RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W YEH1Q07804 573 aa3.45□□□□□ -1.86
UPF3YGR072W GPN2Q08726 347 aaPredicted RBP3.45□□□□□ -1.86
UPF3YGR072W NDD1Q08887 554 aa3.45□□□□□ -1.86
UPF3YGR072W RRG1Q12167 365 aaPredicted RBP3.45□□□□□ -1.86
UPF3YGR072W YJR112W-AQ3E743 109 aa3.45□□□□□ -1.86
UPF3YGR072W DFR1P07807 211 aaKnown RBP RIP-Chip data3.44□□□□□ -1.86not detected
UPF3YGR072W LCB1P25045 558 aaKnown RBP3.44□□□□□ -1.86
UPF3YGR072W YKL050CP35736 922 aa3.44□□□□□ -1.86
UPF3YGR072W UIP3P39547 235 aa3.44□□□□□ -1.86
UPF3YGR072W ECM10P39987 644 aa3.44□□□□□ -1.86
UPF3YGR072W SPO22P40511 975 aa3.44□□□□□ -1.86
UPF3YGR072W DIA3P52290 468 aa3.44□□□□□ -1.86
UPF3YGR072W VID30P53076 958 aa3.44□□□□□ -1.86
UPF3YGR072W YGL036WP53185 909 aaPredicted RBP3.44□□□□□ -1.86
UPF3YGR072W NGL3Q03210 505 aa3.44□□□□□ -1.86
UPF3YGR072W UTP21Q06078 939 aaPredicted RBP3.44□□□□□ -1.86
UPF3YGR072W THI3Q07471 609 aa3.44□□□□□ -1.86
UPF3YGR072W YLR049CQ12110 428 aa3.44□□□□□ -1.86
UPF3YGR072W Q0010Q9ZZX9 128 aa3.44□□□□□ -1.86
UPF3YGR072W RTC1Q08281 1341 aa3.44□□□□□ -1.86
UPF3YGR072W PCT1P13259 424 aa3.43□□□□□ -1.86
UPF3YGR072W PWP1P21304 576 aaKnown RBP3.43□□□□□ -1.86
UPF3YGR072W AIM17P23180 465 aaKnown RBP3.43□□□□□ -1.86
UPF3YGR072W COQ3P27680 312 aa3.43□□□□□ -1.86
UPF3YGR072W PXA2P34230 853 aa3.43□□□□□ -1.86
UPF3YGR072W ADE17P38009 592 aaKnown RBP3.43□□□□□ -1.86
UPF3YGR072W PKP1P40530 394 aa3.43□□□□□ -1.86
UPF3YGR072W YGR127WP53275 312 aa3.43□□□□□ -1.86
UPF3YGR072W ZDS2P54786 942 aa3.43□□□□□ -1.86
UPF3YGR072W FMP40Q08968 688 aaPredicted RBP3.43□□□□□ -1.86
UPF3YGR072W APL4Q12028 832 aa3.43□□□□□ -1.86
UPF3YGR072W MF(ALPHA)1P01149 165 aa3.42□□□□□ -1.86
UPF3YGR072W MET17P06106 444 aa3.42□□□□□ -1.86
UPF3YGR072W ILS1P09436 1072 aaKnown RBP3.42□□□□□ -1.86
UPF3YGR072W KAR3P17119 729 aa3.42□□□□□ -1.86
UPF3YGR072W UBP11P36026 717 aa3.42□□□□□ -1.86
UPF3YGR072W BYE1P36106 594 aa3.42□□□□□ -1.86
UPF3YGR072W UBP13P38187 747 aa3.42□□□□□ -1.86
UPF3YGR072W FTH1P38310 465 aa3.42□□□□□ -1.86
UPF3YGR072W TPA1P40032 644 aaKnown RBP3.42□□□□□ -1.86
UPF3YGR072W FAR3P46671 204 aa3.42□□□□□ -1.86
UPF3YGR072W CTK2P46962 323 aa3.42□□□□□ -1.86
UPF3YGR072W ORC5P50874 479 aa3.42□□□□□ -1.86
UPF3YGR072W NNF2P53253 936 aa3.42□□□□□ -1.86
UPF3YGR072W VPS38Q05919 439 aa3.42□□□□□ -1.86
UPF3YGR072W RAD34Q06665 692 aa3.42□□□□□ -1.86
UPF3YGR072W RIM20Q12033 661 aa3.42□□□□□ -1.86
UPF3YGR072W INP53Q12271 1107 aa3.42□□□□□ -1.86
UPF3YGR072W YPT6Q99260 215 aa3.42□□□□□ -1.86
UPF3YGR072W ARD1P07347 238 aaPredicted RBP3.41□□□□□ -1.86
UPF3YGR072W ROX1P25042 368 aa3.41□□□□□ -1.86
UPF3YGR072W DBF4P32325 704 aa3.41□□□□□ -1.86
UPF3YGR072W GSH1P32477 678 aa3.41□□□□□ -1.86
UPF3YGR072W NFU1P32860 256 aa3.41□□□□□ -1.86
UPF3YGR072W SEF1P34228 1148 aa3.41□□□□□ -1.86
UPF3YGR072W PEX5P35056 612 aa3.41□□□□□ -1.86
UPF3YGR072W VID24P38263 362 aa3.41□□□□□ -1.86
UPF3YGR072W MET28P40573 187 aa3.41□□□□□ -1.86
UPF3YGR072W PTR3P43606 678 aa3.41□□□□□ -1.86
UPF3YGR072W ROK1P45818 564 aaPredicted RBP3.41□□□□□ -1.86
UPF3YGR072W MDV1P47025 714 aa3.41□□□□□ -1.86
UPF3YGR072W RPS7BP48164 190 aaKnown RBP3.41□□□□□ -1.86
UPF3YGR072W LYS4P49367 693 aaPredicted RBP3.41□□□□□ -1.86
UPF3YGR072W LCL3P53153 274 aa3.41□□□□□ -1.86
UPF3YGR072W SCW10Q04951 389 aa3.41□□□□□ -1.86
UPF3YGR072W LUC7Q07508 261 aaPredicted RBP3.41□□□□□ -1.86
UPF3YGR072W LEU9Q12166 604 aaKnown RBP3.41□□□□□ -1.86
UPF3YGR072W PUF2Q12221 1075 aaKnown RBP RIP-Chip data3.41□□□□□ -1.86not detected
UPF3YGR072W SPE4Q12455 300 aa3.41□□□□□ -1.86
UPF3YGR072W AVL9Q12500 764 aa3.41□□□□□ -1.86
UPF3YGR072W PET111P08468 800 aa3.4□□□□□ -1.87
UPF3YGR072W RAP1P11938 827 aa3.4□□□□□ -1.87
UPF3YGR072W ERG3P32353 365 aa3.4□□□□□ -1.87
UPF3YGR072W SSE2P32590 693 aaKnown RBP3.4□□□□□ -1.87
UPF3YGR072W YBR144CP34215 104 aa3.4□□□□□ -1.87
UPF3YGR072W SNU114P36048 1008 aaKnown RBP3.4□□□□□ -1.87
UPF3YGR072W OTU2P38747 307 aaKnown RBP3.4□□□□□ -1.87
UPF3YGR072W ALG5P40350 334 aa3.4□□□□□ -1.87
UPF3YGR072W YIR016WP40572 265 aa3.4□□□□□ -1.87
UPF3YGR072W GPD2P41911 440 aaKnown RBP3.4□□□□□ -1.87
UPF3YGR072W MAK10Q02197 733 aa3.4□□□□□ -1.87
UPF3YGR072W YMR178WQ03219 274 aaKnown RBP3.4□□□□□ -1.87
UPF3YGR072W PFA5Q03289 374 aa3.4□□□□□ -1.87
UPF3YGR072W YTH1Q06102 208 aaPredicted RBP3.4□□□□□ -1.87
UPF3YGR072W ETT1Q08421 412 aaKnown RBP3.4□□□□□ -1.87
UPF3YGR072W RTN2Q12443 393 aa3.4□□□□□ -1.87
UPF3YGR072W PDX1P16451 410 aa3.39□□□□□ -1.87
UPF3YGR072W EST1P17214 699 aaPredicted RBP3.39□□□□□ -1.87
UPF3YGR072W REC107P21651 314 aa3.39□□□□□ -1.87
UPF3YGR072W CLB3P24870 427 aa3.39□□□□□ -1.87
UPF3YGR072W YCR006CP25350 157 aa3.39□□□□□ -1.87
UPF3YGR072W SAC1P32368 623 aaKnown RBP3.39□□□□□ -1.87
UPF3YGR072W SRO77P38163 1010 aa3.39□□□□□ -1.87
UPF3YGR072W ICS2P38284 255 aa3.39□□□□□ -1.87
UPF3YGR072W DED81P38707 554 aaKnown RBP3.39□□□□□ -1.87
UPF3YGR072W GND1P38720 489 aaKnown RBP3.39□□□□□ -1.87
UPF3YGR072W MET18P40469 1032 aa3.39□□□□□ -1.87
UPF3YGR072W DOT5P40553 215 aa3.39□□□□□ -1.87
UPF3YGR072W AXL1P40851 1208 aa3.39□□□□□ -1.87
UPF3YGR072W YFR020WP43600 232 aa3.39□□□□□ -1.87
Retrieved 100 of 5,963 RNA–protein pairs in 14 ms