RNA–Protein interactions for RNA: YNL197C

WHI3, Transcript of RNA binding protein that sequesters CLN3 mRNA in cytoplasmic foci, yeast

Gene WHI3, Length 1,986 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
WHI3	YNL197C	IMD4	P50094	524 aa	Known RBP	3.58	□□□□□ -1.84
WHI3	YNL197C	MSC1	Q03104	513 aa		3.58	□□□□□ -1.84
WHI3	YNL197C	SGS1	P35187	1447 aa		3.58	□□□□□ -1.84
WHI3	YNL197C	MF(ALPHA)1	P01149	165 aa		3.58	□□□□□ -1.84
WHI3	YNL197C	GAL80	P04387	435 aa		3.58	□□□□□ -1.84
WHI3	YNL197C	TKL1	P23254	680 aa	Known RBP	3.58	□□□□□ -1.84
WHI3	YNL197C	CLB2	P24869	491 aa		3.58	□□□□□ -1.84
WHI3	YNL197C	MRE11	P32829	692 aa		3.58	□□□□□ -1.84
WHI3	YNL197C	SAS3	P34218	831 aa		3.58	□□□□□ -1.84
WHI3	YNL197C	YKL050C	P35736	922 aa		3.58	□□□□□ -1.84
WHI3	YNL197C	NUP133	P36161	1157 aa		3.58	□□□□□ -1.84
WHI3	YNL197C	PXL1	P36166	706 aa		3.58	□□□□□ -1.84
WHI3	YNL197C	TSC10	P38342	320 aa		3.58	□□□□□ -1.84
WHI3	YNL197C	TAX4	P47030	604 aa		3.58	□□□□□ -1.84
WHI3	YNL197C	IRC8	P47046	822 aa		3.58	□□□□□ -1.84
WHI3	YNL197C	PET130	P47065	347 aa		3.58	□□□□□ -1.84
WHI3	YNL197C	YTP1	P53584	459 aa		3.58	□□□□□ -1.84
WHI3	YNL197C	YNL058C	P53947	316 aa		3.58	□□□□□ -1.84
WHI3	YNL197C	APM1	Q00776	475 aa	Predicted RBP	3.58	□□□□□ -1.84
WHI3	YNL197C	FMP30	Q02883	468 aa		3.58	□□□□□ -1.84
WHI3	YNL197C	PIG1	Q06216	648 aa		3.58	□□□□□ -1.84
WHI3	YNL197C	BSP1	Q06604	576 aa		3.58	□□□□□ -1.84
WHI3	YNL197C	RPS10A	Q08745	105 aa	Predicted RBP	3.58	□□□□□ -1.84
WHI3	YNL197C	SFI1	Q12369	946 aa		3.58	□□□□□ -1.84
WHI3	YNL197C	ILS1	P09436	1072 aa	Known RBP	3.57	□□□□□ -1.84
WHI3	YNL197C	PRD1	P25375	712 aa		3.57	□□□□□ -1.84
WHI3	YNL197C	SEC66	P33754	206 aa		3.57	□□□□□ -1.84
WHI3	YNL197C	YBR144C	P34215	104 aa		3.57	□□□□□ -1.84
WHI3	YNL197C	VID24	P38263	362 aa		3.57	□□□□□ -1.84
WHI3	YNL197C	VID30	P53076	958 aa		3.57	□□□□□ -1.84
WHI3	YNL197C	BOP3	P53958	396 aa		3.57	□□□□□ -1.84
WHI3	YNL197C	RIM20	Q12033	661 aa		3.57	□□□□□ -1.84
WHI3	YNL197C	ATG29	Q12092	213 aa		3.57	□□□□□ -1.84
WHI3	YNL197C	AVL9	Q12500	764 aa		3.57	□□□□□ -1.84
WHI3	YNL197C	BI2	P03873	423 aa		3.56	□□□□□ -1.84
WHI3	YNL197C	MRP2	P10663	115 aa	Predicted RBP	3.56	□□□□□ -1.84
WHI3	YNL197C	SPO11	P23179	398 aa		3.56	□□□□□ -1.84
WHI3	YNL197C	ELO2	P25358	347 aa		3.56	□□□□□ -1.84
WHI3	YNL197C	YBL055C	P34220	418 aa	Predicted RBP	3.56	□□□□□ -1.84
WHI3	YNL197C	OCT1	P35999	772 aa		3.56	□□□□□ -1.84
WHI3	YNL197C	HOT13	P36078	116 aa		3.56	□□□□□ -1.84
WHI3	YNL197C	MUM2	P38236	366 aa		3.56	□□□□□ -1.84
WHI3	YNL197C	VPS41	P38959	992 aa		3.56	□□□□□ -1.84
WHI3	YNL197C	YML6	P51998	286 aa		3.56	□□□□□ -1.84
WHI3	YNL197C	ASI1	P54074	624 aa		3.56	□□□□□ -1.84
WHI3	YNL197C	RPA49	Q01080	415 aa	Predicted RBP	3.56	□□□□□ -1.84
WHI3	YNL197C	SNU56	Q03782	492 aa	Known RBP	3.56	□□□□□ -1.84
WHI3	YNL197C	FIN1	Q03898	291 aa		3.56	□□□□□ -1.84
WHI3	YNL197C	DPB4	Q04603	196 aa	Known RBP	3.56	□□□□□ -1.84
WHI3	YNL197C	ADE13	Q05911	482 aa	Known RBP	3.56	□□□□□ -1.84
WHI3	YNL197C	GRC3	Q07845	632 aa		3.56	□□□□□ -1.84
WHI3	YNL197C	OSW1	Q08692	278 aa		3.56	□□□□□ -1.84
WHI3	YNL197C	YOR389W	Q08912	624 aa		3.56	□□□□□ -1.84
WHI3	YNL197C	LEU9	Q12166	604 aa	Known RBP	3.56	□□□□□ -1.84
WHI3	YNL197C	FRE7	Q12333	620 aa		3.56	□□□□□ -1.84
WHI3	YNL197C	RAP1	P11938	827 aa		3.56	□□□□□ -1.84
WHI3	YNL197C	PMS1	P14242	873 aa		3.56	□□□□□ -1.84
WHI3	YNL197C	SNT1	P25357	1226 aa		3.56	□□□□□ -1.84
WHI3	YNL197C	ADK2	P26364	225 aa		3.56	□□□□□ -1.84
WHI3	YNL197C	SEF1	P34228	1148 aa		3.56	□□□□□ -1.84
WHI3	YNL197C	YJL107C	P42947	387 aa		3.56	□□□□□ -1.84
WHI3	YNL197C	YNL144C	P53907	740 aa		3.56	□□□□□ -1.84
WHI3	YNL197C	YMR178W	Q03219	274 aa	Known RBP	3.56	□□□□□ -1.84
WHI3	YNL197C	RQC1	Q05468	723 aa	Known RBP	3.56	□□□□□ -1.84
WHI3	YNL197C	BNR1	P40450	1375 aa		3.56	□□□□□ -1.84
WHI3	YNL197C	PDA1	P16387	420 aa	Known RBP	3.55	□□□□□ -1.84
WHI3	YNL197C	MBR1	P23493	339 aa		3.55	□□□□□ -1.84
WHI3	YNL197C	YCR006C	P25350	157 aa		3.55	□□□□□ -1.84
WHI3	YNL197C	IMG1	P25626	169 aa		3.55	□□□□□ -1.84
WHI3	YNL197C	SAC1	P32368	623 aa	Known RBP	3.55	□□□□□ -1.84
WHI3	YNL197C	PMT1	P33775	817 aa		3.55	□□□□□ -1.84
WHI3	YNL197C	CMC1	P36064	111 aa		3.55	□□□□□ -1.84
WHI3	YNL197C	APD1	P38281	316 aa		3.55	□□□□□ -1.84
WHI3	YNL197C	ARN1	P38731	627 aa		3.55	□□□□□ -1.84
WHI3	YNL197C	LRP1	P38801	184 aa	Known RBP	3.55	□□□□□ -1.84
WHI3	YNL197C	ANS1	P38832	159 aa		3.55	□□□□□ -1.84
WHI3	YNL197C	AFG3	P39925	761 aa		3.55	□□□□□ -1.84
WHI3	YNL197C	ALG5	P40350	334 aa		3.55	□□□□□ -1.84
WHI3	YNL197C	VMA13	P41807	478 aa	Known RBP	3.55	□□□□□ -1.84
WHI3	YNL197C	FAR3	P46671	204 aa		3.55	□□□□□ -1.84
WHI3	YNL197C	SMC3	P47037	1230 aa		3.55	□□□□□ -1.84
WHI3	YNL197C	BPL1	P48445	690 aa	Predicted RBP	3.55	□□□□□ -1.84
WHI3	YNL197C	LYS20	P48570	428 aa	Known RBP	3.55	□□□□□ -1.84
WHI3	YNL197C	ORC5	P50874	479 aa		3.55	□□□□□ -1.84
WHI3	YNL197C	SGF73	P53165	657 aa		3.55	□□□□□ -1.84
WHI3	YNL197C	IPI3	P53877	555 aa		3.55	□□□□□ -1.84
WHI3	YNL197C	PFA5	Q03289	374 aa		3.55	□□□□□ -1.84
WHI3	YNL197C	ARX1	Q03862	593 aa	Known RBP	3.55	□□□□□ -1.84
WHI3	YNL197C	RBS1	Q05672	457 aa	Known RBP	3.55	□□□□□ -1.84
WHI3	YNL197C	COQ9	Q05779	260 aa		3.55	□□□□□ -1.84
WHI3	YNL197C	APE1	P14904	514 aa		3.54	□□□□□ -1.84
WHI3	YNL197C	NUP1	P20676	1076 aa		3.54	□□□□□ -1.84
WHI3	YNL197C	BUD14	P27637	709 aa		3.54	□□□□□ -1.84
WHI3	YNL197C	TWF1	P53250	332 aa		3.54	□□□□□ -1.84
WHI3	YNL197C	TAP42	Q04372	366 aa		3.54	□□□□□ -1.84
WHI3	YNL197C	TPO3	Q06451	622 aa		3.54	□□□□□ -1.84
WHI3	YNL197C	TEN1	Q07921	160 aa		3.54	□□□□□ -1.84
WHI3	YNL197C	MCH4	Q08268	501 aa		3.54	□□□□□ -1.84
WHI3	YNL197C	ETT1	Q08421	412 aa	Known RBP	3.54	□□□□□ -1.84
WHI3	YNL197C	PFA4	Q12006	378 aa		3.54	□□□□□ -1.84

Retrieved 100 of 5,963 RNA–protein pairs in 12.6 ms