RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 SPDYE6P0CI01 402 aa25.02■■□□□ 1.6
PNKP-220ENST00000627232 TGFB2P61812 414 aa25.02■■□□□ 1.6
PNKP-220ENST00000627232 DPYDQ12882 1025 aa25.02■■□□□ 1.6
PNKP-220ENST00000627232 HSD3B7Q9H2F3 369 aa25.02■■□□□ 1.6
PNKP-220ENST00000627232 TMEM60Q9H2L4 133 aa25.02■■□□□ 1.6
PNKP-220ENST00000627232 NRBP1Q9UHY1 535 aa25.02■■□□□ 1.6
PNKP-220ENST00000627232 FAM196BA6NMK8 535 aa25.02■■□□□ 1.6
PNKP-220ENST00000627232 ZBTB5O15062 677 aa25.02■■□□□ 1.6
PNKP-220ENST00000627232 NEMFO60524 1076 aa25.02■■□□□ 1.6
PNKP-220ENST00000627232 SLURP2P0DP57 97 aa25.02■■□□□ 1.6
PNKP-220ENST00000627232 ABCB5Q2M3G0 1257 aa25.02■■□□□ 1.6
PNKP-220ENST00000627232 PDXDC2PQ6P474 469 aa25.02■■□□□ 1.6
PNKP-220ENST00000627232 CCSER1Q9C0I3 900 aa25.02■■□□□ 1.6
PNKP-220ENST00000627232 RIC8AQ9NPQ8 531 aa25.02■■□□□ 1.6
PNKP-220ENST00000627232 ZNF277Q9NRM2 450 aaPredicted RBP25.02■■□□□ 1.6
PNKP-220ENST00000627232 IMPACTQ9P2X3 320 aa25.02■■□□□ 1.6
PNKP-220ENST00000627232 HERC5Q9UII4 1024 aaKnown RBP25.02■■□□□ 1.6
PNKP-220ENST00000627232 SYNPO2Q9UMS6 1093 aa25.02■■□□□ 1.6
PNKP-220ENST00000627232 ERCC5P28715 1186 aaPredicted RBP25.01■■□□□ 1.59
PNKP-220ENST00000627232 AFMP43652 599 aa25.01■■□□□ 1.59
PNKP-220ENST00000627232 ICA1Q05084 483 aa25.01■■□□□ 1.59
PNKP-220ENST00000627232 DLGAP5Q15398 846 aa25.01■■□□□ 1.59
PNKP-220ENST00000627232 TTBK2Q6IQ55 1244 aa25.01■■□□□ 1.59
PNKP-220ENST00000627232 KIAA1524Q8TCG1 905 aa25.01■■□□□ 1.59
PNKP-220ENST00000627232 COA7Q96BR5 231 aa25.01■■□□□ 1.59
PNKP-220ENST00000627232 AK8Q96MA6 479 aa25.01■■□□□ 1.59
PNKP-220ENST00000627232 GTPBP6O43824 516 aaPredicted RBP25■■□□□ 1.59
PNKP-220ENST00000627232 RAD17O75943 681 aa25■■□□□ 1.59
PNKP-220ENST00000627232 OR52Z1P0C646 297 aa25■■□□□ 1.59
PNKP-220ENST00000627232 SEPT2Q15019 361 aa25■■□□□ 1.59
PNKP-220ENST00000627232 SLFN13Q68D06 897 aa25■■□□□ 1.59
PNKP-220ENST00000627232 NIM1KQ8IY84 436 aa25■■□□□ 1.59
PNKP-220ENST00000627232 OGFOD1Q8N543 542 aa25■■□□□ 1.59
PNKP-220ENST00000627232 MTMR14Q8NCE2 650 aa25■■□□□ 1.59
PNKP-220ENST00000627232 GMCL1P1Q8NEA9 526 aa25■■□□□ 1.59
PNKP-220ENST00000627232 AGBL3Q8NEM8 1001 aa25■■□□□ 1.59
PNKP-220ENST00000627232 ENOX1Q8TC92 643 aaKnown RBP25■■□□□ 1.59
PNKP-220ENST00000627232 IFNKQ9P0W0 207 aa25■■□□□ 1.59
PNKP-220ENST00000627232 PIM2Q9P1W9 311 aa25■■□□□ 1.59
PNKP-220ENST00000627232 BIN2Q9UBW5 565 aaPredicted RBP25■■□□□ 1.59
PNKP-220ENST00000627232 ZNRF3Q9ULT6 936 aa25■■□□□ 1.59
PNKP-220ENST00000627232 CBFA2T2O43439 604 aa24.99■■□□□ 1.59
PNKP-220ENST00000627232 LMOD1P29536 600 aaPredicted RBP24.99■■□□□ 1.59
PNKP-220ENST00000627232 FANCCQ00597 558 aa24.99■■□□□ 1.59
PNKP-220ENST00000627232 DHX8Q14562 1220 aaKnown RBP24.99■■□□□ 1.59
PNKP-220ENST00000627232 CCDC144BQ3MJ40 725 aa24.99■■□□□ 1.59
PNKP-220ENST00000627232 RBM26Q5T8P6 1007 aaKnown RBP24.99■■□□□ 1.59
PNKP-220ENST00000627232 KCTD1Q719H9 257 aa24.99■■□□□ 1.59
PNKP-220ENST00000627232 CCDC125Q86Z20 511 aa24.99■■□□□ 1.59
PNKP-220ENST00000627232 SIAH1Q8IUQ4 282 aa24.99■■□□□ 1.59
PNKP-220ENST00000627232 TBCKQ8TEA7 893 aa24.99■■□□□ 1.59
PNKP-220ENST00000627232 CSRNP1Q96S65 589 aa24.99■■□□□ 1.59
PNKP-220ENST00000627232 XPO4Q9C0E2 1151 aaKnown RBP24.99■■□□□ 1.59
PNKP-220ENST00000627232 GLT8D2Q9H1C3 349 aa24.99■■□□□ 1.59
PNKP-220ENST00000627232 SPTLC3Q9NUV7 552 aa24.99■■□□□ 1.59
PNKP-220ENST00000627232 ZNF70Q9UC06 446 aaPredicted RBP24.99■■□□□ 1.59
PNKP-220ENST00000627232 CCNT1O60563 726 aaKnown RBP24.98■■□□□ 1.59
PNKP-220ENST00000627232 SLC1A4P43007 532 aa24.98■■□□□ 1.59
PNKP-220ENST00000627232 NOLC1Q14978 699 aaKnown RBP eCLIP24.98■■□□□ 1.59
PNKP-220ENST00000627232 LETM2Q2VYF4 491 aa24.98■■□□□ 1.59
PNKP-220ENST00000627232 FKBP1CQ5VVH2 108 aa24.98■■□□□ 1.59
PNKP-220ENST00000627232 JAKMIP3Q5VZ66 844 aa24.98■■□□□ 1.59
PNKP-220ENST00000627232 FAM151AQ8WW52 585 aa24.98■■□□□ 1.59
PNKP-220ENST00000627232 BRCA1P38398 1863 aaKnown RBP24.98■■□□□ 1.59
PNKP-220ENST00000627232 FER1L6Q2WGJ9 1857 aa24.98■■□□□ 1.59
PNKP-220ENST00000627232 USP17L10C9JJH3 530 aa24.97■■□□□ 1.59
PNKP-220ENST00000627232 PPP1R11O60927 126 aaPredicted RBP24.97■■□□□ 1.59
PNKP-220ENST00000627232 GSDMDP57764 484 aa24.97■■□□□ 1.59
PNKP-220ENST00000627232 SPDYE2Q495Y8 402 aa24.97■■□□□ 1.59
PNKP-220ENST00000627232 GMCL1Q96IK5 515 aa24.97■■□□□ 1.59
PNKP-220ENST00000627232 DISC1Q9NRI5 854 aa24.97■■□□□ 1.59
PNKP-220ENST00000627232 UBA7P41226 1012 aa24.96■■□□□ 1.59
PNKP-220ENST00000627232 CLK2P49760 499 aaKnown RBP24.96■■□□□ 1.59
PNKP-220ENST00000627232 MRPL12P52815 198 aaKnown RBP24.96■■□□□ 1.59
PNKP-220ENST00000627232 CUL5Q93034 780 aa24.96■■□□□ 1.59
PNKP-220ENST00000627232 TMEM260Q9NX78 707 aa24.96■■□□□ 1.59
PNKP-220ENST00000627232 PYCARDQ9ULZ3 195 aa24.96■■□□□ 1.59
PNKP-220ENST00000627232 MYL1P05976 194 aa24.96■■□□□ 1.59
PNKP-220ENST00000627232 SLC16A2P36021 539 aa24.96■■□□□ 1.59
PNKP-220ENST00000627232 STAT6P42226 847 aa24.96■■□□□ 1.59
PNKP-220ENST00000627232 SHROOM1Q2M3G4 852 aaPredicted RBP24.96■■□□□ 1.59
PNKP-220ENST00000627232 CUEDC2Q9H467 287 aa24.96■■□□□ 1.59
PNKP-220ENST00000627232 FANCLQ9NW38 375 aa24.96■■□□□ 1.59
PNKP-220ENST00000627232 TCP10L2B9ZVM9 353 aa24.95■■□□□ 1.58
PNKP-220ENST00000627232 GDF11O95390 407 aa24.95■■□□□ 1.58
PNKP-220ENST00000627232 SEMA3FQ13275 785 aa24.95■■□□□ 1.58
PNKP-220ENST00000627232 LRRC8AQ8IWT6 810 aa24.95■■□□□ 1.58
PNKP-220ENST00000627232 CACTINQ8WUQ7 758 aaKnown RBP24.95■■□□□ 1.58
PNKP-220ENST00000627232 XPO5Q9HAV4 1204 aaKnown RBP eCLIP24.95■■□□□ 1.58
PNKP-220ENST00000627232 MAGEF1Q9HAY2 307 aa24.95■■□□□ 1.58
PNKP-220ENST00000627232 CNTNAP1P78357 1384 aa24.94■■□□□ 1.58
PNKP-220ENST00000627232 F5H6K3 240 aa24.94■■□□□ 1.58
PNKP-220ENST00000627232 ATP1A3P13637 1013 aa24.94■■□□□ 1.58
PNKP-220ENST00000627232 POLD1P28340 1107 aa24.94■■□□□ 1.58
PNKP-220ENST00000627232 KLRC3Q07444 240 aa24.94■■□□□ 1.58
PNKP-220ENST00000627232 KARSQ15046 597 aaKnown RBP24.94■■□□□ 1.58
PNKP-220ENST00000627232 RRAGBQ5VZM2 374 aa24.94■■□□□ 1.58
PNKP-220ENST00000627232 RMND1Q9NWS8 449 aa24.94■■□□□ 1.58
PNKP-220ENST00000627232 GH2P01242 217 aa24.93■■□□□ 1.58
PNKP-220ENST00000627232 MMP14P50281 582 aa24.93■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms