RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 RANBP17Q9H2T7 1088 aaKnown RBP21.3■■□□□ 1
COL9A3-214ENST00000490398 SENP2Q9HC62 589 aa21.3■■□□□ 1
COL9A3-214ENST00000490398 DNAJC25-GNG10A0A024R161 153 aa21.29■■□□□ 1
COL9A3-214ENST00000490398 SEC23AQ15436 765 aa21.29■■□□□ 1
COL9A3-214ENST00000490398 MUM1L1Q5H9M0 696 aa21.29■■□□□ 1
COL9A3-214ENST00000490398 ANO1Q5XXA6 986 aa21.29■■□□□ 1
COL9A3-214ENST00000490398 UBA5Q9GZZ9 404 aa21.29■■□□□ 1
COL9A3-214ENST00000490398 CNNM2Q9H8M5 875 aa21.29■■□□□ 1
COL9A3-214ENST00000490398 RNF146Q9NTX7 359 aa21.29■■□□□ 1
COL9A3-214ENST00000490398 FDX1P10109 184 aa21.28■■□□□ 1
COL9A3-214ENST00000490398 ALAS1P13196 640 aa21.28■■□□□ 1
COL9A3-214ENST00000490398 CNGA1P29973 690 aa21.28■■□□□ 1
COL9A3-214ENST00000490398 DHX30Q7L2E3 1194 aaKnown RBP eCLIP21.28■■□□□ 1
COL9A3-214ENST00000490398 CHST3Q7LGC8 479 aa21.28■■□□□ 1
COL9A3-214ENST00000490398 KAT14Q9H8E8 782 aa21.28■■□□□ 1
COL9A3-214ENST00000490398 DDX20Q9UHI6 824 aaKnown RBP21.28■■□□□ 1
COL9A3-214ENST00000490398 NEFLP07196 543 aa21.27■■□□□ 1
COL9A3-214ENST00000490398 CNTN2Q02246 1040 aa21.27■■□□□ 1
COL9A3-214ENST00000490398 ANKRD35Q8N283 1001 aa21.27■■□□□ 1
COL9A3-214ENST00000490398 CHST13Q8NET6 341 aa21.27■■□□□ 1
COL9A3-214ENST00000490398 DDX11Q96FC9 970 aa21.27■■□□□ 1
COL9A3-214ENST00000490398 TRERF1Q96PN7 1200 aa21.27■■□□□ 1
COL9A3-214ENST00000490398 TINF2Q9BSI4 451 aa21.27■■□□□ 1
COL9A3-214ENST00000490398 SLC5A4Q9NY91 659 aa21.27■■□□□ 1
COL9A3-214ENST00000490398 DDX49Q9Y6V7 483 aaKnown RBP21.27■■□□□ 1
COL9A3-214ENST00000490398 ZNFX1Q9P2E3 1918 aaKnown RBP21.27■■□□□ 1
COL9A3-214ENST00000490398 NT5C2P49902 561 aa21.26■□□□□ 0.99
COL9A3-214ENST00000490398 ANTXR2P58335 489 aa21.26■□□□□ 0.99
COL9A3-214ENST00000490398 PRPF38BQ5VTL8 546 aaKnown RBP21.26■□□□□ 0.99
COL9A3-214ENST00000490398 PURBQ96QR8 312 aaKnown RBP21.26■□□□□ 0.99
COL9A3-214ENST00000490398 UBAC1Q9BSL1 405 aa21.26■□□□□ 0.99
COL9A3-214ENST00000490398 ACAD9Q9H845 621 aa21.26■□□□□ 0.99
COL9A3-214ENST00000490398 A1CFQ9NQ94 594 aaKnown RBP21.26■□□□□ 0.99
COL9A3-214ENST00000490398 CCPG1Q9ULG6 757 aa21.26■□□□□ 0.99
COL9A3-214ENST00000490398 DIS3Q9Y2L1 958 aaKnown RBP21.26■□□□□ 0.99
COL9A3-214ENST00000490398 DNAH12Q6ZR08 3092 aa21.26■□□□□ 0.99
COL9A3-214ENST00000490398 ICAM1P05362 532 aa21.25■□□□□ 0.99
COL9A3-214ENST00000490398 CCDC178Q5BJE1 867 aa21.25■□□□□ 0.99
COL9A3-214ENST00000490398 MB21D2Q8IYB1 491 aaPredicted RBP21.25■□□□□ 0.99
COL9A3-214ENST00000490398 ANO2Q9NQ90 1003 aa21.25■□□□□ 0.99
COL9A3-214ENST00000490398 GPHNQ9NQX3 736 aaPredicted RBP21.25■□□□□ 0.99
COL9A3-214ENST00000490398 FBXO40Q9UH90 709 aa21.25■□□□□ 0.99
COL9A3-214ENST00000490398 ASTN1O14525 1302 aa21.25■□□□□ 0.99
COL9A3-214ENST00000490398 SOWAHBA6NEL2 793 aa21.24■□□□□ 0.99
COL9A3-214ENST00000490398 SLC27A2O14975 620 aa21.24■□□□□ 0.99
COL9A3-214ENST00000490398 SNAI1O95863 264 aaPredicted RBP21.24■□□□□ 0.99
COL9A3-214ENST00000490398 ZNF865P0CJ78 1059 aaPredicted RBP21.24■□□□□ 0.99
COL9A3-214ENST00000490398 IFIT1BQ5T764 474 aaKnown RBP21.24■□□□□ 0.99
COL9A3-214ENST00000490398 KIAA1211Q6ZU35 1233 aa21.24■□□□□ 0.99
COL9A3-214ENST00000490398 NECAB2Q7Z6G3 386 aa21.24■□□□□ 0.99
COL9A3-214ENST00000490398 STAG2Q8N3U4 1231 aa21.24■□□□□ 0.99
COL9A3-214ENST00000490398 FAM133AQ8N9E0 248 aa21.24■□□□□ 0.99
COL9A3-214ENST00000490398 ANKLE1Q8NAG6 615 aa21.24■□□□□ 0.99
COL9A3-214ENST00000490398 PFASO15067 1338 aa21.24■□□□□ 0.99
COL9A3-214ENST00000490398 SEPT4O43236 478 aa21.23■□□□□ 0.99
COL9A3-214ENST00000490398 TRDNQ13061 729 aa21.23■□□□□ 0.99
COL9A3-214ENST00000490398 NECTIN1Q15223 517 aa21.23■□□□□ 0.99
COL9A3-214ENST00000490398 TKFCQ3LXA3 575 aa21.23■□□□□ 0.99
COL9A3-214ENST00000490398 CREB3L3Q68CJ9 461 aa21.23■□□□□ 0.99
COL9A3-214ENST00000490398 NCOA7Q8NI08 942 aa21.23■□□□□ 0.99
COL9A3-214ENST00000490398 DPF3Q92784 378 aa21.23■□□□□ 0.99
COL9A3-214ENST00000490398 LENG1Q96BZ8 264 aaPredicted RBP21.23■□□□□ 0.99
COL9A3-214ENST00000490398 SMCHD1A6NHR9 2005 aa21.22■□□□□ 0.99
COL9A3-214ENST00000490398 PLXNA1Q9UIW2 1896 aa21.22■□□□□ 0.99
COL9A3-214ENST00000490398 NFIBO00712 420 aa21.22■□□□□ 0.99
COL9A3-214ENST00000490398 IFIT3O14879 490 aaKnown RBP21.22■□□□□ 0.99
COL9A3-214ENST00000490398 CDC45O75419 566 aa21.22■□□□□ 0.99
COL9A3-214ENST00000490398 SLC35G1Q2M3R5 365 aa21.22■□□□□ 0.99
COL9A3-214ENST00000490398 GPATCH4Q5T3I0 446 aaKnown RBP21.22■□□□□ 0.99
COL9A3-214ENST00000490398 MAMDC4Q6UXC1 1216 aa21.22■□□□□ 0.99
COL9A3-214ENST00000490398 RALYLQ86SE5 291 aaKnown RBP21.22■□□□□ 0.99
COL9A3-214ENST00000490398 CLEC4DQ8WXI8 215 aa21.22■□□□□ 0.99
COL9A3-214ENST00000490398 C11orf49Q9H6J7 331 aa21.22■□□□□ 0.99
COL9A3-214ENST00000490398 PCDH10Q9P2E7 1040 aa21.22■□□□□ 0.99
COL9A3-214ENST00000490398 H0YGN5 161 aa21.21■□□□□ 0.99
COL9A3-214ENST00000490398 POTEB2H3BUK9 544 aa21.21■□□□□ 0.99
COL9A3-214ENST00000490398 COL6A1P12109 1028 aa21.21■□□□□ 0.99
COL9A3-214ENST00000490398 GJC2Q5T442 439 aaPredicted RBP21.21■□□□□ 0.99
COL9A3-214ENST00000490398 ADGRF4Q8IZF3 695 aa21.21■□□□□ 0.99
COL9A3-214ENST00000490398 CYP39A1Q9NYL5 469 aa21.21■□□□□ 0.99
COL9A3-214ENST00000490398 FRMPD3Q5JV73 1810 aa21.2■□□□□ 0.98
COL9A3-214ENST00000490398 PARP1P09874 1014 aaKnown RBP21.2■□□□□ 0.98
COL9A3-214ENST00000490398 CAPN2P17655 700 aa21.2■□□□□ 0.98
COL9A3-214ENST00000490398 ASPRV1Q53RT3 343 aa21.2■□□□□ 0.98
COL9A3-214ENST00000490398 NSMFQ6X4W1 530 aa21.2■□□□□ 0.98
COL9A3-214ENST00000490398 ZNF467Q7Z7K2 595 aaPredicted RBP21.2■□□□□ 0.98
COL9A3-214ENST00000490398 IGDCC4Q8TDY8 1250 aa21.2■□□□□ 0.98
COL9A3-214ENST00000490398 HTATIP2Q9BUP3 242 aa21.2■□□□□ 0.98
COL9A3-214ENST00000490398 KATNBL1Q9H079 304 aa21.2■□□□□ 0.98
COL9A3-214ENST00000490398 JMJD4Q9H9V9 463 aa21.2■□□□□ 0.98
COL9A3-214ENST00000490398 VAT1LQ9HCJ6 419 aa21.2■□□□□ 0.98
COL9A3-214ENST00000490398 MAD2L2Q9UI95 211 aa21.2■□□□□ 0.98
COL9A3-214ENST00000490398 RANBP2P49792 3224 aaKnown RBP21.19■□□□□ 0.98
COL9A3-214ENST00000490398 ADCY6O43306 1168 aa21.19■□□□□ 0.98
COL9A3-214ENST00000490398 BAATQ14032 418 aaPredicted RBP21.19■□□□□ 0.98
COL9A3-214ENST00000490398 CDC37Q16543 378 aaPredicted RBP21.19■□□□□ 0.98
COL9A3-214ENST00000490398 TMEM67Q5HYA8 995 aa21.19■□□□□ 0.98
COL9A3-214ENST00000490398 SLC30A10Q6XR72 485 aa21.19■□□□□ 0.98
COL9A3-214ENST00000490398 CCDC144CPQ8IYA2 1237 aa21.19■□□□□ 0.98
COL9A3-214ENST00000490398 CDKN2AIPQ9NXV6 580 aaPredicted RBP21.19■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms