RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 USH1GQ495M9 461 aa13□□□□□ -0.33
NPHP4-204ENST00000460696 INTS5Q6P9B9 1019 aaKnown RBP13□□□□□ -0.33
NPHP4-204ENST00000460696 NWD1Q149M9 1564 aa13□□□□□ -0.33
NPHP4-204ENST00000460696 H7C1D1 291 aa12.99□□□□□ -0.33
NPHP4-204ENST00000460696 PPEF1O14829 653 aaPredicted RBP12.99□□□□□ -0.33
NPHP4-204ENST00000460696 TEX33O43247 280 aa12.99□□□□□ -0.33
NPHP4-204ENST00000460696 ATP2B4P23634 1241 aa12.99□□□□□ -0.33
NPHP4-204ENST00000460696 CUL4BQ13620 913 aa12.99□□□□□ -0.33
NPHP4-204ENST00000460696 HLTFQ14527 1009 aaKnown RBP eCLIP12.99□□□□□ -0.33
NPHP4-204ENST00000460696 SRBD1Q8N5C6 995 aaKnown RBP12.99□□□□□ -0.33
NPHP4-204ENST00000460696 COA7Q96BR5 231 aa12.99□□□□□ -0.33
NPHP4-204ENST00000460696 MKRN3Q13064 507 aaKnown RBP12.99□□□□□ -0.33
NPHP4-204ENST00000460696 SYCP3Q8IZU3 236 aa12.99□□□□□ -0.33
NPHP4-204ENST00000460696 NSUN4Q96CB9 384 aaKnown RBP12.99□□□□□ -0.33
NPHP4-204ENST00000460696 PIGSQ96S52 555 aa12.99□□□□□ -0.33
NPHP4-204ENST00000460696 BPIFA3Q9BQP9 254 aa12.99□□□□□ -0.33
NPHP4-204ENST00000460696 MTFR1LQ9H019 292 aa12.99□□□□□ -0.33
NPHP4-204ENST00000460696 CKAP4Q07065 602 aaKnown RBP12.99□□□□□ -0.33
NPHP4-204ENST00000460696 JAKMIP2Q96AA8 810 aa12.99□□□□□ -0.33
NPHP4-204ENST00000460696 NAA15Q9BXJ9 866 aaKnown RBP12.99□□□□□ -0.33
NPHP4-204ENST00000460696 GTPBP4Q9BZE4 634 aaKnown RBP12.99□□□□□ -0.33
NPHP4-204ENST00000460696 NLRC4Q9NPP4 1024 aa12.99□□□□□ -0.33
NPHP4-204ENST00000460696 WTIPA6NIX2 430 aaPredicted RBP12.98□□□□□ -0.33
NPHP4-204ENST00000460696 MCM3P25205 808 aa12.98□□□□□ -0.33
NPHP4-204ENST00000460696 KLRK1P26718 216 aa12.98□□□□□ -0.33
NPHP4-204ENST00000460696 ZYXQ15942 572 aaKnown RBP12.98□□□□□ -0.33
NPHP4-204ENST00000460696 ACRBPQ8NEB7 543 aa12.98□□□□□ -0.33
NPHP4-204ENST00000460696 TAOK3Q9H2K8 898 aa12.98□□□□□ -0.33
NPHP4-204ENST00000460696 RGS17Q9UGC6 210 aaPredicted RBP12.98□□□□□ -0.33
NPHP4-204ENST00000460696 CLRN2A0PK11 232 aa12.98□□□□□ -0.33
NPHP4-204ENST00000460696 GOLGA6L10A6NI86 522 aa12.98□□□□□ -0.33
NPHP4-204ENST00000460696 PP2D1A8MPX8 630 aa12.98□□□□□ -0.33
NPHP4-204ENST00000460696 FMR1Q06787 632 aaKnown RBP eCLIP12.98□□□□□ -0.33
NPHP4-204ENST00000460696 PRPF4BQ13523 1007 aaKnown RBP12.98□□□□□ -0.33
NPHP4-204ENST00000460696 E4F1Q66K89 784 aaPredicted RBP12.98□□□□□ -0.33
NPHP4-204ENST00000460696 STAG2Q8N3U4 1231 aa12.98□□□□□ -0.33
NPHP4-204ENST00000460696 TBCKQ8TEA7 893 aa12.98□□□□□ -0.33
NPHP4-204ENST00000460696 RAPGEF1Q13905 1077 aa12.98□□□□□ -0.33
NPHP4-204ENST00000460696 FBXO38Q6PIJ6 1188 aa12.98□□□□□ -0.33
NPHP4-204ENST00000460696 DGKHQ86XP1 1220 aa12.98□□□□□ -0.33
NPHP4-204ENST00000460696 ZNF579Q8NAF0 562 aaKnown RBP12.98□□□□□ -0.33
NPHP4-204ENST00000460696 GDAP1L1Q96MZ0 367 aa12.98□□□□□ -0.33
NPHP4-204ENST00000460696 VPS18Q9P253 973 aa12.98□□□□□ -0.33
NPHP4-204ENST00000460696 FGFR2P21802 821 aa12.97□□□□□ -0.33
NPHP4-204ENST00000460696 SLC16A2P36021 539 aa12.97□□□□□ -0.33
NPHP4-204ENST00000460696 DCAF17Q5H9S7 520 aaPredicted RBP12.97□□□□□ -0.33
NPHP4-204ENST00000460696 TYW1BQ6NUM6 668 aa12.97□□□□□ -0.33
NPHP4-204ENST00000460696 CCDC65Q8IXS2 484 aa12.97□□□□□ -0.33
NPHP4-204ENST00000460696 HINFPQ9BQA5 517 aa12.97□□□□□ -0.33
NPHP4-204ENST00000460696 LTN1O94822 1766 aa12.97□□□□□ -0.33
NPHP4-204ENST00000460696 FMN2Q9NZ56 1722 aa12.97□□□□□ -0.33
NPHP4-204ENST00000460696 FAM170AA1A519 330 aa12.97□□□□□ -0.33
NPHP4-204ENST00000460696 B4DLN1 442 aa12.97□□□□□ -0.33
NPHP4-204ENST00000460696 CHMP2AO43633 222 aa12.97□□□□□ -0.33
NPHP4-204ENST00000460696 RNASE9P60153 205 aaKnown RBP12.97□□□□□ -0.33
NPHP4-204ENST00000460696 GRAPQ13588 217 aa12.97□□□□□ -0.33
NPHP4-204ENST00000460696 PLS1Q14651 629 aa12.97□□□□□ -0.33
NPHP4-204ENST00000460696 PTPAQ15257 358 aa12.97□□□□□ -0.33
NPHP4-204ENST00000460696 PFKFB3Q16875 520 aaPredicted RBP12.97□□□□□ -0.33
NPHP4-204ENST00000460696 ODF2Q5BJF6 829 aa12.97□□□□□ -0.33
NPHP4-204ENST00000460696 CERS3Q8IU89 383 aa12.97□□□□□ -0.33
NPHP4-204ENST00000460696 GRAPLQ8TC17 118 aaPredicted RBP12.97□□□□□ -0.33
NPHP4-204ENST00000460696 TMEM47Q9BQJ4 181 aa12.97□□□□□ -0.33
NPHP4-204ENST00000460696 EPN1Q9Y6I3 576 aaPredicted RBP12.97□□□□□ -0.33
NPHP4-204ENST00000460696 CAMTA1Q9Y6Y1 1673 aa12.97□□□□□ -0.33
NPHP4-204ENST00000460696 CDK8P49336 464 aa12.97□□□□□ -0.33
NPHP4-204ENST00000460696 TOGARAM2Q6ZUX3 1019 aa12.97□□□□□ -0.33
NPHP4-204ENST00000460696 SLC35F6Q8N357 371 aa12.97□□□□□ -0.33
NPHP4-204ENST00000460696 PKD2L1Q9P0L9 805 aa12.97□□□□□ -0.33
NPHP4-204ENST00000460696 TUBE1Q9UJT0 475 aa12.97□□□□□ -0.33
NPHP4-204ENST00000460696 EFCAB8A8MWE9 144 aa12.96□□□□□ -0.33
NPHP4-204ENST00000460696 SEC31AO94979 1220 aaKnown RBP12.96□□□□□ -0.33
NPHP4-204ENST00000460696 KRT31Q15323 416 aa12.96□□□□□ -0.33
NPHP4-204ENST00000460696 NTRK3Q16288 839 aa12.96□□□□□ -0.33
NPHP4-204ENST00000460696 NCAPH2Q6IBW4 605 aa12.96□□□□□ -0.33
NPHP4-204ENST00000460696 PRR5LQ6MZQ0 368 aa12.96□□□□□ -0.33
NPHP4-204ENST00000460696 RRAGAQ7L523 313 aa12.96□□□□□ -0.33
NPHP4-204ENST00000460696 CCDC51Q96ER9 411 aa12.96□□□□□ -0.33
NPHP4-204ENST00000460696 TUBGCP2Q9BSJ2 902 aa12.96□□□□□ -0.33
NPHP4-204ENST00000460696 MTA3Q9BTC8 594 aa12.96□□□□□ -0.33
NPHP4-204ENST00000460696 PCDHA12Q9UN75 941 aa12.96□□□□□ -0.33
NPHP4-204ENST00000460696 TRIM49BA6NDI0 452 aa12.96□□□□□ -0.33
NPHP4-204ENST00000460696 SMIM22K7EJ46 135 aa12.96□□□□□ -0.33
NPHP4-204ENST00000460696 ENC1O14682 589 aa12.96□□□□□ -0.33
NPHP4-204ENST00000460696 DNM2P50570 870 aa12.96□□□□□ -0.33
NPHP4-204ENST00000460696 TNIP1Q15025 636 aa12.96□□□□□ -0.33
NPHP4-204ENST00000460696 SF3B3Q15393 1217 aaKnown RBP12.96□□□□□ -0.33
NPHP4-204ENST00000460696 ZNF658Q5TYW1 1059 aaPredicted RBP12.96□□□□□ -0.33
NPHP4-204ENST00000460696 ADGRA1Q86SQ6 560 aa12.96□□□□□ -0.33
NPHP4-204ENST00000460696 MYCP01106 439 aaPredicted RBP12.96□□□□□ -0.33
NPHP4-204ENST00000460696 MAGEA1P43355 309 aa12.96□□□□□ -0.33
NPHP4-204ENST00000460696 CCDC93Q567U6 631 aa12.96□□□□□ -0.33
NPHP4-204ENST00000460696 TEKT1Q969V4 418 aa12.96□□□□□ -0.33
NPHP4-204ENST00000460696 PSTPIP2Q9H939 334 aa12.96□□□□□ -0.33
NPHP4-204ENST00000460696 GYS1P13807 737 aa12.96□□□□□ -0.34
NPHP4-204ENST00000460696 PLCG1P19174 1290 aa12.96□□□□□ -0.34
NPHP4-204ENST00000460696 AOC3Q16853 763 aa12.96□□□□□ -0.34
NPHP4-204ENST00000460696 KCTD1Q719H9 257 aa12.96□□□□□ -0.34
NPHP4-204ENST00000460696 ANKRD13CQ8N6S4 541 aa12.96□□□□□ -0.34
NPHP4-204ENST00000460696 PPP1R2P41236 205 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms