YFL001W	MSC1	Q03104	513 aa		4.87	□□□□□ -1.63
DEG1	YFL001W	GYL1	Q04322	720 aa		4.87	□□□□□ -1.63
DEG1	YFL001W	TY1B-BR	Q12193	1756 aa		4.87	□□□□□ -1.63
DEG1	YFL001W	TY1B-GR3	Q12316	1755 aa		4.87	□□□□□ -1.63
DEG1	YFL001W	TY2B-B	Q12491	1770 aa		4.87	□□□□□ -1.63
DEG1	YFL001W	TY1B-OR	Q92393	1755 aa		4.87	□□□□□ -1.63
DEG1	YFL001W	YML133C	Q03099	1374 aa		4.86	□□□□□ -1.63
DEG1	YFL001W	YLL067C	Q07888	1374 aa		4.86	□□□□□ -1.63
DEG1	YFL001W	YLL066C	Q99208	1374 aa		4.86	□□□□□ -1.63
DEG1	YFL001W	RPN13	O13563	156 aa		4.86	□□□□□ -1.63
DEG1	YFL001W	RAP1	P11938	827 aa		4.86	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 37.1 ms