RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 SLURP1P55000 103 aa4.77□□□□□ -1.65
DEPDC1-204ENST00000489862 SEZ6Q53EL9 994 aa4.77□□□□□ -1.65
DEPDC1-204ENST00000489862 LDLRAD1Q5T700 205 aa4.77□□□□□ -1.65
DEPDC1-204ENST00000489862 CNTD2Q9H8S5 307 aa4.77□□□□□ -1.65
DEPDC1-204ENST00000489862 PPM1GO15355 546 aaPredicted RBP4.76□□□□□ -1.65
DEPDC1-204ENST00000489862 ATE1O95260 518 aa4.76□□□□□ -1.65
DEPDC1-204ENST00000489862 RAG1P15918 1043 aa4.76□□□□□ -1.65
DEPDC1-204ENST00000489862 CHMP4BP1P59074 171 aa4.76□□□□□ -1.65
DEPDC1-204ENST00000489862 CLCQ05315 142 aa4.76□□□□□ -1.65
DEPDC1-204ENST00000489862 MLECQ14165 292 aa4.76□□□□□ -1.65
DEPDC1-204ENST00000489862 SMN1Q16637 294 aaKnown RBP4.76□□□□□ -1.65
DEPDC1-204ENST00000489862 ADGRF1Q5T601 910 aa4.76□□□□□ -1.65
DEPDC1-204ENST00000489862 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.76□□□□□ -1.65
DEPDC1-204ENST00000489862 GK5Q6ZS86 529 aa4.76□□□□□ -1.65
DEPDC1-204ENST00000489862 NLGN1Q8N2Q7 840 aa4.76□□□□□ -1.65
DEPDC1-204ENST00000489862 MZB1Q8WU39 189 aa4.76□□□□□ -1.65
DEPDC1-204ENST00000489862 SAMD11Q96NU1 681 aa4.76□□□□□ -1.65
DEPDC1-204ENST00000489862 EBF1Q9UH73 591 aa4.76□□□□□ -1.65
DEPDC1-204ENST00000489862 MCM4P33991 863 aa4.75□□□□□ -1.65
DEPDC1-204ENST00000489862 CLEC16AQ2KHT3 1053 aa4.75□□□□□ -1.65
DEPDC1-204ENST00000489862 OVOS1Q6IE37 1185 aa4.75□□□□□ -1.65
DEPDC1-204ENST00000489862 TMEM87AQ8NBN3 555 aa4.75□□□□□ -1.65
DEPDC1-204ENST00000489862 ANTXR1Q9H6X2 564 aa4.75□□□□□ -1.65
DEPDC1-204ENST00000489862 EHMT1Q9H9B1 1298 aa4.75□□□□□ -1.65
DEPDC1-204ENST00000489862 GMIPQ9P107 970 aa4.75□□□□□ -1.65
DEPDC1-204ENST00000489862 ABLIM1O14639 778 aa4.75□□□□□ -1.65
DEPDC1-204ENST00000489862 TEKQ02763 1124 aa4.75□□□□□ -1.65
DEPDC1-204ENST00000489862 APOBRQ0VD83 1088 aa4.75□□□□□ -1.65
DEPDC1-204ENST00000489862 NMIQ13287 307 aaPredicted RBP4.75□□□□□ -1.65
DEPDC1-204ENST00000489862 SNW1Q13573 536 aaKnown RBP4.75□□□□□ -1.65
DEPDC1-204ENST00000489862 ATG4CQ96DT6 458 aa4.75□□□□□ -1.65
DEPDC1-204ENST00000489862 LOXL4Q96JB6 756 aa4.75□□□□□ -1.65
DEPDC1-204ENST00000489862 TNFRSF18Q9Y5U5 241 aa4.75□□□□□ -1.65
DEPDC1-204ENST00000489862 TCF3P15923 654 aa4.74□□□□□ -1.65
DEPDC1-204ENST00000489862 PURAQ00577 322 aaKnown RBP4.74□□□□□ -1.65
DEPDC1-204ENST00000489862 DUSP4Q13115 394 aa4.74□□□□□ -1.65
DEPDC1-204ENST00000489862 NBPF12Q5TAG4 269 aaPredicted RBP4.74□□□□□ -1.65
DEPDC1-204ENST00000489862 CDCP2Q5VXM1 449 aa4.74□□□□□ -1.65
DEPDC1-204ENST00000489862 TMC3Q7Z5M5 1100 aa4.74□□□□□ -1.65
DEPDC1-204ENST00000489862 ANKS4BQ8N8V4 417 aa4.74□□□□□ -1.65
DEPDC1-204ENST00000489862 NKD1Q969G9 470 aa4.74□□□□□ -1.65
DEPDC1-204ENST00000489862 EAF1Q96JC9 268 aaPredicted RBP4.74□□□□□ -1.65
DEPDC1-204ENST00000489862 ZNF512BQ96KM6 892 aaPredicted RBP4.74□□□□□ -1.65
DEPDC1-204ENST00000489862 C8orf49Q96NF6 230 aa4.74□□□□□ -1.65
DEPDC1-204ENST00000489862 HDAC8Q9BY41 377 aa4.74□□□□□ -1.65
DEPDC1-204ENST00000489862 KRTAP3-1Q9BYR8 98 aa4.74□□□□□ -1.65
DEPDC1-204ENST00000489862 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP4.74□□□□□ -1.65
DEPDC1-204ENST00000489862 ASCC2Q9H1I8 757 aaPredicted RBP4.74□□□□□ -1.65
DEPDC1-204ENST00000489862 CNNM2Q9H8M5 875 aa4.74□□□□□ -1.65
DEPDC1-204ENST00000489862 VIPR1P32241 457 aa4.73□□□□□ -1.65
DEPDC1-204ENST00000489862 NBPF9Q3BBW0 867 aa4.73□□□□□ -1.65
DEPDC1-204ENST00000489862 NT5DC1Q5TFE4 455 aa4.73□□□□□ -1.65
DEPDC1-204ENST00000489862 NLRC3Q7RTR2 1065 aa4.73□□□□□ -1.65
DEPDC1-204ENST00000489862 USHBP1Q8N6Y0 703 aa4.73□□□□□ -1.65
DEPDC1-204ENST00000489862 CHST13Q8NET6 341 aa4.73□□□□□ -1.65
DEPDC1-204ENST00000489862 SH3RF3Q8TEJ3 882 aaPredicted RBP4.73□□□□□ -1.65
DEPDC1-204ENST00000489862 DVL3Q92997 716 aaPredicted RBP4.73□□□□□ -1.65
DEPDC1-204ENST00000489862 NT5C1AQ9BXI3 368 aa4.73□□□□□ -1.65
DEPDC1-204ENST00000489862 BACH2Q9BYV9 841 aa4.73□□□□□ -1.65
DEPDC1-204ENST00000489862 ZNF165P49910 485 aa4.72□□□□□ -1.65
DEPDC1-204ENST00000489862 GALK1P51570 392 aa4.72□□□□□ -1.65
DEPDC1-204ENST00000489862 CDR1P51861 262 aa4.72□□□□□ -1.65
DEPDC1-204ENST00000489862 INHBEP58166 350 aa4.72□□□□□ -1.65
DEPDC1-204ENST00000489862 TGFB2P61812 414 aa4.72□□□□□ -1.65
DEPDC1-204ENST00000489862 RNF4P78317 190 aa4.72□□□□□ -1.65
DEPDC1-204ENST00000489862 SLITRK4Q8IW52 837 aa4.72□□□□□ -1.65
DEPDC1-204ENST00000489862 REXO1Q8N1G1 1221 aaKnown RBP4.72□□□□□ -1.65
DEPDC1-204ENST00000489862 ENOX1Q8TC92 643 aaKnown RBP4.72□□□□□ -1.65
DEPDC1-204ENST00000489862 SYTL5Q8TDW5 730 aaPredicted RBP4.72□□□□□ -1.65
DEPDC1-204ENST00000489862 TCTN2Q96GX1 697 aa4.72□□□□□ -1.65
DEPDC1-204ENST00000489862 SPON2Q9BUD6 331 aa4.72□□□□□ -1.65
DEPDC1-204ENST00000489862 FOXP3Q9BZS1 431 aa4.72□□□□□ -1.65
DEPDC1-204ENST00000489862 BCL11AQ9H165 835 aa4.72□□□□□ -1.65
DEPDC1-204ENST00000489862 MINPP1Q9UNW1 487 aa4.72□□□□□ -1.65
DEPDC1-204ENST00000489862 ZNF281Q9Y2X9 895 aa4.72□□□□□ -1.65
DEPDC1-204ENST00000489862 NME1P15531 152 aaKnown RBP4.72□□□□□ -1.65
DEPDC1-204ENST00000489862 RPL10P27635 214 aaKnown RBP4.72□□□□□ -1.65
DEPDC1-204ENST00000489862 KIAA0825Q8IV33 1275 aa4.72□□□□□ -1.65
DEPDC1-204ENST00000489862 TMEM192Q8IY95 271 aa4.72□□□□□ -1.65
DEPDC1-204ENST00000489862 DAGLBQ8NCG7 672 aa4.72□□□□□ -1.65
DEPDC1-204ENST00000489862 LINC01599Q8WXQ3 324 aa4.72□□□□□ -1.65
DEPDC1-204ENST00000489862 SPATA32Q96LK8 384 aa4.72□□□□□ -1.65
DEPDC1-204ENST00000489862 G6PC3Q9BUM1 346 aa4.72□□□□□ -1.65
DEPDC1-204ENST00000489862 PRDM14Q9GZV8 571 aa4.72□□□□□ -1.65
DEPDC1-204ENST00000489862 VPS11Q9H270 941 aa4.72□□□□□ -1.65
DEPDC1-204ENST00000489862 FAM86C2PA6NEL3 165 aa4.71□□□□□ -1.66
DEPDC1-204ENST00000489862 CLEC3AO75596 197 aa4.71□□□□□ -1.66
DEPDC1-204ENST00000489862 PRAMEF1O95521 474 aa4.71□□□□□ -1.66
DEPDC1-204ENST00000489862 ZNF76P36508 570 aa4.71□□□□□ -1.66
DEPDC1-204ENST00000489862 ZNF394Q53GI3 561 aa4.71□□□□□ -1.66
DEPDC1-204ENST00000489862 ZPBP2Q6X784 338 aa4.71□□□□□ -1.66
DEPDC1-204ENST00000489862 RNF111Q6ZNA4 994 aa4.71□□□□□ -1.66
DEPDC1-204ENST00000489862 ZNF662Q6ZS27 426 aa4.71□□□□□ -1.66
DEPDC1-204ENST00000489862 WAPLQ7Z5K2 1190 aa4.71□□□□□ -1.66
DEPDC1-204ENST00000489862 SPRED1Q7Z699 444 aa4.71□□□□□ -1.66
DEPDC1-204ENST00000489862 SHISA4Q96DD7 197 aa4.71□□□□□ -1.66
DEPDC1-204ENST00000489862 RBM15Q96T37 977 aaKnown RBP eCLIP4.71□□□□□ -1.66
DEPDC1-204ENST00000489862 SLC9A7Q96T83 725 aa4.71□□□□□ -1.66
DEPDC1-204ENST00000489862 TCFL5Q9UL49 500 aa4.71□□□□□ -1.66
DEPDC1-204ENST00000489862 PCDHGB7Q9Y5F8 929 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms