RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 BPIFB4P59827 614 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 ESRRGP62508 458 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 PDE1CQ14123 709 aaPredicted RBP3.62□□□□□ -1.83
CSMD3-202ENST00000339701 TAF1CQ15572 869 aaPredicted RBP3.62□□□□□ -1.83
CSMD3-202ENST00000339701 CEP85LQ5SZL2 805 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 CEP120Q8N960 986 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 NLRP7Q8WX94 980 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 TTC25Q96NG3 672 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 RPS6KC1Q96S38 1066 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 MPP6Q9NZW5 540 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 TMEM88BA6NKF7 163 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 MMP10P09238 476 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 CTNNA2P26232 953 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 YWHAEP62258 255 aaKnown RBP3.62□□□□□ -1.83
CSMD3-202ENST00000339701 TSC22D1Q15714 1073 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 B4GALNT3Q6L9W6 998 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 TBC1D9Q6ZT07 1266 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 HAUS6Q7Z4H7 955 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 DDX42Q86XP3 938 aaKnown RBP eCLIP3.62□□□□□ -1.83
CSMD3-202ENST00000339701 ZNF592Q92610 1267 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP3.62□□□□□ -1.83
CSMD3-202ENST00000339701 BACH1O14867 736 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 ALDH1L1O75891 902 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 GNA14O95837 355 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 RPLP2P05387 115 aaKnown RBP3.62□□□□□ -1.83
CSMD3-202ENST00000339701 CASQ1P31415 396 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 RRS1Q15050 365 aaKnown RBP3.62□□□□□ -1.83
CSMD3-202ENST00000339701 LMBR1LQ6UX01 489 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 ANKRD35Q8N283 1001 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 EFCC1Q9HA90 598 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 ODF2LQ9ULJ1 636 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 ADAMTSL3P82987 1691 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 ADAMTS13Q76LX8 1427 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 TNPO2O14787 897 aaKnown RBP3.62□□□□□ -1.83
CSMD3-202ENST00000339701 UQCRFS1P1P0C7P4 283 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 COPB2P35606 906 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 TMED1Q13445 227 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 NFKBIBQ15653 356 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 TRIM60Q495X7 471 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 HDXQ7Z353 690 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 KIFAP3Q92845 792 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 PARK7Q99497 189 aaKnown RBP3.62□□□□□ -1.83
CSMD3-202ENST00000339701 MTA3Q9BTC8 594 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 SPZ1Q9BXG8 430 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 RAB17Q9H0T7 212 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 C6orf50Q9HD87 102 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 BCCIPQ9P287 314 aaKnown RBP eCLIP3.62□□□□□ -1.83
CSMD3-202ENST00000339701 KIF13BQ9NQT8 1826 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 RGPD8O14715 1765 aaPredicted RBP3.62□□□□□ -1.83
CSMD3-202ENST00000339701 APOA4P06727 396 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 ATP6V1E1P36543 226 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 MKRN3Q13064 507 aaKnown RBP3.62□□□□□ -1.83
CSMD3-202ENST00000339701 TEDDM1Q5T9Z0 273 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 PATL1Q86TB9 770 aaKnown RBP3.62□□□□□ -1.83
CSMD3-202ENST00000339701 PPP1R14CQ8TAE6 165 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 TRIM4Q9C037 500 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 DIABLOQ9NR28 239 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 SPATS2LQ9NUQ6 558 aaKnown RBP3.62□□□□□ -1.83
CSMD3-202ENST00000339701 NKIRAS1Q9NYS0 192 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 CAMTA1Q9Y6Y1 1673 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 PTPRUQ92729 1446 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 CTAGE15A4D2H0 777 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 SMARCA5O60264 1052 aaPredicted RBP3.62□□□□□ -1.83
CSMD3-202ENST00000339701 LMNAP02545 664 aaKnown RBP3.62□□□□□ -1.83
CSMD3-202ENST00000339701 CTAGE8P0CG41 777 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 FSTL1Q12841 308 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 ZKSCAN8Q15776 578 aaPredicted RBP3.62□□□□□ -1.83
CSMD3-202ENST00000339701 LARP1BQ659C4 914 aaKnown RBP3.62□□□□□ -1.83
CSMD3-202ENST00000339701 CTAGE6Q86UF2 777 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 CTAGE4Q8IX94 777 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 CCDC85AQ96PX6 553 aaPredicted RBP3.62□□□□□ -1.83
CSMD3-202ENST00000339701 LZTS2Q9BRK4 669 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 BATF3Q9NR55 127 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 DBF4Q9UBU7 674 aaPredicted RBP3.62□□□□□ -1.83
CSMD3-202ENST00000339701 LAMA4Q16363 1823 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 ROBO1Q9Y6N7 1651 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 COL22A1Q8NFW1 1626 aaPredicted RBP3.62□□□□□ -1.83
CSMD3-202ENST00000339701 MEIS1O00470 390 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 PPEF1O14829 653 aaPredicted RBP3.62□□□□□ -1.83
CSMD3-202ENST00000339701 PPP1R12AO14974 1030 aaPredicted RBP3.62□□□□□ -1.83
CSMD3-202ENST00000339701 GOLGA8FQ08AF8 430 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 GOLGA8DPQ0D2H9 430 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 NR1H3Q13133 447 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 LLPHQ9BRT6 129 aaKnown RBP3.62□□□□□ -1.83
CSMD3-202ENST00000339701 FAM129AQ9BZQ8 928 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 SLITRK6Q9H5Y7 841 aa3.62□□□□□ -1.83
CSMD3-202ENST00000339701 AKAP7Q9P0M2 348 aaPredicted RBP3.62□□□□□ -1.83
CSMD3-202ENST00000339701 TFIP11Q9UBB9 837 aaKnown RBP3.62□□□□□ -1.83
CSMD3-202ENST00000339701 ZMYND10O75800 440 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 POLR2BP30876 1174 aaKnown RBP3.61□□□□□ -1.83
CSMD3-202ENST00000339701 PPP1R21Q6ZMI0 780 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 HS2ST1Q7LGA3 356 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 CATIPQ7Z7H3 387 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 MAP3K20Q9NYL2 800 aaKnown RBP3.61□□□□□ -1.83
CSMD3-202ENST00000339701 RGPD5Q99666 1765 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 AKAP11Q9UKA4 1901 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 CIB2O75838 187 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 KRT10P13645 584 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 GNA11P29992 359 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 PSMD6Q15008 389 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms