RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 HTTP42858 3142 aa20.28■□□□□ 0.84
MDC1-206ENST00000489540 ICAM1P05362 532 aa20.27■□□□□ 0.84
MDC1-206ENST00000489540 GOLGA8HP0CJ92 632 aa20.27■□□□□ 0.84
MDC1-206ENST00000489540 GJA8P48165 433 aa20.27■□□□□ 0.84
MDC1-206ENST00000489540 ANTXR2P58335 489 aa20.27■□□□□ 0.84
MDC1-206ENST00000489540 SNAP25P60880 206 aa20.27■□□□□ 0.84
MDC1-206ENST00000489540 TRIM32Q13049 653 aa20.27■□□□□ 0.84
MDC1-206ENST00000489540 KRT32Q14532 448 aa20.27■□□□□ 0.84
MDC1-206ENST00000489540 TMEM87BQ96K49 555 aa20.27■□□□□ 0.84
MDC1-206ENST00000489540 FLRT1Q9NZU1 646 aa20.27■□□□□ 0.84
MDC1-206ENST00000489540 EPB41L2O43491 1005 aaKnown RBP20.27■□□□□ 0.83
MDC1-206ENST00000489540 PRC1O43663 620 aa20.27■□□□□ 0.83
MDC1-206ENST00000489540 PRKAR2AP13861 404 aaKnown RBP20.27■□□□□ 0.83
MDC1-206ENST00000489540 MLLT1Q03111 559 aaPredicted RBP20.27■□□□□ 0.83
MDC1-206ENST00000489540 CACNB2Q08289 660 aaPredicted RBP20.27■□□□□ 0.83
MDC1-206ENST00000489540 ANKRD35Q8N283 1001 aa20.27■□□□□ 0.83
MDC1-206ENST00000489540 TRERF1Q96PN7 1200 aa20.27■□□□□ 0.83
MDC1-206ENST00000489540 UBA5Q9GZZ9 404 aa20.27■□□□□ 0.83
MDC1-206ENST00000489540 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.27■□□□□ 0.83
MDC1-206ENST00000489540 ACAD9Q9H845 621 aa20.27■□□□□ 0.83
MDC1-206ENST00000489540 PAK6Q9NQU5 681 aaPredicted RBP20.27■□□□□ 0.83
MDC1-206ENST00000489540 CCPG1Q9ULG6 757 aa20.27■□□□□ 0.83
MDC1-206ENST00000489540 SGPL1O95470 568 aa20.26■□□□□ 0.83
MDC1-206ENST00000489540 IGHA2P01877 340 aa20.26■□□□□ 0.83
MDC1-206ENST00000489540 PGK2P07205 417 aa20.26■□□□□ 0.83
MDC1-206ENST00000489540 ZNF792Q3KQV3 632 aa20.26■□□□□ 0.83
MDC1-206ENST00000489540 CATIPQ7Z7H3 387 aa20.26■□□□□ 0.83
MDC1-206ENST00000489540 U2AF1L4Q8WU68 220 aaKnown RBP20.26■□□□□ 0.83
MDC1-206ENST00000489540 MAML3Q96JK9 1138 aa20.26■□□□□ 0.83
MDC1-206ENST00000489540 NEK1Q96PY6 1258 aa20.26■□□□□ 0.83
MDC1-206ENST00000489540 RNF146Q9NTX7 359 aa20.26■□□□□ 0.83
MDC1-206ENST00000489540 ALAS1P13196 640 aa20.25■□□□□ 0.83
MDC1-206ENST00000489540 KCNB2Q92953 911 aa20.25■□□□□ 0.83
MDC1-206ENST00000489540 DEFB118Q96PH6 123 aa20.25■□□□□ 0.83
MDC1-206ENST00000489540 HOMER2Q9NSB8 354 aa20.25■□□□□ 0.83
MDC1-206ENST00000489540 PARP14Q460N5 1801 aa20.25■□□□□ 0.83
MDC1-206ENST00000489540 DNAJC25-GNG10A0A024R161 153 aa20.24■□□□□ 0.83
MDC1-206ENST00000489540 CYP2C19P33261 490 aa20.24■□□□□ 0.83
MDC1-206ENST00000489540 HSPA4P34932 840 aa20.24■□□□□ 0.83
MDC1-206ENST00000489540 RASEFQ8IZ41 740 aa20.24■□□□□ 0.83
MDC1-206ENST00000489540 ADGRF4Q8IZF3 695 aa20.24■□□□□ 0.83
MDC1-206ENST00000489540 LY9Q9HBG7 655 aa20.24■□□□□ 0.83
MDC1-206ENST00000489540 SENP2Q9HC62 589 aa20.24■□□□□ 0.83
MDC1-206ENST00000489540 PLXNB2O15031 1838 aa20.23■□□□□ 0.83
MDC1-206ENST00000489540 WDR19Q8NEZ3 1342 aa20.23■□□□□ 0.83
MDC1-206ENST00000489540 PALM3A6NDB9 673 aaPredicted RBP20.23■□□□□ 0.83
MDC1-206ENST00000489540 KLRF2D3W0D1 207 aa20.23■□□□□ 0.83
MDC1-206ENST00000489540 TFRCP02786 760 aaKnown RBP20.23■□□□□ 0.83
MDC1-206ENST00000489540 HMGB1P09429 215 aaKnown RBP20.23■□□□□ 0.83
MDC1-206ENST00000489540 LIFRP42702 1097 aa20.23■□□□□ 0.83
MDC1-206ENST00000489540 TROAPQ12815 778 aa20.23■□□□□ 0.83
MDC1-206ENST00000489540 MSL3Q8N5Y2 521 aaKnown RBP20.23■□□□□ 0.83
MDC1-206ENST00000489540 MAP3K14Q99558 947 aa20.23■□□□□ 0.83
MDC1-206ENST00000489540 MAD2L2Q9UI95 211 aa20.23■□□□□ 0.83
MDC1-206ENST00000489540 KIAA0100Q14667 2235 aaKnown RBP20.22■□□□□ 0.83
MDC1-206ENST00000489540 SH2B2O14492 632 aaPredicted RBP20.22■□□□□ 0.83
MDC1-206ENST00000489540 GRM4Q14833 912 aa20.22■□□□□ 0.83
MDC1-206ENST00000489540 NFXL1Q6ZNB6 911 aa20.22■□□□□ 0.83
MDC1-206ENST00000489540 DHX32Q7L7V1 743 aaKnown RBP20.22■□□□□ 0.83
MDC1-206ENST00000489540 ZNF467Q7Z7K2 595 aaPredicted RBP20.22■□□□□ 0.83
MDC1-206ENST00000489540 STAG2Q8N3U4 1231 aa20.22■□□□□ 0.83
MDC1-206ENST00000489540 CRISPLD2Q9H0B8 497 aa20.22■□□□□ 0.83
MDC1-206ENST00000489540 NRBP1Q9UHY1 535 aa20.22■□□□□ 0.83
MDC1-206ENST00000489540 PFASO15067 1338 aa20.22■□□□□ 0.83
MDC1-206ENST00000489540 CCDC69A6NI79 296 aa20.21■□□□□ 0.83
MDC1-206ENST00000489540 DHX16O60231 1041 aaKnown RBP20.21■□□□□ 0.83
MDC1-206ENST00000489540 DDAH1O94760 285 aa20.21■□□□□ 0.83
MDC1-206ENST00000489540 TINF2Q9BSI4 451 aa20.21■□□□□ 0.83
MDC1-206ENST00000489540 CPVLQ9H3G5 476 aa20.21■□□□□ 0.83
MDC1-206ENST00000489540 VAT1LQ9HCJ6 419 aa20.21■□□□□ 0.83
MDC1-206ENST00000489540 A1CFQ9NQ94 594 aaKnown RBP20.21■□□□□ 0.83
MDC1-206ENST00000489540 POTEB2H3BUK9 544 aa20.2■□□□□ 0.82
MDC1-206ENST00000489540 CCND3P30281 292 aaPredicted RBP20.2■□□□□ 0.82
MDC1-206ENST00000489540 EXOSC10Q01780 885 aaKnown RBP20.2■□□□□ 0.82
MDC1-206ENST00000489540 CDC37Q16543 378 aaPredicted RBP20.2■□□□□ 0.82
MDC1-206ENST00000489540 ADCK5Q3MIX3 580 aa20.2■□□□□ 0.82
MDC1-206ENST00000489540 MUM1L1Q5H9M0 696 aa20.2■□□□□ 0.82
MDC1-206ENST00000489540 ZNF654Q8IZM8 581 aa20.2■□□□□ 0.82
MDC1-206ENST00000489540 SHISA4Q96DD7 197 aa20.2■□□□□ 0.82
MDC1-206ENST00000489540 JMJD4Q9H9V9 463 aa20.2■□□□□ 0.82
MDC1-206ENST00000489540 GPHNQ9NQX3 736 aaPredicted RBP20.2■□□□□ 0.82
MDC1-206ENST00000489540 ZNF236Q9UL36 1845 aa20.2■□□□□ 0.82
MDC1-206ENST00000489540 MSCO60682 206 aa20.19■□□□□ 0.82
MDC1-206ENST00000489540 EIF5BO60841 1220 aaKnown RBP20.19■□□□□ 0.82
MDC1-206ENST00000489540 CALM1P0DP23 149 aa20.19■□□□□ 0.82
MDC1-206ENST00000489540 CALM2P0DP24 149 aa20.19■□□□□ 0.82
MDC1-206ENST00000489540 CALM3P0DP25 149 aa20.19■□□□□ 0.82
MDC1-206ENST00000489540 KIF5BP33176 963 aa20.19■□□□□ 0.82
MDC1-206ENST00000489540 COL9A3Q14050 684 aaPredicted RBP20.19■□□□□ 0.82
MDC1-206ENST00000489540 MAMDC4Q6UXC1 1216 aa20.19■□□□□ 0.82
MDC1-206ENST00000489540 CTCFLQ8NI51 663 aaPredicted RBP20.19■□□□□ 0.82
MDC1-206ENST00000489540 NUP133Q8WUM0 1156 aa20.19■□□□□ 0.82
MDC1-206ENST00000489540 CYP39A1Q9NYL5 469 aa20.19■□□□□ 0.82
MDC1-206ENST00000489540 COL11A1P12107 1806 aaPredicted RBP20.19■□□□□ 0.82
MDC1-206ENST00000489540 CYBAP13498 195 aa20.19■□□□□ 0.82
MDC1-206ENST00000489540 CNGA1P29973 690 aa20.19■□□□□ 0.82
MDC1-206ENST00000489540 NSMFQ6X4W1 530 aa20.19■□□□□ 0.82
MDC1-206ENST00000489540 SGMS1Q86VZ5 419 aa20.19■□□□□ 0.82
MDC1-206ENST00000489540 FAM133AQ8N9E0 248 aa20.19■□□□□ 0.82
MDC1-206ENST00000489540 USP26Q9BXU7 913 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms