RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 RLFQ13129 1914 aa11.94□□□□□ -0.5
SS18-210ENST00000578700 M0R2C6 588 aa11.93□□□□□ -0.5
SS18-210ENST00000578700 MPHOSPH10O00566 681 aaKnown RBP11.93□□□□□ -0.5
SS18-210ENST00000578700 GPAA1O43292 621 aa11.93□□□□□ -0.5
SS18-210ENST00000578700 CD2BP2O95400 341 aaKnown RBP11.93□□□□□ -0.5
SS18-210ENST00000578700 APPP05067 770 aa11.93□□□□□ -0.5
SS18-210ENST00000578700 HSPD1P10809 573 aaKnown RBP11.93□□□□□ -0.5
SS18-210ENST00000578700 FGD1P98174 961 aa11.93□□□□□ -0.5
SS18-210ENST00000578700 GRB14Q14449 540 aa11.93□□□□□ -0.5
SS18-210ENST00000578700 PLS1Q14651 629 aa11.93□□□□□ -0.5
SS18-210ENST00000578700 TRIM60Q495X7 471 aa11.93□□□□□ -0.5
SS18-210ENST00000578700 TATDN1Q6P1N9 297 aa11.93□□□□□ -0.5
SS18-210ENST00000578700 MAGEB6Q8N7X4 407 aa11.93□□□□□ -0.5
SS18-210ENST00000578700 OSBP2Q969R2 916 aa11.93□□□□□ -0.5
SS18-210ENST00000578700 C12orf42Q96LP6 360 aa11.93□□□□□ -0.5
SS18-210ENST00000578700 ANP32EQ9BTT0 268 aa11.93□□□□□ -0.5
SS18-210ENST00000578700 NACAP1Q9BZK3 213 aa11.93□□□□□ -0.5
SS18-210ENST00000578700 SERPINB13Q9UIV8 391 aa11.93□□□□□ -0.5
SS18-210ENST00000578700 LIMCH1Q9UPQ0 1083 aa11.93□□□□□ -0.5
SS18-210ENST00000578700 SPDYE16A6NNV3 312 aaPredicted RBP11.92□□□□□ -0.5
SS18-210ENST00000578700 POLR3DP05423 398 aaPredicted RBP11.92□□□□□ -0.5
SS18-210ENST00000578700 ADORA2AP29274 412 aa11.92□□□□□ -0.5
SS18-210ENST00000578700 ADCYAP1R1P41586 468 aa11.92□□□□□ -0.5
SS18-210ENST00000578700 SH3RF1Q7Z6J0 888 aa11.92□□□□□ -0.5
SS18-210ENST00000578700 TTC6Q86TZ1 520 aa11.92□□□□□ -0.5
SS18-210ENST00000578700 NEK1Q96PY6 1258 aa11.92□□□□□ -0.5
SS18-210ENST00000578700 MOV10L1Q9BXT6 1211 aaKnown RBP11.92□□□□□ -0.5
SS18-210ENST00000578700 KIAA1683Q9H0B3 1180 aa11.92□□□□□ -0.5
SS18-210ENST00000578700 ZNF213O14771 459 aa11.91□□□□□ -0.5
SS18-210ENST00000578700 HOXC6P09630 235 aa11.91□□□□□ -0.5
SS18-210ENST00000578700 CYBAP13498 195 aa11.91□□□□□ -0.5
SS18-210ENST00000578700 FOSL2P15408 326 aa11.91□□□□□ -0.5
SS18-210ENST00000578700 ERCC3P19447 782 aa11.91□□□□□ -0.5
SS18-210ENST00000578700 PLCD1P51178 756 aa11.91□□□□□ -0.5
SS18-210ENST00000578700 AK2P54819 239 aa11.91□□□□□ -0.5
SS18-210ENST00000578700 NUCB2P80303 420 aa11.91□□□□□ -0.5
SS18-210ENST00000578700 TRDNQ13061 729 aa11.91□□□□□ -0.5
SS18-210ENST00000578700 SEPT2Q15019 361 aa11.91□□□□□ -0.5
SS18-210ENST00000578700 NOL8Q76FK4 1167 aaKnown RBP11.91□□□□□ -0.5
SS18-210ENST00000578700 NCAPG2Q86XI2 1143 aa11.91□□□□□ -0.5
SS18-210ENST00000578700 CHMP4CQ96CF2 233 aa11.91□□□□□ -0.5
SS18-210ENST00000578700 INTS4Q96HW7 963 aaKnown RBP11.91□□□□□ -0.5
SS18-210ENST00000578700 TMX3Q96JJ7 454 aa11.91□□□□□ -0.5
SS18-210ENST00000578700 TANGO6Q9C0B7 1094 aa11.91□□□□□ -0.5
SS18-210ENST00000578700 PUS7LQ9H0K6 701 aaKnown RBP11.91□□□□□ -0.5
SS18-210ENST00000578700 SH2B1Q9NRF2 756 aaPredicted RBP11.91□□□□□ -0.5
SS18-210ENST00000578700 FOXD4L1Q9NU39 408 aa11.91□□□□□ -0.5
SS18-210ENST00000578700 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.91□□□□□ -0.5
SS18-210ENST00000578700 ZNFX1Q9P2E3 1918 aaKnown RBP11.9□□□□□ -0.5
SS18-210ENST00000578700 TRIM43BA6NCK2 446 aa11.9□□□□□ -0.5
SS18-210ENST00000578700 COBLO75128 1261 aa11.9□□□□□ -0.5
SS18-210ENST00000578700 CHGBP05060 677 aa11.9□□□□□ -0.5
SS18-210ENST00000578700 RPS6KB1P23443 525 aa11.9□□□□□ -0.5
SS18-210ENST00000578700 COG2Q14746 738 aa11.9□□□□□ -0.5
SS18-210ENST00000578700 ADCK5Q3MIX3 580 aa11.9□□□□□ -0.5
SS18-210ENST00000578700 RALYLQ86SE5 291 aaKnown RBP11.9□□□□□ -0.5
SS18-210ENST00000578700 TRIM43Q96BQ3 446 aaPredicted RBP11.9□□□□□ -0.5
SS18-210ENST00000578700 SPATC1LQ9H0A9 340 aa11.9□□□□□ -0.5
SS18-210ENST00000578700 ALDH8A1Q9H2A2 487 aaPredicted RBP11.9□□□□□ -0.5
SS18-210ENST00000578700 TTYH1Q9H313 450 aaPredicted RBP11.9□□□□□ -0.5
SS18-210ENST00000578700 SLC5A4Q9NY91 659 aa11.9□□□□□ -0.5
SS18-210ENST00000578700 HOXC10Q9NYD6 342 aa11.9□□□□□ -0.5
SS18-210ENST00000578700 MAGEB6P1A0A0J9YX57 407 aa11.89□□□□□ -0.51
SS18-210ENST00000578700 TCRBV5S4A2TA0A5A2 114 aa11.89□□□□□ -0.51
SS18-210ENST00000578700 PATL2C9JE40 543 aaKnown RBP11.89□□□□□ -0.51
SS18-210ENST00000578700 SEPT4O43236 478 aa11.89□□□□□ -0.51
SS18-210ENST00000578700 STRNO43815 780 aa11.89□□□□□ -0.51
SS18-210ENST00000578700 MBD4O95243 580 aa11.89□□□□□ -0.51
SS18-210ENST00000578700 CYP21A2P08686 494 aa11.89□□□□□ -0.51
SS18-210ENST00000578700 GUCY1A2P33402 732 aa11.89□□□□□ -0.51
SS18-210ENST00000578700 SHMT1P34896 483 aa11.89□□□□□ -0.51
SS18-210ENST00000578700 SMAD3P84022 425 aaKnown RBP11.89□□□□□ -0.51
SS18-210ENST00000578700 TLE2Q04725 743 aa11.89□□□□□ -0.51
SS18-210ENST00000578700 NBR1Q14596 966 aa11.89□□□□□ -0.51
SS18-210ENST00000578700 LRRC41Q15345 812 aa11.89□□□□□ -0.51
SS18-210ENST00000578700 SLFNL1Q499Z3 407 aa11.89□□□□□ -0.51
SS18-210ENST00000578700 FAM47AQ5JRC9 791 aa11.89□□□□□ -0.51
SS18-210ENST00000578700 OLFML2BQ68BL8 750 aa11.89□□□□□ -0.51
SS18-210ENST00000578700 LBX2Q6XYB7 198 aa11.89□□□□□ -0.51
SS18-210ENST00000578700 RNPC3Q96LT9 517 aaKnown RBP11.89□□□□□ -0.51
SS18-210ENST00000578700 TTC14Q96N46 770 aa11.89□□□□□ -0.51
SS18-210ENST00000578700 NAPBQ9H115 298 aa11.89□□□□□ -0.51
SS18-210ENST00000578700 EHD4Q9H223 541 aa11.89□□□□□ -0.51
SS18-210ENST00000578700 PRDM6Q9NQX0 595 aa11.89□□□□□ -0.51
SS18-210ENST00000578700 PDLIM7Q9NR12 457 aa11.89□□□□□ -0.51
SS18-210ENST00000578700 ZMYM6O95789 1325 aa11.88□□□□□ -0.51
SS18-210ENST00000578700 ZNF236Q9UL36 1845 aa11.88□□□□□ -0.51
SS18-210ENST00000578700 SMCHD1A6NHR9 2005 aa11.88□□□□□ -0.51
SS18-210ENST00000578700 A0A1W2PRG0 241 aa11.88□□□□□ -0.51
SS18-210ENST00000578700 TDO2P48775 406 aa11.88□□□□□ -0.51
SS18-210ENST00000578700 EVX2Q03828 476 aa11.88□□□□□ -0.51
SS18-210ENST00000578700 CUL4AQ13619 759 aa11.88□□□□□ -0.51
SS18-210ENST00000578700 DHX32Q7L7V1 743 aaKnown RBP11.88□□□□□ -0.51
SS18-210ENST00000578700 SPICE1Q8N0Z3 855 aa11.88□□□□□ -0.51
SS18-210ENST00000578700 PPM1EQ8WY54 764 aa11.88□□□□□ -0.51
SS18-210ENST00000578700 GBP4Q96PP9 640 aa11.88□□□□□ -0.51
SS18-210ENST00000578700 STRBPQ96SI9 672 aaKnown RBP11.88□□□□□ -0.51
SS18-210ENST00000578700 MCM9Q9NXL9 1143 aa11.88□□□□□ -0.51
SS18-210ENST00000578700 NCOR1O75376 2440 aa11.88□□□□□ -0.51
SS18-210ENST00000578700 E7EWF7 191 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms