RNA–Protein interactions for RNA: YDR192C

NUP42, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP42, Length 1,293 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP42	YDR192C	YOL087C	Q99247	1116 aa		4.81	□□□□□ -1.64
NUP42	YDR192C	TUS1	Q06412	1307 aa		4.8	□□□□□ -1.64
NUP42	YDR192C	COX1	P00401	534 aa		4.8	□□□□□ -1.64
NUP42	YDR192C	HPR1	P17629	752 aa	Known RBP	4.8	□□□□□ -1.64
NUP42	YDR192C	SRB5	P32585	307 aa		4.8	□□□□□ -1.64
NUP42	YDR192C	PPZ2	P33329	710 aa		4.8	□□□□□ -1.64
NUP42	YDR192C	OCT1	P35999	772 aa		4.8	□□□□□ -1.64
NUP42	YDR192C	NOP16	P40007	231 aa	Known RBP	4.8	□□□□□ -1.64
NUP42	YDR192C	YJR061W	P40355	935 aa		4.8	□□□□□ -1.64
NUP42	YDR192C	ASG1	P40467	964 aa		4.8	□□□□□ -1.64
NUP42	YDR192C	MSY1	P48527	492 aa		4.8	□□□□□ -1.64
NUP42	YDR192C	SMD2	Q06217	110 aa	Known RBP	4.8	□□□□□ -1.64
NUP42	YDR192C	ARO10	Q06408	635 aa		4.8	□□□□□ -1.64
NUP42	YDR192C	CYK3	Q07533	885 aa		4.8	□□□□□ -1.64
NUP42	YDR192C	PLP2	Q12017	286 aa		4.8	□□□□□ -1.64
NUP42	YDR192C	AI5_ALPHA	Q9ZZX1	630 aa		4.8	□□□□□ -1.64
NUP42	YDR192C	HIS4	P00815	799 aa	Known RBP	4.79	□□□□□ -1.64
NUP42	YDR192C	CBP1	P07252	654 aa		4.79	□□□□□ -1.64
NUP42	YDR192C	TUB1	P09733	447 aa	Known RBP	4.79	□□□□□ -1.64
NUP42	YDR192C	RFA2	P26754	273 aa	Known RBP	4.79	□□□□□ -1.64
NUP42	YDR192C	MRP20	P32387	263 aa		4.79	□□□□□ -1.64
NUP42	YDR192C	PAH1	P32567	862 aa		4.79	□□□□□ -1.64
NUP42	YDR192C	GEX2	P36173	615 aa		4.79	□□□□□ -1.64
NUP42	YDR192C	NOP4	P37838	685 aa	Known RBP	4.79	□□□□□ -1.64
NUP42	YDR192C	DPH1	P40487	425 aa	Known RBP	4.79	□□□□□ -1.64
NUP42	YDR192C	MUB1	Q03162	620 aa		4.79	□□□□□ -1.64
NUP42	YDR192C	STP3	Q05937	343 aa		4.79	□□□□□ -1.64
NUP42	YDR192C	COG4	Q06096	861 aa		4.79	□□□□□ -1.64
NUP42	YDR192C	YLH47	Q06493	454 aa		4.79	□□□□□ -1.64
NUP42	YDR192C	YDR056C	Q12025	205 aa		4.79	□□□□□ -1.64
NUP42	YDR192C	Q0010	Q9ZZX9	128 aa		4.79	□□□□□ -1.64
NUP42	YDR192C	SEM1	O94742	89 aa		4.78	□□□□□ -1.64
NUP42	YDR192C	CDC37	P06101	506 aa	Known RBP	4.78	□□□□□ -1.64
NUP42	YDR192C	CDC24	P11433	854 aa	Predicted RBP	4.78	□□□□□ -1.64
NUP42	YDR192C	ERG8	P24521	451 aa		4.78	□□□□□ -1.64
NUP42	YDR192C	PTC6	P25646	442 aa		4.78	□□□□□ -1.64
NUP42	YDR192C	MRX1	P40050	688 aa		4.78	□□□□□ -1.64
NUP42	YDR192C	CSM2	P40465	213 aa		4.78	□□□□□ -1.64
NUP42	YDR192C	AAD10	P47182	288 aa		4.78	□□□□□ -1.64
NUP42	YDR192C	COS5	P47187	383 aa		4.78	□□□□□ -1.64
NUP42	YDR192C	VID30	P53076	958 aa		4.78	□□□□□ -1.64
NUP42	YDR192C	SWA2	Q06677	668 aa		4.78	□□□□□ -1.64
NUP42	YDR192C	LEA1	Q08963	238 aa	Predicted RBP	4.78	□□□□□ -1.64
NUP42	YDR192C	RDL1	Q12305	139 aa	Known RBP	4.78	□□□□□ -1.64
NUP42	YDR192C	OM45	P16547	393 aa		4.77	□□□□□ -1.65
NUP42	YDR192C	MBR1	P23493	339 aa		4.77	□□□□□ -1.65
NUP42	YDR192C	PRO3	P32263	286 aa	Known RBP	4.77	□□□□□ -1.65
NUP42	YDR192C	EFM2	P38347	419 aa		4.77	□□□□□ -1.65
NUP42	YDR192C	RIX1	P38883	763 aa	Predicted RBP	4.77	□□□□□ -1.65
NUP42	YDR192C	SMC2	P38989	1170 aa	Known RBP	4.77	□□□□□ -1.65
NUP42	YDR192C	ERP2	P39704	215 aa		4.77	□□□□□ -1.65
NUP42	YDR192C	SIP4	P46954	829 aa		4.77	□□□□□ -1.65
NUP42	YDR192C	NET1	P47035	1189 aa		4.77	□□□□□ -1.65
NUP42	YDR192C	FMS1	P50264	508 aa		4.77	□□□□□ -1.65
NUP42	YDR192C	LIF1	P53150	421 aa		4.77	□□□□□ -1.65
NUP42	YDR192C	VPS60	Q03390	229 aa		4.77	□□□□□ -1.65
NUP42	YDR192C	TLG2	Q08144	397 aa		4.77	□□□□□ -1.65
NUP42	YDR192C	CET1	O13297	549 aa	Predicted RBP	4.76	□□□□□ -1.65
NUP42	YDR192C	AQY1	P0CD91	305 aa		4.76	□□□□□ -1.65
NUP42	YDR192C	SOF1	P33750	489 aa	Known RBP	4.76	□□□□□ -1.65
NUP42	YDR192C	LHS1	P36016	881 aa		4.76	□□□□□ -1.65
NUP42	YDR192C	UBP13	P38187	747 aa		4.76	□□□□□ -1.65
NUP42	YDR192C	CTM1	P38818	585 aa		4.76	□□□□□ -1.65
NUP42	YDR192C	SEC31	P38968	1273 aa	Known RBP	4.76	□□□□□ -1.65
NUP42	YDR192C	CAJ1	P39101	391 aa		4.76	□□□□□ -1.65
NUP42	YDR192C	YEL068C	P39977	110 aa		4.76	□□□□□ -1.65
NUP42	YDR192C	HMF1	P40037	129 aa	Known RBP	4.76	□□□□□ -1.65
NUP42	YDR192C	SLZ1	P40167	298 aa		4.76	□□□□□ -1.65
NUP42	YDR192C	SAE2	P46946	345 aa		4.76	□□□□□ -1.65
NUP42	YDR192C	VPS75	P53853	264 aa		4.76	□□□□□ -1.65
NUP42	YDR192C	ORM2	Q06144	216 aa		4.76	□□□□□ -1.65
NUP42	YDR192C	CRN1	Q06440	651 aa		4.76	□□□□□ -1.65
NUP42	YDR192C	BSP1	Q06604	576 aa		4.76	□□□□□ -1.65
NUP42	YDR192C	RAD34	Q06665	692 aa		4.76	□□□□□ -1.65
NUP42	YDR192C	YOR389W	Q08912	624 aa		4.76	□□□□□ -1.65
NUP42	YDR192C	LYS21	Q12122	440 aa	Known RBP	4.76	□□□□□ -1.65
NUP42	YDR192C	NOP58	Q12499	511 aa	Known RBP	4.76	□□□□□ -1.65
NUP42	YDR192C	CSR2	Q12734	1121 aa		4.76	□□□□□ -1.65
NUP42	YDR192C	RTP1	Q12751	981 aa		4.76	□□□□□ -1.65
NUP42	YDR192C	YBR085C-A	O43137	85 aa		4.75	□□□□□ -1.65
NUP42	YDR192C	SRP54	P20424	541 aa	Known RBP	4.75	□□□□□ -1.65
NUP42	YDR192C	VPS1	P21576	704 aa	Known RBP	4.75	□□□□□ -1.65
NUP42	YDR192C	RPC53	P25441	422 aa		4.75	□□□□□ -1.65
NUP42	YDR192C	HOT13	P36078	116 aa		4.75	□□□□□ -1.65
NUP42	YDR192C	MUD2	P36084	527 aa	Known RBP	4.75	□□□□□ -1.65
NUP42	YDR192C	YKL023W	P36103	277 aa	Known RBP	4.75	□□□□□ -1.65
NUP42	YDR192C	NTR2	P36118	322 aa	Predicted RBP	4.75	□□□□□ -1.65
NUP42	YDR192C	FTH1	P38310	465 aa		4.75	□□□□□ -1.65
NUP42	YDR192C	KEL1	P38853	1164 aa	Known RBP	4.75	□□□□□ -1.65
NUP42	YDR192C	SPT8	P38915	602 aa		4.75	□□□□□ -1.65
NUP42	YDR192C	TIF4631	P39935	952 aa	Known RBP	4.75	□□□□□ -1.65
NUP42	YDR192C	ZPR1	P53303	486 aa	Known RBP	4.75	□□□□□ -1.65
NUP42	YDR192C	IST1	P53843	298 aa	Predicted RBP	4.75	□□□□□ -1.65
NUP42	YDR192C	GIR2	Q03768	265 aa	Predicted RBP	4.75	□□□□□ -1.65
NUP42	YDR192C	FUS2	Q05670	677 aa		4.75	□□□□□ -1.65
NUP42	YDR192C	HUA2	Q12134	243 aa		4.75	□□□□□ -1.65
NUP42	YDR192C	MED1	Q12321	566 aa		4.75	□□□□□ -1.65
NUP42	YDR192C	YPR117W	Q06116	2489 aa		4.75	□□□□□ -1.65
NUP42	YDR192C	SUI3	P09064	285 aa	Known RBP	4.74	□□□□□ -1.65
NUP42	YDR192C	ILS1	P09436	1072 aa	Known RBP	4.74	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 259.2 ms